Pregenerated sensors for HOXC8 (Homo sapiens)
Ensembl gene IDs: ENSG00000037965Ensembl transcript IDs: ENST00000040584.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGGCCCAACAGAATAGAAATCAAACAGCGAAGGAGAGGAAGGCATaGGCCCGAGTGACCATGGGATGGTTAGGTAGGATTTTAGAGGCG | + |
|
Preference number: 1 (lower is better) Translates to: RAQQNRNQTAKERKA*ARVTMGWLGRILEA Trigger: CGCCTCTAAAATCCTACCTAACCATCCCATGGTCACTCGGGCCCATGCCTTCCTCTCCTTCGCTGTTTGATTTCTATTCTGTTGGGCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR TCA 90 bp | GAGTGGGGGAAGTCCAAAGGTAATAAAACCAGAGCTGCAAGTATCTaGCAGGTAGTTAGAGTTGTGAGTGTCATTCTATTCTCTATAAAA | + |
|
Preference number: 1 (lower is better) Translates to: EWGKSKGNKTRAASI*QVVRVVSVILFSIK Trigger: TTTTATAGAGAATAGAATGACACTCACAACTCTAACTACCTGTCAGATACTTGCAGCTCTGGTTTTATTACCTTTGGACTTCCCCCACTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR-3UTR TCA 90 bp | TACTCTACTGGGGTTAGAAGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCGAGGTGGGAGTGTGGTaGGAGACAGACCGAGGAGCA | + |
|
Preference number: 2 (lower is better) Translates to: YSTGVRSTIKAHRTGGLGEVGVW*ETDRGA Trigger: TGCTCCTCGGTCTGTCTCTCACCACACTCCCACCTC...GCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCTTCTAACCCCAGTAGAGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR-3UTR GCA 90 bp | TGGGCCCGAGTGACCATGGGATGGTTAGGTAGGATTTTAGAGGCGACTGCAGGCCCACAAGTCCTTTTCTaGATTTCGAGGGGGCTCCCC | + |
|
Preference number: 2 (lower is better) Translates to: WARVTMGWLGRILEATAGPQVLF*ISRGLP Trigger: GGGGAGCCCCCTCGAAATGCAGAAAAGGACTTGTGG...GCCTGCAGTCGCCTCTAAAATCCTACCTAACCATCCCATGGTCACTCGGGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR-3UTR TCA 90 bp | AGAGACAGACCGAGGAGCACGGAGGCCAGGTCTCAGACCTTAAAATCCAGGAAGAGAGCTGCAAGTATCTaGCAGGTAGTTAGAGTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: RDRPRSTEARSQTLKSRKRAASI*QVVRVV Trigger: CACAACTCTAACTACCTGTCAGATACTTGCAGCTCT...CTTCCTGGATTTTAAGGTCTGAGACCTGGCCTCCGTGCTCCTCGGTCTGTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCCAAACAAATAAAGAGTaGGGGAAGTCCAAAGGTAAT | + |
|
Preference number: 2 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPQTNKE*GKSKGN Trigger: ATTACCTTTGGACTTCCCCCACTCTTTATTTGTTTG...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR-3UTR GCA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTGATTTTAGAGGCGACTaGAGGCTCCTATCTACCCTT | + |
|
Preference number: 2 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSDFRGD*RLLSTL Trigger: AAGGGTAGATAGGAGCCTGCAGTCGCCTCTAAAATC...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR CAA 90 bp | CTTCTTCTTTTTATTATTATGACTCACGTATACAATACAAAGTACTaGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATTCATA | + |
|
Preference number: 2 (lower is better) Translates to: LLLFIIMTHVYNTKY*DQEQGCRDTKSTFI Trigger: TATGAATGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATACGTGAGTCATAATAATAAAAAGAAGAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR CCA 72 bp | CAGAATAGAAATCAAACAGCGAAGGAGAGGAAGGCATaGGCCCGAGTGACCATGGGATGGTTAGGTAGGATT | + |
|
Preference number: 3 (lower is better) Translates to: QNRNQTAKERKA*ARVTMGWLGRI Trigger: AATCCTACCTAACCATCCCATGGTCACTCGGGCCCATGCCTTCCTCTCCTTCGCTGTTTGATTTCTATTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR TCA 72 bp | AAGTCCAAAGGTAATAAAACCAGAGCTGCAAGTATCTaGCAGGTAGTTAGAGTTGTGAGTGTCATTCTATTC | + |
|
Preference number: 3 (lower is better) Translates to: KSKGNKTRAASI*QVVRVVSVILF Trigger: GAATAGAATGACACTCACAACTCTAACTACCTGTCAGATACTTGCAGCTCTGGTTTTATTACCTTTGGACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GGGGTTAGAAGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTGAACCCCAGGCCAGCTaGCTCCCCGGGACTGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GVRSTIKAHRTGGLGSLSEPQAS*LPGTGL Trigger: CAGCCCAGTCCCGGGGAGCCAGCTGGCCTGGGGTTC...ACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCTTCTAACCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTTGGTGCGAAGCGTGCTaGAAGCCGGGCGCCGAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: STIKAHRTGGLGSLSCWVWCEAC*KPGAEP Trigger: CGGCTCGGCGCCCGGCTTCCAGCACGCTTCGCACCA...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTACGTGGTGCGAAGCGTaGTGGAAGCCGGGCGCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: STIKAHRTGGLGSLSCWVTWCEA*WKPGAE Trigger: CTCGGCGCCCGGCTTCCAGCACGCTTCGCACCACGT...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | AGAGACAGACCGAGGAGCACGGAGGCCAGGTCTCAGACCTTAAAATCCAGGAAGCCAGCGCATGGCTCCTaGCCACGCTCTGAGGGAACC | + |
|
Preference number: 4 (lower is better) Translates to: RDRPRSTEARSQTLKSRKPAHGS*PRSEGT Trigger: GGTTCCCTCAGAGCGTGGGCAGGAGCCATGCGCTGG...CTTCCTGGATTTTAAGGTCTGAGACCTGGCCTCCGTGCTCCTCGGTCTGTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | AGAGACAGACCGAGGAGCACGGAGGCCAGGTCTCAGACCTTAAAATCCAGGAAGAAGTTTGCCGTCCACTaGGCCTCCCCGGAGCGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RDRPRSTEARSQTLKSRKKFAVH*ASPERG Trigger: CCCACGCTCCGGGGAGGCGCAGTGGACGGCAAACTT...CTTCCTGGATTTTAAGGTCTGAGACCTGGCCTCCGTGCTCCTCGGTCTGTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTCTCATGCTGGGTACATaGAAACCCGCGGCCCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: STIKAHRTGGLGSLSCWVLMLGT*KPAAPS Trigger: GGAGGGGGCCGCGGGTTTTCATGTACCCAGCATGAG...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | CAGGTCTCAGACCTTAAAATCCAGGAAGGACTCAGAAGGGTGGGGGCAGGGACAAGCCTGAGTTGGAGATaGCGGAGGTGCCGTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QVSDLKIQEGLRRVGAGTSLSWR*RRCRGG Trigger: TCCACCACGGCACCTCCGGCATCTCCAACTCAGGCT...TGTCCCTGCCCCCACCCTTCTGAGTCCTTCCTGGATTTTAAGGTCTGAGACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | CAGGTCTCAGACCTTAAAATCCAGGAAGGACTCAGAAGGGTGGGGGCAGGGACAGCTGGTAGCCTGAGTTaGAGATGCCGGAGGTGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: QVSDLKIQEGLRRVGAGTAGSLS*RCRRCR Trigger: ACGGCACCTCCGGCATCTCCAACTCAGGCTACCAGC...TGTCCCTGCCCCCACCCTTCTGAGTCCTTCCTGGATTTTAAGGTCTGAGACCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | TGGGCCCGAGTGACCATGGGATGGTTAGGTAGGATTTTAGAGGCGACTGCAGGCTGGAGAACAGGGGGTTaGCGAAGTAGGAGCTCATGC | + |
|
Preference number: 4 (lower is better) Translates to: WARVTMGWLGRILEATAGWRTGG*RSRSSC Trigger: GCATGAGCTCCTACTTCGTCAACCCCCTGTTCTCCA...GCCTGCAGTCGCCTCTAAAATCCTACCTAACCATCCCATGGTCACTCGGGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCGTTCTGCTGGTAGCCTaGGTTGGAGATGCCGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPVLLVA*VGDAGG Trigger: ACCTCCGGCATCTCCAACTCAGGCTACCAGCAGAAC...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | GGGGTTAGAAGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTGTCAGTCCCAGGGCATaGGAGACTTCAATCCGACGT | + |
|
Preference number: 4 (lower is better) Translates to: GVRSTIKAHRTGGLGSLSVSPRA*ETSIRR Trigger: ACGTCGGATTGAAGTCTCTCATGCCCTGGGACTGAC...ACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCTTCTAACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTTCCCCGGGACTGGGCTaGGCTGGTGGGCTGGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSSPGLG*AGGLGA Trigger: AGCCCCCAGCCCACCAGCCCAGCCCAGTCCCGGGGA...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | CAGGTCTCAGACCTTAAAATCCAGGAAGGACTCAGAAGGGTGGGGGCAGGGACAGTGTGGGGCAAGGAGTaGGACAGAGAGTCCGAACTT | + |
|
Preference number: 4 (lower is better) Translates to: QVSDLKIQEGLRRVGAGTVWGKE*DRESEL Trigger: AAGTTCGGACTCTCTGTCTCACTCCTTGCCCCACAC...TGTCCCTGCCCCCACCCTTCTGAGTCCTTCCTGGATTTTAAGGTCTGAGACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTCCACAAGTCCTTTTCTaGATTTCGAGGGGGCTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: STIKAHRTGGLGSLSCWVPQVLF*ISRGLP Trigger: GGGGAGCCCCCTCGAAATGCAGAAAAGGACTTGTGG...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GGGGTTAGAAGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTAGTAGGAGCTCATGCTaGGTACATGAAAACCCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: GVRSTIKAHRTGGLGSLSSRSSC*VHENPR Trigger: CCGCGGGTTTTCATGTACCCAGCATGAGCTCCTACT...ACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCTTCTAACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | CAGGTCTCAGACCTTAAAATCCAGGAAGGACTCAGAAGGGTGGGGGCAGGGACATTACAGTCGGGATATTaGACCACGCTCGCCTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QVSDLKIQEGLRRVGAGTLQSGY*TTLASC Trigger: GCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAA...TGTCCCTGCCCCCACCCTTCTGAGTCCTTCCTGGATTTTAAGGTCTGAGACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCCGAAGTAGGAGCTCATaGTGGGTACATGAAAACCCG | + |
|
Preference number: 4 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPRSRSS*WVHENP Trigger: CGGGTTTTCATGTACCCAGCATGAGCTCCTACTTCG...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 53% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | TGGGCCCGAGTGACCATGGGATGGTTAGGTAGGATTTTAGAGGCGACTGCAGGCGATTTTAGAGGCGACTaGAGGCTCCTATCTACCCTT | + |
|
Preference number: 4 (lower is better) Translates to: WARVTMGWLGRILEATAGDFRGD*RLLSTL Trigger: AAGGGTAGATAGGAGCCTGCAGTCGCCTCTAAAATC...GCCTGCAGTCGCCTCTAAAATCCTACCTAACCATCCCATGGTCACTCGGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | AGAGACAGACCGAGGAGCACGGAGGCCAGGTCTCAGACCTTAAAATCCAGGAAGCTGGGAGACGAGTTTTaGTTTAAGTGGCCTTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RDRPRSTEARSQTLKSRKLGDEF*FKWPCP Trigger: AGGACAAGGCCACTTAAATCAAAACTCGTCTCCCAG...CTTCCTGGATTTTAAGGTCTGAGACCTGGCCTCCGTGCTCCTCGGTCTGTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATTGGAGGCGTCTCCGTaGCAGCTAAGCGAGCACGGG | + |
|
Preference number: 4 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTLEASP*QLSEHG Trigger: CCCGTGCTCGCTTAGCTGCCACGGAGACGCCTCCAA...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTCGCCTCCCCGGAGCGTaGGGTCTCATCCATGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSRLPGA*GLIHGN Trigger: GTTTCCATGGATGAGACCCCACGCTCCGGGGAGGCG...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTAAGGAGAGGAAGGCATaGGCCCGAGTGACCATGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSKERKA*ARVTMG Trigger: TCCCATGGTCACTCGGGCCCATGCCTTCCTCTCCTT...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR TCA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATGGTGGAAGAAGTCTTaGACGTGGTGCGAAGCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTWWKKS*TWCEAC Trigger: GCACGCTTCGCACCACGTTCAAGACTTCTTCCACCA...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTWRCRR*RGGRSL Trigger: AAGACTTCTTCCACCACGGCACCTCCGGCATCTCCA...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | AGAGACAGACCGAGGAGCACGGAGGCCAGGTCTCAGACCTTAAAATCCAGGAAGCTTTTTCAAGATTATTaGAGGTTCCCTTTAGGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: RDRPRSTEARSQTLKSRKLFQDY*RFPLGS Trigger: ACTACCTAAAGGGAACCTGCAATAATCTTGAAAAAG...CTTCCTGGATTTTAAGGTCTGAGACCTGGCCTCCGTGCTCCTCGGTCTGTCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR GCA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCTTCTTTCGAGCACATTaGATAAACAGAGAATTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPFFRAH*INREFK Trigger: CTTGAATTCTCTGTTTATGCAATGTGCTCGAAAGAA...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTAAGGGGCGTAGCCATAGAATTTaGAGGCGTCTCCGTGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLNLSATIKRNFKGVAKGRSHRI*RRLRGS Trigger: GCTGCCACGGAGACGCCTCCAAATTCTATGGCTACG...CCCCTTAGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTAAGGGGCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LLNLSATIKRNFKGVAKGHKGTV*GAPRSH Trigger: ATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATG...CCCCTTAGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTAAGGGGGTGGGGTCTCATCCATaGAAACATGAGGCTGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LLNLSATIKRNFKGVAKGVGSHP*KHEAGR Trigger: TCTCCCAGCCTCATGTTTCCATGGATGAGACCCCAC...CCCCTTAGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTCGAGTGACCATGGGATaGTTAGGTAGGATTTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSRVTMG*LGRILE Trigger: CTCTAAAATCCTACCTAACCATCCCATGGTCACTCG...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACAACAATACAAAGTACTTaGACCAGGAACAGGGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTTIQST*TRNRAV Trigger: GACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGT...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCAATTTATCTGCTACCATAAAACGAAACTTCAAGGGAGTTGCTAAGGGGCAAACAAATAAAGAGTaGGGGAAGTCCAAAGGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: LLNLSATIKRNFKGVAKGQTNKE*GKSKGN Trigger: ATTACCTTTGGACTTCCCCCACTCTTTATTTGTTTG...CCCCTTAGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| 3UTR CAA 72 bp | TTTATTATTATGACTCACGTATACAATACAAAGTACTaGGACCAGGAACAGGGCTGTCGGGACACAAAATCT | + |
|
Preference number: 4 (lower is better) Translates to: FIIMTHVYNTKY*DQEQGCRDTKS Trigger: AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATACGTGAGTCATAATAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 90 bp | AGCCGGGCGCCGAGCCGCCGGGCCCGTACACCAGCGCATGGCTCCTaGCCACGCTCTGAGGGAACCGGCAGTCGTAATAGGCCGGTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRAPSRRARTPAHGS*PRSEGTGSRNRPVP Trigger: TGGAACCGGCCTATTACGACTGCCGGTTCCCTCAGAGCGTGGGCAGGAGCCATGCGCTGGTGTACGGGCCCGGCGGCTCGGCGCCCGGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 90 bp | GCGAGCACGGGTTCTGCTGGTAGCCTGAGTTGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTTGAACGTGGTGCGAAGCGTGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ASTGSAGSLSWRCRR*RGGRSLERGAKRAG Trigger: TCCAGCACGCTTCGCACCACGTTCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCAGGCTACCAGCAGAACCCGTGCTCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS CCA 90 bp | ATTGCACCACGCTCGCCTCTTGCTGAGCCCCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCATAGAATTTGGAGGCGTCTCCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: IAPRSPLAEPHKGTV*GAPRSHRIWRRLRG Trigger: GCCACGGAGACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTGCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCCACCACGCTCGCCTCTaGCTGAGCCCCATAAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPHHARL*LSPIKG Trigger: TCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTG...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTATACCGGCTGTAAGTTaGCCGTCCACTGCGCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: STIKAHRTGGLGSLSCWVIPAVS*PSTAPP Trigger: GGGAGGCGCAGTGGACGGCAAACTTACAGCCGGTAT...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | TGGGCCCGAGTGACCATGGGATGGTTAGGTAGGATTTTAGAGGCGACTGCAGGCGTGGTGGAAGAAGTCTaGAACGTGGTGCGAAGCGTG | + |
|
Preference number: 5 (lower is better) Translates to: WARVTMGWLGRILEATAGVVEEV*NVVRSV Trigger: CACGCTTCGCACCACGTTCAAGACTTCTTCCACCAC...GCCTGCAGTCGCCTCTAAAATCCTACCTAACCATCCCATGGTCACTCGGGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | GGGCAAGGAGTGAGACAGAGAGTCCGAACTTTTCACTGTTTCTCCGTCTCCCCCTTTACAGTCGGGATATaGCACCACGCTCGCCTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GQGVRQRVRTFHCFSVSPFTVGI*HHARLL Trigger: CAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAA...GGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTCTCTGTCTCACTCCTTGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTCCCGGCAGTTTATCCTaGTTGTTCTCCTTTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: STIKAHRTGGLGSLSCWVPGSLS*LFSFFH Trigger: GTGGAAAAAGGAGAACAACAAGGATAAACTGCCGGG...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTTCGCCGGCTTTGTATTaGGAGAACAGGGGGTTGACG | + |
|
Preference number: 5 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSSPALY*ENRGLT Trigger: CGTCAACCCCCTGTTCTCCAAATACAAAGCCGGCGA...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | AGCACAATAAAAGCGCACAGGACCGGCGGGCTAGGCAGTCTCAGTTGTTGGGTTAGGCAGTCTCAGTTGTaGGGTTTTCTTAGTGAAATA | + |
|
Preference number: 5 (lower is better) Translates to: STIKAHRTGGLGSLSCWVRQSQL*GFLSEI Trigger: TATTTCACTAAGAAAACCCAACAACTGAGACTGCCT...AACCCAACAACTGAGACTGCCTAGCCCGCCGGTCCTGTGCGCTTTTATTGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATCGCTACTGTTAGTGTaGGCGGAGGATTTACAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTSLLLV*AEDLQS Trigger: CGACTGTAAATCCTCCGCCAACACTAACAGTAGCGA...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | GTATACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTGCTAGGCAGTCTCAGTaGTTGGGTTTTCTTAGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: VYNTKYLDQEQGCRDTKSARQSQ*LGFLSE Trigger: TTCACTAAGAAAACCCAACAACTGAGACTGCCTAGC...AGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS-3UTR CAA 90 bp | TACAATACAAAGTACTTGGACCAGGAACAGGGCTGTCGGGACACAAAATCTACATACAATACAAAGTACTaGGACCAGGAACAGGGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: YNTKYLDQEQGCRDTKSTYNTKY*DQEQGC Trigger: ACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA...TGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 72 bp | CCGAGCCGCCGGGCCCGTACACCAGCGCATGGCTCCTaGCCACGCTCTGAGGGAACCGGCAGTCGTAATAGG | + |
|
Preference number: 6 (lower is better) Translates to: PSRRARTPAHGS*PRSEGTGSRNR Trigger: CCTATTACGACTGCCGGTTCCCTCAGAGCGTGGGCAGGAGCCATGCGCTGGTGTACGGGCCCGGCGGCTCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS TCA 72 bp | TTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTTaGACGTGGTGCGAAGCGTGCTGGAAGCCGGGCGCC | + |
|
Preference number: 6 (lower is better) Translates to: LEMPEVPWWKKS*TWCEACWKPGA Trigger: GGCGCCCGGCTTCCAGCACGCTTCGCACCACGTTCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS CAA 72 bp | GTTGGAGATGCCGGAGGTGCCGTGGTGGAAGAAGTCTaGAACGTGGTGCGAAGCGTGCTGGAAGCCGGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VGDAGGAVVEEV*NVVRSVLEAGR Trigger: GCGCCCGGCTTCCAGCACGCTTCGCACCACGTTCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS TCA 72 bp | GTGGCAGCTAAGCGAGCACGGGTTCTGCTGGTAGCCTaGGTTGGAGATGCCGGAGGTGCCGTGGTGGAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: VAAKRARVLLVA*VGDAGGAVVEE Trigger: TTCTTCCACCACGGCACCTCCGGCATCTCCAACTCAGGCTACCAGCAGAACCCGTGCTCGCTTAGCTGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 72 bp | CCAAGGTCTGATACCGGCTGTAAGTTTGCCGTCCACTaGGCCTCCCCGGAGCGTGGGGTCTCATCCATGGAA | + |
|
Preference number: 6 (lower is better) Translates to: PRSDTGCKFAVH*ASPERGVSSME Trigger: TTCCATGGATGAGACCCCACGCTCCGGGGAGGCGCAGTGGACGGCAAACTTACAGCCGGTATCAGACCTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 72 bp | GCGAGCACGGGTTCTGCTGGTAGCCTGAGTTGGAGATaGCGGAGGTGCCGTGGTGGAAGAAGTCTTGAACGT | + |
|
Preference number: 6 (lower is better) Translates to: ASTGSAGSLSWR*RRCRGGRSLER Trigger: ACGTTCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCAGGCTACCAGCAGAACCCGTGCTCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS CCA 72 bp | CGCTCGCCTCTTGCTGAGCCCCATAAAGGGACTGTCTaGGGAGCGCCTCGTAGCCATAGAATTTGGAGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RSPLAEPHKGTV*GAPRSHRIWRR Trigger: ACGCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS GCA 72 bp | GGTTCTGCTGGTAGCCTGAGTTGGAGATGCCGGAGGTaGCGTGGTGGAAGAAGTCTTGAACGTGGTGCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GSAGSLSWRCRR*RGGRSLERGAK Trigger: CTTCGCACCACGTTCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCAGGCTACCAGCAGAACC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||
| CDS TCA 72 bp | CTCATCCATGGAAACATGAGGCTGGGAGACGAGTTTTaGTTTAAGTGGCCTTGTCCTTCGCTACTGTTAGTG | + |
|
Preference number: 6 (lower is better) Translates to: LIHGNMRLGDEF*FKWPCPSLLLV Trigger: CACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAAAACTCGTCTCCCAGCCTCATGTTTCCATGGATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000040584.6 |
||