RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HNRNPK (Homo sapiens)

Ensembl gene IDs: ENSG00000165119

Ensembl transcript IDs: ENST00000376256.2, ENST00000481820.6, ENST00000492865.1

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTGGTTTTGGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTaGTTAAGGCTTCTTCCAGCAAGATTAGTATTGAATGTCTTCATT +
Preference number: 1 (lower is better)
Translates to: SGFGSSFHQRNEKFA*LRLLPARLVLNVFI
Trigger: AATGAAGACATTCAATACTAATCTTGCTGGAAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCCAAAACCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000481820.6
3UTR-3UTR TCA 90 bp TTTGGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTGGTTAAGGCTTCTTAGGTCCCCAAAAGGTTaGGACACCATGGCTTCTAAA +
Preference number: 2 (lower is better)
Translates to: FGSSFHQRNEKFAWLRLLRSPKG*DTMASK
Trigger: TTTAGAAGCCATGGTGTCTCAACCTTTTGGGGACCT...AAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000481820.6
3UTR CCA 72 bp GGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTaGTTAAGGCTTCTTCCAGCAAGATTAGTATTGAAT +
Preference number: 3 (lower is better)
Translates to: GSSFHQRNEKFA*LRLLPARLVLN
Trigger: ATTCAATACTAATCTTGCTGGAAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS-3UTR CCA 90 bp GGCATGGCCTGTGCCATATGGCAGACTGTGATTTGTTGTCGATTTAGTTATCTAATGGCCTGTGCCATATaGCAGACTGTGATTTGTTGT +
Preference number: 4 (lower is better)
Translates to: GMACAIWQTVICCRFSYLMACAI*QTVICC
Trigger: ACAACAAATCACAGTCTGCCATATGGCACAGGCCAT...TAGATAACTAAATCGACAACAAATCACAGTCTGCCATATGGCACAGGCCATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS-3UTR CCA 90 bp AAGTTTGCTTGGTTAAGGCTTCTTCCAGCAAGATTAGTATTGAATGTCTTCATTTGTCCTGTAGAGGCATaGCCTGTGCCATATGGCAGA +
Preference number: 4 (lower is better)
Translates to: KFAWLRLLPARLVLNVFICPVEA*PVPYGR
Trigger: TCTGCCATATGGCACAGGCCATGCCTCTACAGGACA...AATGAAGACATTCAATACTAATCTTGCTGGAAGAAGCCTTAACCAAGCAAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS-3UTR TCA 90 bp TTTGGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTGGTTAAGGCTTCTTCCATATGGCAGACTGTaGTTTGTTGTCGATTTAGTT +
Preference number: 4 (lower is better)
Translates to: FGSSFHQRNEKFAWLRLLPYGRL*FVVDLV
Trigger: AACTAAATCGACAACAAATCACAGTCTGCCATATGG...AAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS-3UTR CCA 90 bp TTTGGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTGGTTAAGGCTTCTTAATGAGAAGTTTGCTTaGTTAAGGCTTCTTCCAGCA +
Preference number: 4 (lower is better)
Translates to: FGSSFHQRNEKFAWLRLLNEKFA*LRLLPA
Trigger: TGCTGGAAGAAGCCTTAACCAAGCAAACTTCTCATT...AAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS CCA 90 bp GGGACTGAAACACTGGCATTGTACTGCATTGGTCATTGGCGTTCGTaGATGTTGGCATTGGGCATGGGCATTCAATCAGAAGTTGTCAAG +
Preference number: 5 (lower is better)
Translates to: GTETLALYCIGHWRS*MLALGMGIQSEVVK
Trigger: CTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCAGTGTTTCAGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CCA 90 bp GATGTTGGCATTGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATaGTACCCGTTTGGCAACGAGCACATTTTTGGGCATAGCCAACCA +
Preference number: 5 (lower is better)
Translates to: DVGIGHGHSIRSCQV*YPFGNEHIFGHSQP
Trigger: TGGTTGGCTATGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CCA 90 bp TGGCATTGTACTGCATTGGTCATTGGCGTTCGTGGATGTTGGCATTaGGCATGGGCATTCAATCAGAAGTTGTCAAGTATGGTACCCGTT +
Preference number: 5 (lower is better)
Translates to: WHCTALVIGVRGCWH*AWAFNQKLSSMVPV
Trigger: AACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CCA 90 bp AAACACTGGCATTGTACTGCATTGGTCATTGGCGTTCGTGGATGTTaGCATTGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATGGTA +
Preference number: 5 (lower is better)
Translates to: KHWHCTALVIGVRGC*HWAWAFNQKLSSMV
Trigger: TACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCAGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS-3UTR CAA 90 bp TTTGGCAGCAGTTTTCACCAGAGAAATGAGAAGTTTGCTTGGTTAAGGCTTCTTTACAGCACCAATCATTaGTCCTGTAGAGGCATGGCC +
Preference number: 5 (lower is better)
Translates to: FGSSFHQRNEKFAWLRLLYSTNH*SCRGMA
Trigger: GGCCATGCCTCTACAGGACAAATGATTGGTGCTGTA...AAGAAGCCTTAACCAAGCAAACTTCTCATTTCTCTGGTGAAAACTGCTGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000481820.6
CDS CCA 72 bp GGGACTGAAACACTGGCATTGTACTGCATTGGTCATTaGCGTTCGTGGATGTTGGCATTGGGCATGGGCATT +
Preference number: 6 (lower is better)
Translates to: GTETLALYCIGH*RSWMLALGMGI
Trigger: AATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCAGTGTTTCAGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 90 bp GGCGTTCGTGGATGTTGGCATTGGGCATGGGCATTCAATCAGAAGTaGTCAAGTATGGTACCCGTTTGGCAACGAGCACATTTTTGGGCA +
Preference number: 6 (lower is better)
Translates to: GVRGCWHWAWAFNQK*SSMVPVWQRAHFWA
Trigger: TGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 72 bp GTCAAGTATGGTACCCGTTTGGCAACGAGCACATTTTaGGGCATAGCCAACCAGGGTTTTCACATGGGCGTT +
Preference number: 6 (lower is better)
Translates to: VKYGTRLATSTF*GIANQGFHMGV
Trigger: AACGCCCATGTGAAAACCCTGGTTGGCTATGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 90 bp CTGGCATTGTACTGCATTGGTCATTGGCGTTCGTGGATGTTGGCATaGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATGGTACCCGT +
Preference number: 6 (lower is better)
Translates to: LALYCIGHWRSWMLA*GMGIQSEVVKYGTR
Trigger: ACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 72 bp GGATGTTGGCATTGGGCATGGGCATTCAATCAGAAGTaGTCAAGTATGGTACCCGTTTGGCAACGAGCACAT +
Preference number: 6 (lower is better)
Translates to: GCWHWAWAFNQK*SSMVPVWQRAH
Trigger: ATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 90 bp TTGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATGGTACCCGTTaGGCAACGAGCACATTTTTGGGCATAGCCAACCAGGGTTTTCAC +
Preference number: 6 (lower is better)
Translates to: LGMGIQSEVVKYGTR*ATSTFLGIANQGFH
Trigger: GTGAAAACCCTGGTTGGCTATGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 90 bp GAAACACTGGCATTGTACTGCATTGGTCATTGGCGTTCGTGGATGTaGGCATTGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATGGT +
Preference number: 6 (lower is better)
Translates to: ETLALYCIGHWRSWM*ALGMGIQSEVVKYG
Trigger: ACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTACAATGCCAGTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CCA 72 bp ACTGCATTGGTCATTGGCGTTCGTGGATGTTGGCATTaGGCATGGGCATTCAATCAGAAGTTGTCAAGTATG +
Preference number: 6 (lower is better)
Translates to: TALVIGVRGCWH*AWAFNQKLSSM
Trigger: CATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 72 bp GGCATTCAATCAGAAGTTGTCAAGTATGGTACCCGTTaGGCAACGAGCACATTTTTGGGCATAGCCAACCAG +
Preference number: 6 (lower is better)
Translates to: GIQSEVVKYGTR*ATSTFLGIANQ
Trigger: CTGGTTGGCTATGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS TCA 72 bp TCCTGCCTCAGACTCTTTTGTAGTTGGGATTATGAGTaGGCACCACTGCACCCAGCTTCACTATTCAAGTAT +
Preference number: 6 (lower is better)
Translates to: SCLRLFCSWDYE*APLHPASLFKY
Trigger: ATACTTGAATAGTGAAGCTGGGTGCAGTGGTGCTCACTCATAATCCCAACTACAAAAGAGTCTGAGGCAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000492865.1
CDS CCA 72 bp ATTGGGCATGGGCATTCAATCAGAAGTTGTCAAGTATaGTACCCGTTTGGCAACGAGCACATTTTTGGGCAT +
Preference number: 6 (lower is better)
Translates to: IGHGHSIRSCQV*YPFGNEHIFGH
Trigger: ATGCCCAAAAATGTGCTCGTTGCCAAACGGGTACCATACTTGACAACTTCTGATTGAATGCCCATGCCCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS CAA 72 bp TACTGCATTGGTCATTGGCGTTCGTGGATGTTGGCATaGGGCATGGGCATTCAATCAGAAGTTGTCAAGTAT +
Preference number: 6 (lower is better)
Translates to: YCIGHWRSWMLA*GMGIQSEVVKY
Trigger: ATACTTGACAACTTCTGATTGAATGCCCATGCCCAATGCCAACATCCACGAACGCCAATGACCAATGCAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000376256.2
CDS GCA 72 bp GACTCTTTTGTAGTTGGGATTATGAGTGAGCACCACTaGACCCAGCTTCACTATTCAAGTATTTTAATCTCA +
Preference number: 6 (lower is better)
Translates to: DSFVVGIMSEHH*TQLHYSSILIS
Trigger: TGAGATTAAAATACTTGAATAGTGAAGCTGGGTGCAGTGGTGCTCACTCATAATCCCAACTACAAAAGAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000492865.1