Pregenerated sensors for HPRT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000165704

Ensembl transcript IDs: ENST00000298556.8, ENST00000462974.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCTCCCTGCCGCCCTCGCGTGACGTAAAGCCGAACCCGGGAAACTaGCCGCCCCCGCCTGCGGGGTTCCCTGGGCCCGGCCGCCCGAGC	+
Preference number: 5 (lower is better) Translates to: SSLPPSRDVKPNPGN*PPPPAGFPGPGRPS Trigger: GCTCGGGCGGCCGGGCCCAGGGAACCCCGCAGGCGGGGGCGGCCAGTTTCCCGGGTTCGGCTTTACGTCACGCGAGGGCGGCAGGGAGGA 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462974.5
CDS TCA 90 bp	ACTAATCCCAAACCCCGCCATTCCGTCCTCCCTGCCGCCCTCGCGTaGCGTAAAGCCGAACCCGGGAAACTGGCCGCCCCCGCCTGCGGG	+
Preference number: 5 (lower is better) Translates to: TNPKPRHSVLPAALA*RKAEPGKLAAPACG Trigger: CCCGCAGGCGGGGGCGGCCAGTTTCCCGGGTTCGGCTTTACGTCACGCGAGGGCGGCAGGGAGGACGGAATGGCGGGGTTTGGGATTAGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462974.5
CDS GCA 72 bp	CGTAAAGCCGAACCCGGGAAACTGGCCGCCCCCGCCTaGGGGGTTCCCTGGGCCCGGCCGCCCGAGCCCGCA	+
Preference number: 6 (lower is better) Translates to: RKAEPGKLAAPA*GVPWARPPEPA Trigger: TGCGGGCTCGGGCGGCCGGGCCCAGGGAACCCCGCAGGCGGGGGCGGCCAGTTTCCCGGGTTCGGCTTTACG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000462974.5
CDS CCA 72 bp	CCGCCCTCGCGTGACGTAAAGCCGAACCCGGGAAACTaGCCGCCCCCGCCTGCGGGGTTCCCTGGGCCCGGC	+
Preference number: 6 (lower is better) Translates to: PPSRDVKPNPGN*PPPPAGFPGPG Trigger: GCCGGGCCCAGGGAACCCCGCAGGCGGGGGCGGCCAGTTTCCCGGGTTCGGCTTTACGTCACGCGAGGGCGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462974.5
CDS TCA 72 bp	GCGGGTCGCCATAACGGAGCCGGCCGGCGCGCGGGCTaGCTGCTCAGGAGGAGGAAGCCGGTGGCGGAGCAG	+
Preference number: 6 (lower is better) Translates to: AGRHNGAGRRAG*LLRRRKPVAEQ Trigger: CTGCTCCGCCACCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCCGGCTCCGTTATGGCGACCCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000298556.8
CDS TCA 72 bp	AAACCCCGCCATTCCGTCCTCCCTGCCGCCCTCGCGTaGCGTAAAGCCGAACCCGGGAAACTGGCCGCCCCC	+
Preference number: 6 (lower is better) Translates to: KPRHSVLPAALA*RKAEPGKLAAP Trigger: GGGGGCGGCCAGTTTCCCGGGTTCGGCTTTACGTCACGCGAGGGCGGCAGGGAGGACGGAATGGCGGGGTTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462974.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu