Pregenerated sensors for HSCB (Homo sapiens)
Ensembl gene IDs: ENSG00000100209Ensembl transcript IDs: ENST00000216027.8, ENST00000398941.6, ENST00000420442.5, ENST00000450178.5, ENST00000483861.5, ENST00000485599.5, ENST00000495977.1
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTAGGTGTGAGCCACTGTaGCCAGCAAGAACTTTATTT | + |
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Preference number: 2 (lower is better) Translates to: ASSKSSCSKALLTLSVNSRCEPL*PARTLF Trigger: AAATAAAGTTCTTGCTGGGCACAGTGGCTCACACCT...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| 3UTR CAA 90 bp | TCCTTGGCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATC | + |
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Preference number: 2 (lower is better) Translates to: SLASSKSSCSKALLT*SVNSFCLALTMDSI Trigger: GATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGCCAAGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| 3UTR-3UTR CCA 90 bp | TGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAGGAATCTCTATTCCATaGAGCTTTAGAAGGTACAGT | + |
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Preference number: 2 (lower is better) Translates to: CSKALLTLSVNSFCLALTGISIP*SFRRYS Trigger: ACTGTACCTTCTAAAGCTCCATGGAATAGAGATTCC...TGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| 3UTR-3UTR CAA 90 bp | TTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: LALTMDSISFMAASLSASKALLT*SVNSFC Trigger: ACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTT...AGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTCCGCCCGGGGCCCCATaGGCCGCCGCAGTTCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: LALTMDSISFMAASLSASPPGAP*AAAVPT Trigger: TGTTGGAACTGCGGCGGCCCATGGGGCCCCGGGCGG...AGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGCCGCCCGGGGCCCCATaGGCCGCCGCAGTTCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLPPGAP*AAAVPT Trigger: TGTTGGAACTGCGGCGGCCCATGGGGCCCCGGGCGG...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACACCGCCCGGGGCCCCATaGGCCGCCGCAGTTCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: CSKALLTLSVNSFCLALTPPGAP*AAAVPT Trigger: TGTTGGAACTGCGGCGGCCCATGGGGCCCCGGGCGG...TGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAACAGCGGGGATAATTaGTTCCCGCCTGCGACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ALTMDSISFMAASLSASANSGDN*FPPATQ Trigger: CTGCGTCGCAGGCGGGAAGCAATTATCCCCGCTGTT...CGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTGTGGGGTCAGGTGCCTaGAGCGCTCGGCACTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSVGSGA*SARHCG Trigger: CCCACAGTGCCGAGCGCTGCAGGCACCTGACCCCAC...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCATTGATTTCCATTTCGAGTGGGGTCAGGTaGCTGCAGCGCTCGGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: SFMAASLSASASFSLISISSGVR*LQRSAL Trigger: CAGTGCCGAGCGCTGCAGGCACCTGACCCCACTCGA...AATGGAAATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTCTCCCCCGCCACATCTaGCCGGCGGCCTATCTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSLPRHI*PAAYLA Trigger: GGCTAGATAGGCCGCCGGCCAGATGTGGCGGGGGAG...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | GCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGTGGAGTGCAGTTGCGTaGTCTCTGCTCACTGCAACC | + |
|
Preference number: 4 (lower is better) Translates to: ALTMDSISFMAASLSASAWSAVA*SLLTAT Trigger: GGTTGCAGTGAGCAGAGATCACGCAACTGCACTCCA...CGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGGTGGGGTCAGGTGCCTaGAGCGCTCGGCACTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLVGSGA*SARHCG Trigger: CCCACAGTGCCGAGCGCTGCAGGCACCTGACCCCAC...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TCTGTCCTTTCAGGAATCTCTATTCCATGGAGCTTTAGAAGGTACAGTCCTCTGGTGATCTCTGCTCACTaGAACCTCCACCTCACGGGT | + |
|
Preference number: 4 (lower is better) Translates to: SVLSGISIPWSFRRYSPLVISAH*NLHLTG Trigger: ACCCGTGAGGTGGAGGTTGCAGTGAGCAGAGATCAC...CAGAGGACTGTACCTTCTAAAGCTCCATGGAATAGAGATTCCTGAAAGGACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TCTGTCCTTTCAGGAATCTCTATTCCATGGAGCTTTAGAAGGTACAGTCCTCTGAGCCGTGGTCACTCGTaGGGAAAAGCAAAGAGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SVLSGISIPWSFRRYSPLSRGHS*GKAKRA Trigger: CGCTCTCTTTGCTTTTCCCCACGAGTGACCACGGCT...CAGAGGACTGTACCTTCTAAAGCTCCATGGAATAGAGATTCCTGAAAGGACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | AAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAATGGACTCCCCCGCCACATCTaGCCGGCGGCCTATCTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KSTAHIVSKFFLFSFDNGLPRHI*PAAYLA Trigger: GGCTAGATAGGCCGCCGGCCAGATGTGGCGGGGGAG...TCCATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTCGAGTGGGGTCAGGTaGCTGCAGCGCTCGGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLSSGVR*LQRSAL Trigger: CAGTGCCGAGCGCTGCAGGCACCTGACCCCACTCGA...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCGAGTGGGGTCAGGTaGCTGCAGCGCTCGGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAASSGVR*LQRSAL Trigger: CAGTGCCGAGCGCTGCAGGCACCTGACCCCACTCGA...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGCAGTTGCGTGATCTCTaGTCACTGCAACCTCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: ALTMDSISFMAASLSASAQLRDL*SLQPPP Trigger: AGGTGGAGGTTGCAGTGAGCAGAGATCACGCAACTG...CGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | AATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCTTAGCGGTCTCCTTCTaGGAACCCCTGTCGGCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: NGFNLFHGSFTFSFCEFFLAVSF*EPLSAK Trigger: TTTGGCCGACAGGGGTTCCCAGAAGGAGACCGCTAA...GAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTCAGCGCTCGGCACTGTaGGCAGAAGAACCTGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSQRSAL*AEEPVL Trigger: GAGGACAGGTTCTTCTGCCCACAGTGCCGAGCGCTG...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | GCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGCTGAAGAAATCTGGGTaGACAAGACGCTGCAGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ALTMDSISFMAASLSASALKKSG*TRRCSC Trigger: GCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAG...CGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420442.5 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTGGGTGGACAAGACGCTaGAGTTGCTGGTACCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSGWTRR*SCWYLC Trigger: GCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCC...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGCAGCGCTCGGCACTGTaGGCAGAAGAACCTGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLQRSAL*AEEPVL Trigger: GAGGACAGGTTCTTCTGCCCACAGTGCCGAGCGCTG...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | AATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCTCGCTGTATCAACTCTaGAGGAACGGTTGCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: NGFNLFHGSFTFSFCEFFSLYQL*RNGCSP Trigger: TGGACTGCAACCGTTCCTTCAGAGTTGATACAGCGA...GAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | GATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCATTGTCTGAGACCTCTGGCTaGAGAAATCTGGGTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: DSISFMAASLSASASFSLSETSG*RNLGGQ Trigger: TTGTCCACCCAGATTTCTTCAGCCAGAGGTCTCAGA...CAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000420442.5 |
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| CDS-3UTR TCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTCTGGTCTTGAACTCCTaGCCTTGTCATCCACCCACC | + |
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Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSLVLNS*PCHPPT Trigger: GGTGGGTGGATGACAAGGTCAGGAGTTCAAGACCAG...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAACAGCGGGGATAATTaGTTCCCGCCTGCGACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLNSGDN*FPPATQ Trigger: CTGCGTCGCAGGCGGGAAGCAATTATCCCCGCTGTT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTAACAGCGGGGATAATTaGTTCCCGCCTGCGACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAANSGDN*FPPATQ Trigger: CTGCGTCGCAGGCGGGAAGCAATTATCCCCGCTGTT...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | AAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAATGGAGGGTGGACAAGACGCTaGAGTTGCTGGTACCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: KSTAHIVSKFFLFSFDNGGWTRR*SCWYLC Trigger: GCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCC...TCCATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420442.5 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTGTGATCTCTGCTCACTaGAACCTCCACCTCACGGGT | + |
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Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSVISAH*NLHLTG Trigger: ACCCGTGAGGTGGAGGTTGCAGTGAGCAGAGATCAC...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGGGCCTACCAAGTAGCTaGGATTACAGGCACGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLGLPSS*DYRHAP Trigger: TGGCGCGTGCCTGTAATCCCAGCTACTTGGTAGGCC...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTGGCCTACCAAGTAGCTaGGATTACAGGCACGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAAGLPSS*DYRHAP Trigger: TGGCGCGTGCCTGTAATCCCAGCTACTTGGTAGGCC...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | AATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCGGTCGAATGCTTCTCTaGGAAGTCCTTTTCAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: NGFNLFHGSFTFSFCEFFGRMLL*EVLFSL Trigger: CAGACTGAAAAGGACTTCTCAGAGAAGCATTCGACC...GAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTCTGGTCTTGAACTCCTaGCCTTGTCATCCACCCACC | + |
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Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAALVLNS*PCHPPT Trigger: GGTGGGTGGATGACAAGGTCAGGAGTTCAAGACCAG...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
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| CDS-3UTR TCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTGGAGTGCAGTTGCGTaGTCTCTGCTCACTGCAACC | + |
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Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLWSAVA*SLLTAT Trigger: GGTTGCAGTGAGCAGAGATCACGCAACTGCACTCCA...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | TTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTAGTTGCTGGTACCTGTaGTGGAGCTTCGCTGTATCA | + |
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Preference number: 4 (lower is better) Translates to: LALTMDSISFMAASLSASSCWYL*WSFAVS Trigger: TGATACAGCGAAGCTCCAGCACAGGTACCAGCAACT...AGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420442.5 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTAAGCTGGAGTGCAGTTaGGTGATCTCTGCTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSKLECS*VISAHC Trigger: GCAGTGAGCAGAGATCACGCAACTGCACTCCAGCTT...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTAGCGGTCTCCTTCTaGGAACCCCTGTCGGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLLAVSF*EPLSAK Trigger: TTTGGCCGACAGGGGTTCCCAGAAGGAGACCGCTAA...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAGACGCTGCAGTTGCTaGTACCTGTGCTGGAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLRRCSC*YLCWSF Trigger: GAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
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| CDS-3UTR CCA 90 bp | TGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAAGACGCTGCAGTTGCTaGTACCTGTGCTGGAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: CSKALLTLSVNSFCLALTRRCSC*YLCWSF Trigger: GAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCT...TGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420442.5 |
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| CDS-3UTR TCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTCGCTGTATCAACTCTaGAGGAACGGTTGCAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSSLYQL*RNGCSP Trigger: TGGACTGCAACCGTTCCTTCAGAGTTGATACAGCGA...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTAGTTGCTGGTACCTGTaGTGGAGCTTCGCTGTATCA | + |
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Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSSCWYL*WSFAVS Trigger: TGATACAGCGAAGCTCCAGCACAGGTACCAGCAACT...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
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| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGCAGTTGCGTGATCTCTaGTCACTGCAACCTCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLQLRDL*SLQPPP Trigger: AGGTGGAGGTTGCAGTGAGCAGAGATCACGCAACTG...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAAGCTGGAGTGCAGTTaGGTGATCTCTGCTCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLKLECS*VISAHC Trigger: GCAGTGAGCAGAGATCACGCAACTGCACTCCAGCTT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
||
| CDS-3UTR CCA 90 bp | GCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGGGAATCTCTATTCCATaGAGCTTTAGAAGGTACAGT | + |
|
Preference number: 4 (lower is better) Translates to: ALTMDSISFMAASLSASAGISIP*SFRRYS Trigger: ACTGTACCTTCTAAAGCTCCATGGAATAGAGATTCC...CGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
||
| CDS-3UTR TCA 90 bp | TCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAATGTCGCTGTATCAACTCTaGAGGAACGGTTGCAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SKALLTLSVNSFCLALTMSLYQL*RNGCSP Trigger: TGGACTGCAACCGTTCCTTCAGAGTTGATACAGCGA...CATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR TCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTCTGAGACCTCTGGCTaGAGAAATCTGGGTGGACAA | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLSETSG*RNLGGQ Trigger: TTGTCCACCCAGATTTCTTCAGCCAGAGGTCTCAGA...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
||
| CDS-3UTR TCA 90 bp | CATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCATTGATTTCCATTATTTCAAGTCCTTTTCAGTCTaGGACCTCTGGCTGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HGSFTFSFCEFFIDFHYFKSFSV*DLWLKK Trigger: TTTCTTCAGCCAGAGGTCTCAGACTGAAAAGGACTT...GAAATAATGGAAATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420442.5 |
||
| CDS-3UTR TCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTGGTCGAATGCTTCTCTaGGAAGTCCTTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSGRMLL*EVLFSL Trigger: CAGACTGAAAAGGACTTCTCAGAGAAGCATTCGACC...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR TCA 90 bp | TTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCATTGATTTCCATTATTGGTCGAATGCTTCTCTaGGAAGTCCTTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: FMAASLSASASFSLISIIGRMLL*EVLFSL Trigger: CAGACTGAAAAGGACTTCTCAGAGAAGCATTCGACC...AATAATGGAAATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAGGCACGCGCCACCATaGCCGGCTAATTTTTGTATT | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLRHAPP*PANFCI Trigger: AATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | AGTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCAGGCACGCGCCACCATaGCCGGCTAATTTTTGTATT | + |
|
Preference number: 4 (lower is better) Translates to: SKFFLFSFDNGFNLFHGSRHAPP*PANFCI Trigger: AATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCT...GCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000450178.5 |
||
| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTGCTGGTACCTGTGCTaGAGCTTCGCTGTATCAACT | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLCWYLC*SFAVST Trigger: AGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCA...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
||
| CDS-3UTR CCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTGCTGGTACCTGTGCTaGAGCTTCGCTGTATCAACT | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAACWYLC*SFAVST Trigger: AGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCA...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420442.5 |
||
| CDS-3UTR CCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGCTGAAGAAATCTGGGTaGACAAGACGCTGCAGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLLKKSG*TRRCSC Trigger: GCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAG...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
||
| CDS-3UTR GCA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCACCAGGGTCGAATaGTTCTCTGAGAAGTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: ASSKSSCSKALLTLSVNSFTRVE*FSEKSF Trigger: AAAGGACTTCTCAGAGAAGCATTCGACCCTGGTGAA...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | TCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACAATGGTCCTTTTCAGTCTGTaGTGGAGCTTCGCTGTATCA | + |
|
Preference number: 4 (lower is better) Translates to: SKALLTLSVNSFCLALTMVLFSL*WSFAVS Trigger: TGATACAGCGAAGCTCCAGCACAGACTGAAAAGGAC...CATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450178.5 |
||
| CDS-3UTR TCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAAGTCCTTTTCAGTCTaGGACCTCTGGCTGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLKSFSV*DLWLKK Trigger: TTTCTTCAGCCAGAGGTCTCAGACTGAAAAGGACTT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
||
| CDS-3UTR GCA 90 bp | TTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACTTCACCAGGGTCGAATaGTTCTCTGAGAAGTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: LFKSTAHIVSKFFLFSFDFTRVE*FSEKSF Trigger: AAAGGACTTCTCAGAGAAGCATTCGACCCTGGTGAA...GTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTTCACCAGGGTCGAATaGTTCTCTGAGAAGTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAAFTRVE*FSEKSF Trigger: AAAGGACTTCTCAGAGAAGCATTCGACCCTGGTGAA...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR GCA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGAGGTGTGAGCCACTGTaGCCAGCAAGAACTTTATTT | + |
|
Preference number: 4 (lower is better) Translates to: FKVILFKSTAHIVSKFFLRCEPL*PARTLF Trigger: AAATAAAGTTCTTGCTGGGCACAGTGGCTCACACCT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
||
| CDS-3UTR CCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTCTTTTCAGTCTGTGCTaGAGCTTCGCTGTATCAACT | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAALFSLC*SFAVST Trigger: AGTTGATACAGCGAAGCTCCAGCACAGACTGAAAAG...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450178.5 |
||
| CDS-3UTR CCA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTGGAATCTCTATTCCATaGAGCTTTAGCTTACAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: VNSFCLALTMDSISFMAAGISIP*SFSLQG Trigger: ACCTTGTAAGCTAAAGCTCCATGGAATAGAGATTCC...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420442.5 |
||
| CDS CCA 90 bp | GACCTCTGGCTGAAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTaGTACCTGTGCTGGAGCTTCGCTGTATCAACTCTGAAGGAACGG | + |
|
Preference number: 5 (lower is better) Translates to: DLWLKKSGWTRRCSC*YLCWSFAVSTLKER Trigger: CCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAGCCAGAGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS GCA 90 bp | CTGAAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTaGTGGAGCTTCGCTGTATCAACTCTGAAGGAACGGTTGCAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LKKSGWTRRCSCWYL*WSFAVSTLKERLQS Trigger: GGACTGCAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000485599.5 |
||
| CDS GCA 90 bp | CTGAAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTaGTGGAGCTTCGCTGTATCAACTCTGAAGGAACGGTTGCCTATT | + |
|
Preference number: 5 (lower is better) Translates to: LKKSGWTRRCSCWYL*WSFAVSTLKERLPI Trigger: AATAGGCAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000483861.5 ENST00000495977.1 |
||
| CDS CCA 90 bp | AAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTGCTaGAGCTTCGCTGTATCAACTCTGAAGGAACGGTTGCAGTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: KKSGWTRRCSCWYLC*SFAVSTLKERLQSI Trigger: TATGGACTGCAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000485599.5 |
||
| CDS CCA 90 bp | AAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTGCTaGAGCTTCGCTGTATCAACTCTGAAGGAACGGTTGCCTATTCAT | + |
|
Preference number: 5 (lower is better) Translates to: KKSGWTRRCSCWYLC*SFAVSTLKERLPIH Trigger: ATGAATAGGCAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000483861.5 ENST00000495977.1 |
||
| CDS-3UTR CAA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTGACAAGACGCTGCAGTaGCTGGTACCTGTGCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ASSKSSCSKALLTLSVNSDKTLQ*LVPVLE Trigger: CTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTC...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000420442.5 |
||
| CDS-3UTR CAA 90 bp | TTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGTTTAGCTTTGACGACAAGACGCTGCAGTaGCTGGTACCTGTGCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LFKSTAHIVSKFFLFSFDDKTLQ*LVPVLE Trigger: CTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTC...GTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420442.5 |
||
| CDS-3UTR CAA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTCAAGCTGGAGTGCAGTaGCGTGATCTCTGCTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: ASSKSSCSKALLTLSVNSQAGVQ*RDLCSL Trigger: CAGTGAGCAGAGATCACGCAACTGCACTCCAGCTTG...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398941.6 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | TTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTACTCTGAAGGAACGGTaGCAGTCCATAAGGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LALTMDSISFMAASLSASTLKER*QSIRLK Trigger: CTTCAGCCTTATGGACTGCAACCGTTCCTTCAGAGT...AGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTCAAGCTGGAGTGCAGTaGCGTGATCTCTGCTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: VNSFCLALTMDSISFMAAQAGVQ*RDLCSL Trigger: CAGTGAGCAGAGATCACGCAACTGCACTCCAGCTTG...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | TTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTTTCTGACTCTGAAGGAACGGTaGCAGTCCATAAGGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: FKVILFKSTAHIVSKFFLTLKER*QSIRLK Trigger: CTTCAGCCTTATGGACTGCAACCGTTCCTTCAGAGT...CAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTACTCTGAAGGAACGGTaGCAGTCCATAAGGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VNSFCLALTMDSISFMAATLKER*QSIRLK Trigger: CTTCAGCCTTATGGACTGCAACCGTTCCTTCAGAGT...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | TTCAATCTCTTTCATGGCAGCTTCACTTTCAGCTTCTGCGAGTTTTTCATTGATAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: FNLFHGSFTFSFCEFFIDKALLT*SVNSFC Trigger: ACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTT...ATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | GCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATTGTCAGTAAATTCTAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: ASSKSSCSKALLTLSVNSKALLT*SVNSFC Trigger: ACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTT...AGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 |
||
| CDS-3UTR CAA 90 bp | GTAAATTCTTTCTGTTTAGCTTTGACAATGGATTCAATCTCTTTCATGGCAGCTAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: VNSFCLALTMDSISFMAAKALLT*SVNSFC Trigger: ACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTT...AGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420442.5 ENST00000450178.5 |
||
| CDS CCA 72 bp | ACCCGGAGCAAAGCCCCGGCTCTCCCCCGCCACATCTaGCCGGCGGCCTATCTAGCCGTGGTCACTCGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: TRSKAPALPRHI*PAAYLAVVTRG Trigger: CCCACGAGTGACCACGGCTAGATAGGCCGCCGGCCAGATGTGGCGGGGGAGAGCCGGGGCTTTGCTCCGGGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000450178.5 |
||
| CDS GCA 72 bp | CCCATGGGCCGCCGCAGTTCCAACAGCGGGGATAATTaGTTCCCGCCTGCGACGCAGCATCGCAGCTTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PMGRRSSNSGDN*FPPATQHRSLA Trigger: CGCTAAGCTGCGATGCTGCGTCGCAGGCGGGAAGCAATTATCCCCGCTGTTGGAACTGCGGCGGCCCATGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000450178.5 ENST00000485599.5 |
||
| CDS GCA 72 bp | TCTGGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTaGTGGAGCTTCGCTGTATCAACTCTGAAGGAACGG | + |
|
Preference number: 6 (lower is better) Translates to: SGWTRRCSCWYL*WSFAVSTLKER Trigger: CCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS GCA 72 bp | GACCTCTGGCTGAAGAAATCTGGGTGGACAAGACGCTaGAGTTGCTGGTACCTGTGCTGGAGCTTCGCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: DLWLKKSGWTRR*SCWYLCWSFAV Trigger: TACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAGCCAGAGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS CCA 72 bp | GGGTGGACAAGACGCTGCAGTTGCTGGTACCTGTGCTaGAGCTTCGCTGTATCAACTCTGAAGGAACGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: GWTRRCSCWYLC*SFAVSTLKERL Trigger: CAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS CAA 72 bp | CTGGCTGAAGAAATCTGGGTGGACAAGACGCTGCAGTaGCTGGTACCTGTGCTGGAGCTTCGCTGTATCAAC | + |
|
Preference number: 6 (lower is better) Translates to: LAEEIWVDKTLQ*LVPVLELRCIN Trigger: GTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS CAA 90 bp | CTGAGACCTCTGGCTGAAGAAATCTGGGTGGACAAGACGCTGCAGTaGCTGGTACCTGTGCTGGAGCTTCGCTGTATCAACTCTGAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LRPLAEEIWVDKTLQ*LVPVLELRCINSEG Trigger: TCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAGCCAGAGGTCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
||
| CDS GCA 72 bp | TGGCTGAAGAAATCTGGGTGGACAAGACGCTGCAGTTaGTGGTACCTGTGCTGGAGCTTCGCTGTATCAACT | + |
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Preference number: 6 (lower is better) Translates to: WLKKSGWTRRCS*WYLCWSFAVST Trigger: AGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
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| CDS CCA 72 bp | CTGAAGAAATCTGGGTGGACAAGACGCTGCAGTTGCTaGTACCTGTGCTGGAGCTTCGCTGTATCAACTCTG | + |
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Preference number: 6 (lower is better) Translates to: LKKSGWTRRCSC*YLCWSFAVSTL Trigger: CAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGCAACTGCAGCGTCTTGTCCACCCAGATTTCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000216027.8 ENST00000398941.6 ENST00000420442.5 ENST00000483861.5 ENST00000485599.5 ENST00000495977.1 |
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| CDS TCA 72 bp | GCTGGTACCTGTGCTGGAGCTTCGCTGTATCAACTCTaGAGGAACGGTTGCCTATTCATTCAAGTCTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGTCAGASLYQL*RNGCLFIQVFQ Trigger: CTGGAAGACTTGAATGAATAGGCAACCGTTCCTTCAGAGTTGATACAGCGAAGCTCCAGCACAGGTACCAGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000483861.5 ENST00000495977.1 |
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| CDS CAA 90 bp | TCCTTGGCTTCTTCAAAGTCATCTTGTTCAAAAGCACTGCTCACATaGTCAGTAAATTCTTTCTGTTTAGCTTACAAGGTACAGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SLASSKSSCSKALLT*SVNSFCLAYKVQSS Trigger: AGAGGACTGTACCTTGTAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAGATGACTTTGAAGAAGCCAAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000398941.6 |
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