Pregenerated sensors for HNRNPD-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000272677Ensembl transcript IDs: ENST00000609552.1, ENST00000609575.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCGGTCCCGGGCGGCGACGGCAGGGAGAGTAGCTGCGGCAATCAGTaGGCGCGCGGTCCGCTGCGGCGCCTGGCGCTCCGCGGGCGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PVPGGDGRESSCGNQ*ARGPLRRLALRGRP Trigger: CGGACGCCCGCGGAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCTCCCTGCCGTCGCCGCCCGGGACCGG 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS GCA 90 bp | ACGGCAGGGAGAGTAGCTGCGGCAATCAGTGCGCGCGCGGTCCGCTaGGGCGCCTGGCGCTCCGCGGGCGTCCGGGTGGACAGCGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TAGRVAAAISARAVR*GAWRSAGVRVDSAR Trigger: CCTGGCGCTGTCCACCCGGACGCCCGCGGAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCTCCCTGCCGT 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS CCA 90 bp | AGAGTAGCTGCGGCAATCAGTGCGCGCGCGGTCCGCTGCGGCGCCTaGCGCTCCGCGGGCGTCCGGGTGGACAGCGCCAGGGGCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: RVAAAISARAVRCGA*RSAGVRVDSARGTG Trigger: CCCTGTGCCCCTGGCGCTGTCCACCCGGACGCCCGCGGAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS GCA 90 bp | CCTCAATGTCACCCGGTCCCGGGCGGCGACGGCAGGGAGAGTAGCTaGGGCAATCAGTGCGCGCGCGGTCCGCTGCGGCGCCTGGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: PQCHPVPGGDGRESS*GNQCARGPLRRLAL Trigger: GAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCTCCCTGCCGTCGCCGCCCGGGACCGGGTGACATTGAGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS CCA 90 bp | CAGAGATTGTGGAGGAGCCTGAGGAGCTGCCATTTATGGCCACCTTaGCCTCAAAGCAGGCACTTGCACGGAAGTCTGGGAAGCTGTCGT | + |
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Preference number: 5 (lower is better) Translates to: QRLWRSLRSCHLWPP*PQSRHLHGSLGSCR Trigger: ACGACAGCTTCCCAGACTTCCGTGCAAGTGCCTGCTTTGAGGCCAAGGTGGCCATAAATGGCAGCTCCTCAGGCTCCTCCACAATCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS GCA 90 bp | TGGAGAAACATAAGAAACCAGAGATTGTGGAGGAGCCTGAGGAGCTaGCATTTATGGCCACCTTGGCCTCAAAGCAGGCACTTGCACGGA | + |
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Preference number: 5 (lower is better) Translates to: WRNIRNQRLWRSLRS*HLWPPWPQSRHLHG Trigger: TCCGTGCAAGTGCCTGCTTTGAGGCCAAGGTGGCCATAAATGGCAGCTCCTCAGGCTCCTCCACAATCTCTGGTTTCTTATGTTTCTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS TCA 90 bp | AAAGCAGGCACTTGCACGGAAGTCTGGGAAGCTGTCGTGATTGGCTaGCACAACTGCAAAGTGGGAGCTGCTTCTTCGACCAAAAACAAA | + |
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Preference number: 5 (lower is better) Translates to: KAGTCTEVWEAVVIG*HNCKVGAASSTKNK Trigger: TTTGTTTTTGGTCGAAGAAGCAGCTCCCACTTTGCAGTTGTGTCAGCCAATCACGACAGCTTCCCAGACTTCCGTGCAAGTGCCTGCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS CCA 90 bp | ATGAAAAAGCTGAGCTCATGGAGAAACATAAGAAACCAGAGATTGTaGAGGAGCCTGAGGAGCTGCCATTTATGGCCACCTTGGCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: MKKLSSWRNIRNQRL*RSLRSCHLWPPWPQ Trigger: TTGAGGCCAAGGTGGCCATAAATGGCAGCTCCTCAGGCTCCTCCACAATCTCTGGTTTCTTATGTTTCTCCATGAGCTCAGCTTTTTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS GCA 72 bp | GGCGGCGACGGCAGGGAGAGTAGCTGCGGCAATCAGTaGGCGCGCGGTCCGCTGCGGCGCCTGGCGCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: GGDGRESSCGNQ*ARGPLRRLALR Trigger: GCGGAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCTCCCTGCCGTCGCCGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS GCA 72 bp | CACCCGGTCCCGGGCGGCGACGGCAGGGAGAGTAGCTaGGGCAATCAGTGCGCGCGCGGTCCGCTGCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: HPVPGGDGRESS*GNQCARGPLRR Trigger: GCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCTCCCTGCCGTCGCCGCCCGGGACCGGGTG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS GCA 72 bp | AGAGTAGCTGCGGCAATCAGTGCGCGCGCGGTCCGCTaGGGCGCCTGGCGCTCCGCGGGCGTCCGGGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: RVAAAISARAVR*GAWRSAGVRVD Trigger: GTCCACCCGGACGCCCGCGGAGCGCCAGGCGCCGCAGCGGACCGCGCGCGCACTGATTGCCGCAGCTACTCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609552.1 ENST00000609575.1 |
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| CDS CCA 72 bp | TGGAGGAGCCTGAGGAGCTGCCATTTATGGCCACCTTaGCCTCAAAGCAGGCACTTGCACGGAAGTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: WRSLRSCHLWPP*PQSRHLHGSLG Trigger: TCCCAGACTTCCGTGCAAGTGCCTGCTTTGAGGCCAAGGTGGCCATAAATGGCAGCTCCTCAGGCTCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS TCA 72 bp | ACTTGCACGGAAGTCTGGGAAGCTGTCGTGATTGGCTaGCACAACTGCAAAGTGGGAGCTGCTTCTTCGACC | + |
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Preference number: 6 (lower is better) Translates to: TCTEVWEAVVIG*HNCKVGAASST Trigger: GGTCGAAGAAGCAGCTCCCACTTTGCAGTTGTGTCAGCCAATCACGACAGCTTCCCAGACTTCCGTGCAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS GCA 72 bp | ATAAGAAACCAGAGATTGTGGAGGAGCCTGAGGAGCTaGCATTTATGGCCACCTTGGCCTCAAAGCAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: IRNQRLWRSLRS*HLWPPWPQSRH Trigger: GTGCCTGCTTTGAGGCCAAGGTGGCCATAAATGGCAGCTCCTCAGGCTCCTCCACAATCTCTGGTTTCTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS TCA 72 bp | GGAGAAGCTGGAGGAGTGAAGGTCTGGAGCTGCAGCTaGAGGATTGTAGAACATTCACTAATGACTTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: GEAGGVKVWSCS*RIVEHSLMTSA Trigger: AGCCGAAGTCATTAGTGAATGTTCTACAATCCTTCAGCTGCAGCTCCAGACCTTCACTCCTCCAGCTTCTCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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| CDS CCA 72 bp | CTTGAAGCATTGGAGTTGATGAAAAAGCTGAGCTCATaGAGAAACATAAGAAACCAGAGATTGTGGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LEALELMKKLSS*RNIRNQRLWRS Trigger: GCTCCTCCACAATCTCTGGTTTCTTATGTTTCTCCATGAGCTCAGCTTTTTCATCAACTCCAATGCTTCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609575.1 |
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