Pregenerated sensors for HNRNPAB (Homo sapiens)
Ensembl gene IDs: ENSG00000197451Ensembl transcript IDs: ENST00000355836.9, ENST00000358344.8, ENST00000504796.1, ENST00000504898.5, ENST00000506259.5, ENST00000506339.5, ENST00000514633.5, ENST00000515193.5
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCCTCGCCCGCTTCCGACATGCTAGGCCGAGGCGCGGCGGCTCCTaGAACCAGCGGCGACAGCGCGTCAGGCCGGCGCGGCTCCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: LLARFRHARPRRGGS*NQRRQRVRPARLPP Trigger: TGGCGGGAGCCGCGCCGGCCTGACGCGCTGTCGCCGCTGGTTGCAGGAGCCGCCGCGCCTCGGCCTAGCATGTCGGAAGCGGGCGAGGAG 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000504898.5 ENST00000506259.5 |
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| CDS CCA 90 bp | CGGCCGGCGACTCGCCTTCGGGGACGGCCTCATGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGGGCTGCTCCTCGCCCGCTTCCGACA | + |
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Preference number: 5 (lower is better) Translates to: RPATRLRGRPHVRSR*RPSSPWAAPRPLPT Trigger: TGTCGGAAGCGGGCGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACATGAGGCCGTCCCCGAAGGCGAGTCGCCGGCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000355836.9 ENST00000358344.8 ENST00000504898.5 ENST00000506259.5 ENST00000506339.5 ENST00000514633.5 ENST00000515193.5 |
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| CDS GCA 90 bp | CAGGCCCGTAGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCACCTCCGCTGC | + |
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Preference number: 5 (lower is better) Translates to: QARSPAGSRSPGSSS*RSPDSNSDSDHLRC Trigger: GCAGCGGAGGTGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCTACGGGCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506339.5 |
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| CDS GCA 90 bp | CAGGCCCGTAGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCTCCACCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: QARSPAGSRSPGSSS*RSPDSNSDSDLHLH Trigger: GTGGAGGTGGAGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCTACGGGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000358344.8 ENST00000504898.5 |
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| CDS TCA 90 bp | AATGGTAGGGTGAGACACACGGCAACAAGTCTTGTAAGCAAGCTGTaGTTTTGGAAAGGACTGGCCCTGGCAAAGTTCTCACGAAGTCTA | + |
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Preference number: 5 (lower is better) Translates to: NGRVRHTATSLVSKL*FWKGLALAKFSRSL Trigger: TAGACTTCGTGAGAACTTTGCCAGGGCCAGTCCTTTCCAAAATCACAGCTTGCTTACAAGACTTGTTGCCGTGTGTCTCACCCTACCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504796.1 |
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| CDS CCA 72 bp | ACTCGCCTTCGGGGACGGCCTCATGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGGGCTGCTCCTCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: TRLRGRPHVRSR*RPSSPWAAPRP Trigger: CGGGCGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACATGAGGCCGTCCCCGAAGGCGAGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000355836.9 ENST00000358344.8 ENST00000504898.5 ENST00000506259.5 ENST00000506339.5 ENST00000514633.5 ENST00000515193.5 |
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| CDS GCA 72 bp | AGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: SPAGSRSPGSSS*RSPDSNSDSDL Trigger: GAGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000358344.8 ENST00000504898.5 |
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| CDS GCA 72 bp | AGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCAC | + |
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Preference number: 6 (lower is better) Translates to: SPAGSRSPGSSS*RSPDSNSDSDH Trigger: GTGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506339.5 |
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| CDS TCA 72 bp | GTGAGACACACGGCAACAAGTCTTGTAAGCAAGCTGTaGTTTTGGAAAGGACTGGCCCTGGCAAAGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: VRHTATSLVSKL*FWKGLALAKFS Trigger: TGAGAACTTTGCCAGGGCCAGTCCTTTCCAAAATCACAGCTTGCTTACAAGACTTGTTGCCGTGTGTCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504796.1 |
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