Pregenerated sensors for HNRNPC (Homo sapiens)
Ensembl gene IDs: ENSG00000092199Ensembl transcript IDs: ENST00000336053.10, ENST00000420743.6, ENST00000430246.6, ENST00000553300.6, ENST00000555127.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAACATCTGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTaGAGGGAGAGGCCCTACAGTGAAGGGAAAAGTAGACACTTGATT | + |
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Preference number: 1 (lower is better) Translates to: EHLQIVVFTAKQTAL*RERPYSEGKSRHLI Trigger: AATCAAGTGTCTACTTTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGATGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR TCA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTCAGTGCCGCATGCTATaGAACAATAGCAACTTTACA | + |
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Preference number: 2 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPQCRML*NNSNFT Trigger: TGTAAAGTTGCTATTGTTTCATAGCATGCGGCACTG...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR TCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAACAGTGCCGCATGCTATaGAACAATAGCAACTTTACA | + |
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Preference number: 2 (lower is better) Translates to: FTAKQTALCRERPYSEGKQCRML*NNSNFT Trigger: TGTAAAGTTGCTATTGTTTCATAGCATGCGGCACTG...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR TCA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTAAAGTCTGTGTAACATaGGCTCACATCAGATTAGAA | + |
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Preference number: 2 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPKVCVT*AHIRLE Trigger: TTCTAATCTGATGTGAGCTCATGTTACACAGACTTT...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR GCA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTCTCTTCATTCTTTTCTaGTTTTGTCACCTGTTACAG | + |
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Preference number: 2 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPLFILF*FCHLLQ Trigger: CTGTAACAGGTGACAAAAGCAGAAAAGAATGAAGAG...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR GCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAACTCTTCATTCTTTTCTaGTTTTGTCACCTGTTACAG | + |
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Preference number: 2 (lower is better) Translates to: FTAKQTALCRERPYSEGKLFILF*FCHLLQ Trigger: CTGTAACAGGTGACAAAAGCAGAAAAGAATGAAGAG...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR TCA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGGATCAACTCCAGCTGTaGGAAACAGACACAAACAGG | + |
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Preference number: 2 (lower is better) Translates to: HINTMPFYVRDLNICRLWDQLQL*ETDTNR Trigger: CCTGTTTGTGTCTGTTTCTCACAGCTGGAGTTGATC...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000336053.10 |
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| 3UTR-3UTR TCA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGAAAGTCTGTGTAACATaGGCTCACATCAGATTAGAA | + |
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Preference number: 2 (lower is better) Translates to: HINTMPFYVRDLNICRLWKVCVT*AHIRLE Trigger: TTCTAATCTGATGTGAGCTCATGTTACACAGACTTT...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR CCA 72 bp | CCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTaGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: PFYVRDLNICRL*CSQLNRLLCAG Trigger: CCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR-3UTR CAA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGGAAGTAAGAGTTTTCTaGTTTTCAGGAACATGGAGG | + |
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Preference number: 3 (lower is better) Translates to: HINTMPFYVRDLNICRLWEVRVF*FSGTWR Trigger: CCTCCATGTTCCTGAAAACAAGAAAACTCTTACTTC...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR GCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAACCCCCGAGTCTCCTCTaGCGCCGAGGCGAAGGCCTA | + |
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Preference number: 4 (lower is better) Translates to: FTAKQTALCRERPYSEGKPPSLL*RRGEGL Trigger: TAGGCCTTCGCCTCGGCGGCAGAGGAGACTCGGGGG...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336053.10 |
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| CDS-3UTR CCA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTCGTCTCTTCACAAAATaGCCCCCGAGTCTCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPRLFTK*PPSLLC Trigger: GCAGAGGAGACTCGGGGGCCATTTTGTGAAGAGACG...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336053.10 |
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| CDS-3UTR GCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAAAAACAGACTGCTCTGTaGAGGGAGAGGCCCTACAGT | + |
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Preference number: 4 (lower is better) Translates to: FTAKQTALCRERPYSEGKKQTAL*RERPYS Trigger: ACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTT...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR TCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAAGATCAACTCCAGCTGTaGGAAACAGACACAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: FTAKQTALCRERPYSEGKDQLQL*ETDTNR Trigger: CCTGTTTGTGTCTGTTTCTCACAGCTGGAGTTGATC...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000336053.10 |
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| CDS-3UTR CCA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTAACATCTGCAGATTGTaGTGTTCACAGCTAAACAGA | + |
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Preference number: 4 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPNICRL*CSQLNR Trigger: TCTGTTTAGCTGTGAACACCACAATCTGCAGATGTT...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR TCA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAAAAAGTCTGTGTAACATaGGCTCACATCAGATTAGAA | + |
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Preference number: 4 (lower is better) Translates to: FTAKQTALCRERPYSEGKKVCVT*AHIRLE Trigger: TTCTAATCTGATGTGAGCTCATGTTACACAGACTTT...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| 3UTR CAA 72 bp | ATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATaGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: MPFYVRDLNICR*WCSQLNRLLCA Trigger: TGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR GCA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGAAACAGACTGCTCTGTaGAGGGAGAGGCCCTACAGT | + |
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Preference number: 4 (lower is better) Translates to: HINTMPFYVRDLNICRLWKQTAL*RERPYS Trigger: ACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTT...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR CCA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGTTCTTTCCTTTCCCGTaGTTTTCACCTGGTCATCCC | + |
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Preference number: 4 (lower is better) Translates to: HINTMPFYVRDLNICRLWFFPFP*FSPGHP Trigger: GGGATGACCAGGTGAAAACCACGGGAAAGGAAAGAA...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000336053.10 |
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| CDS-3UTR CCA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGAACATCTGCAGATTGTaGTGTTCACAGCTAAACAGA | + |
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Preference number: 4 (lower is better) Translates to: HINTMPFYVRDLNICRLWNICRL*CSQLNR Trigger: TCTGTTTAGCTGTGAACACCACAATCTGCAGATGTT...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS CCA 90 bp | TGGCTGCTGCTGCTCCAGGCTGGGCATCCATGTTGCTGCAGCTTGTaGTTTGTGAGGGGTAGTGTACAGGAAAAGCAGGATGGGATTTCA | + |
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Preference number: 5 (lower is better) Translates to: WLLLLQAGHPCCCSL*FVRGSVQEKQDGIS Trigger: TGAAATCCCATCCTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCAGCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS TCA 90 bp | GGATGGGGTTCGCCTTGCTGCCCTGTGAAAGGAGAAGGGACAGATTaGGTCAGAGTTCCTCAGAAATGTTGTGCCCTAAACCCCCAAGAC | + |
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Preference number: 5 (lower is better) Translates to: GWGSPCCPVKGEGTD*VRVPQKCCALNPQD Trigger: GTCTTGGGGGTTTAGGGCACAACATTTCTGAGGAACTCTGACTCAATCTGTCCCTTCTCCTTTCACAGGGCAGCAAGGCGAACCCCATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000430246.6 |
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| CDS TCA 90 bp | TGCTGCTCCAGGCTGGGCATCCATGTTGCTGCAGCTTGTGGTTTGTaGGGGGTAGTGTACAGGAAAAGCAGGATGGGATTTCAAGGGAAA | + |
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Preference number: 5 (lower is better) Translates to: CCSRLGIHVAAACGL*GVVYRKSRMGFQGK Trigger: TTTCCCTTGAAATCCCATCCTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS-3UTR CAA 90 bp | TGCAGATTGTGGTGTTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTGAAGTAAGAGTTTTCTaGTTTTCAGGAACATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CRLWCSQLNRLLCAGRGPEVRVF*FSGTWR Trigger: CCTCCATGTTCCTGAAAACAAGAAAACTCTTACTTC...AGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAACACCACAATCTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS-3UTR CAA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAATTGAACATCTGCAGATaGTGGTGTTCACAGCTAAAC | + |
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Preference number: 5 (lower is better) Translates to: FTAKQTALCRERPYSEGKLNICR*WCSQLN Trigger: GTTTAGCTGTGAACACCACAATCTGCAGATGTTCAA...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS GCA 90 bp | GAAAGGAGAAGGGACAGATTGAGTCAGAGTTCCTCAGAAATGTTGTaGCCTAAACCCCCAAGACAGAAACATCTGTCTACTGCAGCTAAC | + |
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Preference number: 5 (lower is better) Translates to: ERRRDRLSQSSSEML*PKPPRQKHLSTAAN Trigger: GTTAGCTGCAGTAGACAGATGTTTCTGTCTTGGGGGTTTAGGGCACAACATTTCTGAGGAACTCTGACTCAATCTGTCCCTTCTCCTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000430246.6 |
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| CDS-3UTR CAA 90 bp | TTCACAGCTAAACAGACTGCTCTGTGCAGGGAGAGGCCCTACAGTGAAGGGAAAGAAGTAAGAGTTTTCTaGTTTTCAGGAACATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: FTAKQTALCRERPYSEGKEVRVF*FSGTWR Trigger: CCTCCATGTTCCTGAAAACAAGAAAACTCTTACTTC...TTTCCCTTCACTGTAGGGCCTCTCCCTGCACAGAGCAGTCTGTTTAGCTGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS GCA 90 bp | TCAAACCACTTAAAAATACTAATGCCTTCGCTTTCTCTCCCAAGATaGAAAACTCCAAAGTCAATCAGGAGGCCGGAGAAATTCTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: SNHLKILMPSLSLPR*KTPKSIRRPEKFLE Trigger: TTCTAAGAATTTCTCCGGCCTCCTGATTGACTTTGGAGTTTTGCATCTTGGGAGAGAAAGCGAAGGCATTAGTATTTTTAAGTGGTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000430246.6 ENST00000555127.1 |
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| CDS TCA 90 bp | GGAGTTTTTGCTATGAGTAATAGACTGAAGGTGAATGGCCTACCATaGAGATCTATACTAGAGATGACTCATCTATTCTCAAAACCAGTG | + |
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Preference number: 5 (lower is better) Translates to: GVFAMSNRLKVNGLP*RSILEMTHLFSKPV Trigger: CACTGGTTTTGAGAATAGATGAGTCATCTCTAGTATAGATCTTCATGGTAGGCCATTCACCTTCAGTCTATTACTCATAGCAAAAACTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000430246.6 |
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| CDS-3UTR CAA 90 bp | CATATAAATACTATGCCATTTTATGTAAGGGACTTGAACATCTGCAGATTGTGGTTGAACATCTGCAGATaGTGGTGTTCACAGCTAAAC | + |
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Preference number: 5 (lower is better) Translates to: HINTMPFYVRDLNICRLWLNICR*WCSQLN Trigger: GTTTAGCTGTGAACACCACAATCTGCAGATGTTCAA...CCACAATCTGCAGATGTTCAAGTCCCTTACATAAAATGGCATAGTATTTATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336053.10 ENST00000553300.6 |
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| CDS GCA 72 bp | TCCTGGCTGCTGCTGCTCCAGGCTGGGCATCCATGTTaGTGCAGCTTGTGGTTTGTGAGGGGTAGTGTACAG | + |
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Preference number: 6 (lower is better) Translates to: SWLLLLQAGHPC*CSLWFVRGSVQ Trigger: CTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCAGCAGCCAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS GCA 72 bp | TGGCTGCTGCTGCTCCAGGCTGGGCATCCATGTTGCTaGAGCTTGTGGTTTGTGAGGGGTAGTGTACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: WLLLLQAGHPCC*SLWFVRGSVQE Trigger: TTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCAGCAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS CAA 90 bp | TCCTGGCTGCTGCTGCTCCAGGCTGGGCATCCATGTTGCTGCAGCTaGTGGTTTGTGAGGGGTAGTGTACAGGAAAAGCAGGATGGGATT | + |
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Preference number: 6 (lower is better) Translates to: SWLLLLQAGHPCCCS*WFVRGSVQEKQDGI Trigger: AATCCCATCCTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCAGCAGCCAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS CAA 72 bp | CTGCTGCTCCAGGCTGGGCATCCATGTTGCTGCAGCTaGTGGTTTGTGAGGGGTAGTGTACAGGAAAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLLQAGHPCCCS*WFVRGSVQEKQ Trigger: CTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS CCA 72 bp | CTGCTCCAGGCTGGGCATCCATGTTGCTGCAGCTTGTaGTTTGTGAGGGGTAGTGTACAGGAAAAGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LLQAGHPCCCSL*FVRGSVQEKQD Trigger: ATCCTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCTGGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS CAA 90 bp | GGGATGGGGTTCGCCTTGCTGCCCTGTGAAAGGAGAAGGGACAGATaGAGTCAGAGTTCCTCAGAAATGTTGTGCCCTAAACCCCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: GMGFALLPCERRRDR*SQSSSEMLCPKPPR Trigger: TCTTGGGGGTTTAGGGCACAACATTTCTGAGGAACTCTGACTCAATCTGTCCCTTCTCCTTTCACAGGGCAGCAAGGCGAACCCCATCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000430246.6 |
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| CDS TCA 72 bp | AGGCTGGGCATCCATGTTGCTGCAGCTTGTGGTTTGTaGGGGGTAGTGTACAGGAAAAGCAGGATGGGATTT | + |
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Preference number: 6 (lower is better) Translates to: RLGIHVAAACGL*GVVYRKSRMGF Trigger: AAATCCCATCCTGCTTTTCCTGTACACTACCCCTCACAAACCACAAGCTGCAGCAACATGGATGCCCAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420743.6 ENST00000430246.6 |
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| CDS TCA 72 bp | GCTATGAGTAATAGACTGAAGGTGAATGGCCTACCATaGAGATCTATACTAGAGATGACTCATCTATTCTCA | + |
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Preference number: 6 (lower is better) Translates to: AMSNRLKVNGLP*RSILEMTHLFS Trigger: TGAGAATAGATGAGTCATCTCTAGTATAGATCTTCATGGTAGGCCATTCACCTTCAGTCTATTACTCATAGC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430246.6 |
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