Pregenerated sensors for HNRNPA3 (Homo sapiens)
Ensembl gene IDs: ENSG00000170144Ensembl transcript IDs: ENST00000392524.6, ENST00000411529.6, ENST00000676488.1, ENST00000676629.1, ENST00000676681.1, ENST00000676736.1, ENST00000676874.1, ENST00000677043.1, ENST00000677337.1, ENST00000677863.1, ENST00000678111.1, ENST00000679159.1, ENST00000679328.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGTCTGTTGTGTGTCATaGTTACACACCAAAACGGTT | + |
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Preference number: 2 (lower is better) Translates to: PRLVSNSWTWDPSASASQVCCVS*LHTKTV Trigger: AACCGTTTTGGTGTGTAAGCATGACACACAACAGAC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| 3UTR-3UTR GCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAACATCATAGTATCTTATaGCTTCACTTCTCTGTAGTT | + |
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Preference number: 2 (lower is better) Translates to: PRLVSNSWTWDPSASASQHHSIL*LHFSVV Trigger: AACTACAGAGAAGTGAAGGCATAAGATACTATGATG...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| 3UTR TCA 72 bp | CAGTGGGGCAGTCAGCTCACTGCAGCCTCGACTGCCTaGTATCAAGGCAGCCTCCCAAATAGCTGGGACTAC | + |
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Preference number: 3 (lower is better) Translates to: QWGSQLTAASTA*YQGSLPNSWDY Trigger: GTAGTCCCAGCTATTTGGGAGGCTGCCTTGATATCAGGCAGTCGAGGCTGCAGTGAGCTGACTGCCCCACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| 3UTR-3UTR CAA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAAGGATACTGTCAAGGTaGTGTCAAACAATTTCACAA | + |
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Preference number: 3 (lower is better) Translates to: PRLVSNSWTWDPSASASQRILSR*CQTISQ Trigger: TTGTGAAATTGTTTGACACAACCTTGACAGTATCCT...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR TCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGCAGCCTCGACTGCCTaGTATCAAGGCAGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQAASTA*YQGSLP Trigger: TGGGAGGCTGCCTTGATATCAGGCAGTCGAGGCTGC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGGGCAGTCAGCTCACTaGAGCCTCGACTGCCTGATA | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQGQSAH*SLDCLI Trigger: TATCAGGCAGTCGAGGCTGCAGTGAGCTGACTGCCC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGACTTGGGATCCATCTaGCTCAGCCTCCCAAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQDLGSI*LSLPKC Trigger: GCACTTTGGGAGGCTGAGGCAGATGGATCCCAAGTC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR CCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAATCAAATTCCTGGACTTaGGATCCATCTGCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQSNSWT*DPSASA Trigger: GGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGA...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR CCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAACTCGTCTCAAATTCCTaGACTTGGGATCCATCTGCC | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQLVSNS*TWDPSA Trigger: GGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAG...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR TCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGTAACTTTTCTTCTTTaGGATGGGGTCACCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQVTFLL*DGVTQA Trigger: AGCCTGGGTGACCCCATCTCAAAGAAGAAAAGTTAC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAAGGCTCTCACTATGTTaGCCAGGCTCGTCTCAAATT | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQRLSLC*PGSSQI Trigger: AATTTGAGACGAGCCTGGGCAACATAGTGAGAGCCT...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR TCA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAACCAACCTTTACCCATaGCATCTGGTAACTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: PRLVSNSWTWDPSASASQTNLYP*HLVTFL Trigger: AAGAAAAGTTACCAGATGTCATGGGTAAAGGTTGGT...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR TCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTGCAGCCTCGACTGCCTaGTATCAAGGCAGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVAASTA*YQGSLP Trigger: TGGGAGGCTGCCTTGATATCAGGCAGTCGAGGCTGC...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTGGGCAGTCAGCTCACTaGAGCCTCGACTGCCTGATA | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVGQSAH*SLDCLI Trigger: TATCAGGCAGTCGAGGCTGCAGTGAGCTGACTGCCC...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR CCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTCAGGCTGGAATACAGTaGGGCAGTCAGCTCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVQAGIQ*GSQLTA Trigger: TGCAGTGAGCTGACTGCCCCACTGTATTCCAGCCTG...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR CCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTTCAAATTCCTGGACTTaGGATCCATCTGCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVSNSWT*DPSASA Trigger: GGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGA...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR CCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTCTCGTCTCAAATTCCTaGACTTGGGATCCATCTGCC | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVLVSNS*TWDPSA Trigger: GGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAG...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR TCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTGTAACTTTTCTTCTTTaGGATGGGGTCACCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVVTFLL*DGVTQA Trigger: AGCCTGGGTGACCCCATCTCAAAGAAGAAAAGTTAC...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTAGGCTCTCACTATGTTaGCCAGGCTCGTCTCAAATT | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVRLSLC*PGSSQI Trigger: AATTTGAGACGAGCCTGGGCAACATAGTGAGAGCCT...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTGTCTGTTGTGTGTCATaGTTACACACCAAAACGGTT | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVVCCVS*LHTKTV Trigger: AACCGTTTTGGTGTGTAAGCATGACACACAACAGAC...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR GCA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTCATCATAGTATCTTATaGCTTCACTTCTCTGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: KLVNSTINLMPLKDTVKVHHSIL*LHFSVV Trigger: AACTACAGAGAAGTGAAGGCATAAGATACTATGATG...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS CCA 90 bp | AGCGAATTGGGAAGGGGGCGGAGCCAAGCGGGCGCGAAGAGGGACTaGACCAGCGGGTTGGCGGGCGGAGGGCGGAGGCGCGGCGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: SELGRGRSQAGAKRD*TSGLAGGGRRRGVP Trigger: CGGCACGCCGCGCCTCCGCCCTCCGCCCGCCAACCCGCTGGTCCAGTCCCTCTTCGCGCCCGCTTGGCTCCGCCCCCTTCCCAATTCGCT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000392524.6 |
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| CDS GCA 90 bp | AATCCCAGGCTCGCTTTCCCGGCGGCAGAGCGAGGCGGCGGCCATTaGGGGCCAATGCGCCATTTCGTAACGCGGCGGCGGATCAATGTC | + |
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Preference number: 5 (lower is better) Translates to: NPRLAFPAAERGGGH*GPMRHFVTRRRINV Trigger: GACATTGATCCGCCGCCGCGTTACGAAATGGCGCATTGGCCCGCAATGGCCGCCGCCTCGCTCTGCCGCCGGGAAAGCGAGCCTGGGATT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000679328.1 |
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| CDS GCA 90 bp | GGATCATGGCCCTCCCCATGCTTCGAGGCCATTTGCGGCTTTTTCTaGCGGGCCGCCTCCGCCCTCTTCCCTCCAATCCCAGGCTCGCTT | + |
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Preference number: 5 (lower is better) Translates to: GSWPSPCFEAICGFF*RAASALFPPIPGSL Trigger: AAGCGAGCCTGGGATTGGAGGGAAGAGGGCGGAGGCGGCCCGGCAGAAAAAGCCGCAAATGGCCTCGAAGCATGGGGAGGGCCATGATCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000679328.1 |
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| CDS-3UTR CAA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAACAGGCTCTCACTATGTaGCCCAGGCTCGTCTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: PRLVSNSWTWDPSASASQQALTM*PRLVSN Trigger: ATTTGAGACGAGCCTGGGCAACATAGTGAGAGCCTG...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR CAA 90 bp | CCCAGGCTCGTCTCAAATTCCTGGACTTGGGATCCATCTGCCTCAGCCTCCCAAGGTAACTTTTCTTCTTaGAGATGGGGTCACCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: PRLVSNSWTWDPSASASQGNFSS*RWGHPG Trigger: GCCTGGGTGACCCCATCTCAAAGAAGAAAAGTTACC...TTGGGAGGCTGAGGCAGATGGATCCCAAGTCCAGGAATTTGAGACGAGCCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000676874.1 ENST00000677043.1 ENST00000677337.1 ENST00000677863.1 ENST00000678111.1 ENST00000679159.1 |
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| CDS-3UTR CAA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTCAGGCTCTCACTATGTaGCCCAGGCTCGTCTCAAAT | + |
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Preference number: 5 (lower is better) Translates to: KLVNSTINLMPLKDTVKVQALTM*PRLVSN Trigger: ATTTGAGACGAGCCTGGGCAACATAGTGAGAGCCTG...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS-3UTR CAA 90 bp | AAGTTGGTTAACAGTACAATTAACCTCATGCCATTAAAGGATACTGTCAAGGTTAGGATACTGTCAAGGTaGTGTCAAACAATTTCACAA | + |
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Preference number: 5 (lower is better) Translates to: KLVNSTINLMPLKDTVKVRILSR*CQTISQ Trigger: TTGTGAAATTGTTTGACACAACCTTGACAGTATCCT...AACCTTGACAGTATCCTTTAATGGCATGAGGTTAATTGTACTGTTAACCAACTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411529.6 ENST00000676488.1 ENST00000676629.1 ENST00000676681.1 ENST00000676736.1 ENST00000677337.1 ENST00000677863.1 ENST00000679159.1 |
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| CDS CCA 72 bp | GGAAGGGGGCGGAGCCAAGCGGGCGCGAAGAGGGACTaGACCAGCGGGTTGGCGGGCGGAGGGCGGAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: GRGRSQAGAKRD*TSGLAGGGRRR Trigger: GCGCCTCCGCCCTCCGCCCGCCAACCCGCTGGTCCAGTCCCTCTTCGCGCCCGCTTGGCTCCGCCCCCTTCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000392524.6 |
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| CDS CAA 90 bp | CAATCCCAGGCTCGCTTTCCCGGCGGCAGAGCGAGGCGGCGGCCATaGCGGGCCAATGCGCCATTTCGTAACGCGGCGGCGGATCAATGT | + |
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Preference number: 6 (lower is better) Translates to: QSQARFPGGRARRRP*RANAPFRNAAADQC Trigger: ACATTGATCCGCCGCCGCGTTACGAAATGGCGCATTGGCCCGCAATGGCCGCCGCCTCGCTCTGCCGCCGGGAAAGCGAGCCTGGGATTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000679328.1 |
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| CDS GCA 72 bp | CCCTCCCCATGCTTCGAGGCCATTTGCGGCTTTTTCTaGCGGGCCGCCTCCGCCCTCTTCCCTCCAATCCCA | + |
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Preference number: 6 (lower is better) Translates to: PSPCFEAICGFF*RAASALFPPIP Trigger: TGGGATTGGAGGGAAGAGGGCGGAGGCGGCCCGGCAGAAAAAGCCGCAAATGGCCTCGAAGCATGGGGAGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000679328.1 |
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| CDS CAA 72 bp | CTTTGGATCATGGCCCTCCCCATGCTTCGAGGCCATTaGCGGCTTTTTCTGCCGGGCCGCCTCCGCCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LWIMALPMLRGH*RLFLPGRLRPL Trigger: AAGAGGGCGGAGGCGGCCCGGCAGAAAAAGCCGCAAATGGCCTCGAAGCATGGGGAGGGCCATGATCCAAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000679328.1 |
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