Pregenerated sensors for HMGN4 (Homo sapiens)
Ensembl gene IDs: ENSG00000182952Ensembl transcript IDs: ENST00000377575.3, ENST00000477243.1
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACGAAGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTaGCTGACACGTGAATGTCAGAGAATCTCTCCTGGGAATCAAGGG | + |
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Preference number: 1 (lower is better) Translates to: TRSFGSPHCKASVPK*LTRECQRISPGNQG Trigger: CCCTTGATTCCCAGGAGAGATTCTCTGACATTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACTTCGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR TCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACCACATGAGGCATGTATaGGCTTTTCTCAGGCCCACT | + |
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Preference number: 2 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDHMRHV*AFLRPT Trigger: AGTGGGCCTGAGAAAAGCTCATACATGCCTCATGTG...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR TCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCAAGTCAAGTCTATGCTaGTGGCATCGGGGAAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: KCGGILVFIRPFPKVAIIKSSLC*WHRGKG Trigger: CCCCTTTCCCCGATGCCATCAGCATAGACTTGACTT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCGCTTCCGTGCCAAAGTaGCTGACACGTGAATGTCAG | + |
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Preference number: 2 (lower is better) Translates to: KCGGILVFIRPFPKVAIIASVPK*LTRECQ Trigger: CTGACATTCACGTGTCAGCCACTTTGGCACGGAAGC...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR TCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACGATGAATCCACAAACTaGAAACAGGAATCTTGGCTC | + |
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Preference number: 2 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDDESTN*KQESWL Trigger: GAGCCAAGATTCCTGTTTTCAGTTTGTGGATTCATC...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CCA 90 bp | GACAGAGGTGAAATTGGTTACAATTATGACAAAATGTGGAGGCATCTTGGTTTTGATTTTCAGAGAGGGTaGACACTTCACATGAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: DRGEIGYNYDKMWRHLGFDFQRG*TLHMRH Trigger: ATGCCTCATGTGAAGTGTCCACCCTCTCTGAAAATC...AAAACCAAGATGCCTCCACATTTTGTCATAATTGTAACCAATTTCACCTCTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR TCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATACTTGGCTCTTTTAAGTaGCACCATCTCGATGTCATC | + |
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Preference number: 2 (lower is better) Translates to: LDKLMSVRIETIKRPTHILGSFK*HHLDVI Trigger: GATGACATCGAGATGGTGTCACTTAAAAGAGCCAAG...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR TCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACGTAAAACCAGCAGGATaGATCCACAAACTGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDVKPAG*IHKLKT Trigger: TGTTTTCAGTTTGTGGATTCATCCTGCTGGTTTTAC...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATATCAGAGAATCTCTCCTaGGAATCAAGGGAATCAAGA | + |
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Preference number: 2 (lower is better) Translates to: LDKLMSVRIETIKRPTHISENLS*ESRESR Trigger: TCTTGATTCCCTTGATTCCCAGGAGAGATTCTCTGA...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR GCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCCCTATTAGTGGTACTTaGCCTTTCCACAAAAGACAA | + |
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Preference number: 2 (lower is better) Translates to: KCGGILVFIRPFPKVAIIPISGT*PFHKRQ Trigger: TTGTCTTTTGTGGAAAGGGCAAGTACCACTAATAGG...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCAGTGTTACAAATCACTaGGGAAAGGATGAACTTTTC | + |
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Preference number: 2 (lower is better) Translates to: KCGGILVFIRPFPKVAIISVTNH*GKDELF Trigger: GAAAAGTTCATCCTTTCCCCAGTGATTTGTAACACT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR CCA 72 bp | TTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTaGCTGACACGTGAATGTCAGAGAATCTCTCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: FGSPHCKASVPK*LTRECQRISPG Trigger: CCCAGGAGAGATTCTCTGACATTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CAA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCGGGAGACACGAAGTTTaGGTTCCCCACACTGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: ATRLDKLMSVRIETIKRPGRHEV*VPHTVR Trigger: CCTTACAGTGTGGGGAACCAAAACTTCGTGTCTCCC...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CAA 90 bp | GACAGAGGTGAAATTGGTTACAATTATGACAAAATGTGGAGGCATCTTGGTTTTCAGCTGATTTTAGGGTaGCCAAGGCCACATCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: DRGEIGYNYDKMWRHLGFQLILG*PRPHQN Trigger: GTTTTGATGTGGCCTTGGCAACCCTAAAATCAGCTG...AAAACCAAGATGCCTCCACATTTTGTCATAATTGTAACCAATTTCACCTCTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR-3UTR CAA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACCTGAAAACAGGAATCTaGGCTCTTTTAAGTGACACC | + |
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Preference number: 3 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDLKTGI*ALLSDT Trigger: GGTGTCACTTAAAAGAGCCAAGATTCCTGTTTTCAG...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR GCA 72 bp | TTTCCTAAAGTTGCAATAATCAGGACTGTACTGTACTaGTACAAGATTAGACAAATTGATGTCAGTCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: FPKVAIIRTVLY*YKIRQIDVSQN Trigger: ATTCTGACTGACATCAATTTGTCTAATCTTGTAGCAGTACAGTACAGTCCTGATTATTGCAACTTTAGGAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | GACAGAGGTGAAATTGGTTACAATTATGACAAAATGTGGAGGCATCTTGGTTTTGATGTCCGAGTCTCGTaGCCGTCCGAGGGGCGCGGG | + |
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Preference number: 4 (lower is better) Translates to: DRGEIGYNYDKMWRHLGFDVRVS*PSEGRG Trigger: CCCGCGCCCCTCGGACGGCCACGAGACTCGGACATC...AAAACCAAGATGCCTCCACATTTTGTCATAATTGTAACCAATTTCACCTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAAAAAGTGGCTGACACGTaGATGTCAGAGAATCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SFGSPHCKASVPKWLTREKVADT*MSENLS Trigger: GGAGAGATTCTCTGACATTCACGTGTCAGCCACTTT...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAAGATTTTCAGAGAGGGTaGACACTTCACATGAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SFGSPHCKASVPKWLTREDFQRG*TLHMRH Trigger: ATGCCTCATGTGAAGTGTCCACCCTCTCTGAAAATC...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR GCA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAACCTATTAGTGGTACTTaGCCTTTCCACAAAAGACAA | + |
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Preference number: 4 (lower is better) Translates to: SFGSPHCKASVPKWLTREPISGT*PFHKRQ Trigger: TTGTCTTTTGTGGAAAGGGCAAGTACCACTAATAGG...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACAGCAGTGTTCGCAGGTaGCTTGAGCAGTCCTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDSSVRR*LEQSCW Trigger: CCAACAGGACTGCTCAAGCCACCTGCGAACACTGCT...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAAAGTGTTACAAATCACTaGGGAAAGGATGAACTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SFGSPHCKASVPKWLTRESVTNH*GKDELF Trigger: GAAAAGTTCATCCTTTCCCCAGTGATTTGTAACACT...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATATGTTCGCAGGTGGCTTaGGCAGTCCTGTTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LDKLMSVRIETIKRPTHICSQVA*AVLLGA Trigger: AGCACCCAACAGGACTGCTCAAGCCACCTGCGAACA...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACCCGTGCCAAAGTGGCTaGCACGTGAATGTCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDPCQSG*HVNVRE Trigger: TTCTCTGACATTCACGTGTCAGCCACTTTGGCACGG...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR GCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCAGCAGTCCTGTTGGGTaGTTCTGTCCTCCTCACGCT | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPSSPVG*FCPPHA Trigger: AGCGTGAGGAGGACAGAAGCACCCAACAGGACTGCT...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR GCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACTTGGCATCCCCAGTaGCTTCCGCTTTCTGGGACT | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPTWHPQ*LPLSGT Trigger: AGTCCCAGAAAGCGGAAGGCACTGGGGATGCCAAGT...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCTCCGCTTTCTGGGACTaGAGTGTAGAGGCATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPSAFWD*SVEASR Trigger: CCGAGATGCCTCTACACTCCAGTCCCAGAAAGCGGA...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCAGCAGACAACCGAGCTaGTCTCCTCTGTGGCTCATC | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIISRQPS*SPLWLI Trigger: GATGAGCCACAGAGGAGATCAGCTCGGTTGTCTGCT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATAGTGCCTTCCGCTTTCTaGGACTGGAGTGTAGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LDKLMSVRIETIKRPTHIVPSAF*DWSVEA Trigger: TGCCTCTACACTCCAGTCCCAGAAAGCGGAAGGCAC...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCGCTTCCGTGCCAAAGTaGCTGACACGTGAATGTCAG | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPASVPK*LTRECQ Trigger: CTGACATTCACGTGTCAGCCACTTTGGCACGGAAGC...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATATCCTCACGCTGTTCCTaGAAAGATGTCCGAGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: LDKLMSVRIETIKRPTHISSRCS*KDVRVS Trigger: CGAGACTCGGACATCTTTCCAGGAACAGCGTGAGGA...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCTTCTCAGGCCCACTTTaGCATGGAGGGACTAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPFSGPL*HGGTKV Trigger: TACTTTAGTCCCTCCATGTCAAAGTGGGCCTGAGAA...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCCACATGAGGCATGTATaGGCTTTTCTCAGGCCCACT | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIIHMRHV*AFLRPT Trigger: AGTGGGCCTGAGAAAAGCTCATACATGCCTCATGTG...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | GACAGAGGTGAAATTGGTTACAATTATGACAAAATGTGGAGGCATCTTGGTTTTGGTGGACACTTCACATaGGGCATGTATGAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: DRGEIGYNYDKMWRHLGFGGHFT*GMYELF Trigger: GAAAAGCTCATACATGCCTCATGTGAAGTGTCCACC...AAAACCAAGATGCCTCCACATTTTGTCATAATTGTAACCAATTTCACCTCTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCCTTGGCTCTTTTAAGTaGCACCATCTCGATGTCATC | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPLGSFK*HHLDVI Trigger: GATGACATCGAGATGGTGTCACTTAAAAGAGCCAAG...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| 3UTR CAA 72 bp | TGTTGGTCTAATTCTAGAAGTAATATGGAGGAACAGTaGGCTAAGAATAGCCAAGACACTCCAAGGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: CWSNSRSNMEEQ*AKNSQDTPRKN Trigger: GTTCTTCCTTGGAGTGTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCAACA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACCATCAACAGAAAGCCTaGGTTTTGTTACCTAACACA | + |
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Preference number: 4 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDHQQKA*VLLPNT Trigger: TGTGTTAGGTAACAAAACTCAGGCTTTCTGTTGATG...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCTCAGAGAATCTCTCCTaGGAATCAAGGGAATCAAGA | + |
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Preference number: 4 (lower is better) Translates to: ATRLDKLMSVRIETIKRPSENLS*ESRESR Trigger: TCTTGATTCCCTTGATTCCCAGGAGAGATTCTCTGA...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCGATGAATCCACAAACTaGAAACAGGAATCTTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIIDESTN*KQESWL Trigger: GAGCCAAGATTCCTGTTTTCAGTTTGTGGATTCATC...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACAATGTGGAGGCATCTTaGTTTTTATCAGACCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDNVEAS*FLSDLF Trigger: GAAAAGGTCTGATAAAAACCAAGATGCCTCCACATT...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATAGTAAAACCAGCAGGATaGATCCACAAACTGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: LDKLMSVRIETIKRPTHIVKPAG*IHKLKT Trigger: TGTTTTCAGTTTGTGGATTCATCCTGCTGGTTTTAC...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCATATGGAGGAACAGTTaGCTAAGAATAGCCAAGACA | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIIIWRNS*LRIAKT Trigger: TGTCTTGGCTATTCTTAGCCAACTGTTCCTCCATAT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR TCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCAAAGGCCTAAGTAAATaGAGAGCTGTACCATATTCA | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIIKGLSK*RAVPYS Trigger: TGAATATGGTACAGCTCTTCATTTACTTAGGCCTTT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CCA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCATTCTAGAAGTAATATaGAGGAACAGTTGGCTAAGA | + |
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Preference number: 4 (lower is better) Translates to: KCGGILVFIRPFPKVAIIILEVI*RNSWLR Trigger: TCTTAGCCAACTGTTCCTCCATATTACTTCTAGAAT...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS CCA 90 bp | GGGCATGGTAGCAGCAGTGTTCGCAGGTGGCTTGAGCAGTCCTGTTaGGTGCTTCTGTCCTCCTCACGCTGTTCCTGGAAAGATGTCCGA | + |
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Preference number: 5 (lower is better) Translates to: GHGSSSVRRWLEQSC*VLLSSSRCSWKDVR Trigger: TCGGACATCTTTCCAGGAACAGCGTGAGGAGGACAGAAGCACCCAACAGGACTGCTCAAGCCACCTGCGAACACTGCTGCTACCATGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS GCA 90 bp | ATGGTAGCAGCAGTGTTCGCAGGTGGCTTGAGCAGTCCTGTTGGGTaGTTCTGTCCTCCTCACGCTGTTCCTGGAAAGATGTCCGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: MVAAVFAGGLSSPVG*FCPPHAVPGKMSES Trigger: AGACTCGGACATCTTTCCAGGAACAGCGTGAGGAGGACAGAAGCACCCAACAGGACTGCTCAAGCCACCTGCGAACACTGCTGCTACCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAAGTGTTCGCAGGTGGCTaGAGCAGTCCTGTTGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: SFGSPHCKASVPKWLTREVFAGG*SSPVGC Trigger: GCACCCAACAGGACTGCTCAAGCCACCTGCGAACAC...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | AGTTTTGGTTCCCCACACTGTAAGGCTTCCGTGCCAAAGTGGCTGACACGTGAACAGCTGATTTTAGGGTaGCCAAGGCCACATCAAAAC | + |
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Preference number: 5 (lower is better) Translates to: SFGSPHCKASVPKWLTREQLILG*PRPHQN Trigger: GTTTTGATGTGGCCTTGGCAACCCTAAAATCAGCTG...TTCACGTGTCAGCCACTTTGGCACGGAAGCCTTACAGTGTGGGGAACCAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | TGGTCTAATTCTAGAAGTAATATGGAGGAACAGTTGGCTAAGAATAGCCAAGACCCTTTTGCCTTTCTCTaGGGCATGGTAGCAGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: WSNSRSNMEEQLAKNSQDPFAFL*GMVAAV Trigger: CACTGCTGCTACCATGCCCAAGAGAAAGGCAAAAGG...GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATTACTTCTAGAATTAGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATAGGGAGACACGAAGTTTaGGTTCCCCACACTGTAAGG | + |
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Preference number: 5 (lower is better) Translates to: LDKLMSVRIETIKRPTHIGRHEV*VPHTVR Trigger: CCTTACAGTGTGGGGAACCAAAACTTCGTGTCTCCC...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | TTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCACACACATAAGGCATCTCGGTTTTTaGCAGGGTTGTTCCCATCCT | + |
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Preference number: 5 (lower is better) Translates to: LDKLMSVRIETIKRPTHIRHLGF*QGCSHP Trigger: AGGATGGGAACAACCCTGCAAAAAACCGAGATGCCT...TATGTGTGTGGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | GCTACAAGATTAGACAAATTGATGTCAGTCAGAATAGAAACCATCAAAAGACCCAATATGGAGGAACAGTaGGCTAAGAATAGCCAAGAC | + |
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Preference number: 5 (lower is better) Translates to: ATRLDKLMSVRIETIKRPNMEEQ*AKNSQD Trigger: GTCTTGGCTATTCTTAGCCAACTGTTCCTCCATATT...GGGTCTTTTGATGGTTTCTATTCTGACTGACATCAATTTGTCTAATCTTGTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS-3UTR CAA 90 bp | AAATGTGGAGGCATCTTGGTTTTTATCAGACCTTTTCCTAAAGTTGCAATAATCCTGAAAACAGGAATCTaGGCTCTTTTAAGTGACACC | + |
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Preference number: 5 (lower is better) Translates to: KCGGILVFIRPFPKVAIILKTGI*ALLSDT Trigger: GGTGTCACTTAAAAGAGCCAAGATTCCTGTTTTCAG...GATTATTGCAACTTTAGGAAAAGGTCTGATAAAAACCAAGATGCCTCCACATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS GCA 72 bp | GCAGTGTTCGCAGGTGGCTTGAGCAGTCCTGTTGGGTaGTTCTGTCCTCCTCACGCTGTTCCTGGAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: AVFAGGLSSPVG*FCPPHAVPGKM Trigger: CATCTTTCCAGGAACAGCGTGAGGAGGACAGAAGCACCCAACAGGACTGCTCAAGCCACCTGCGAACACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS CCA 72 bp | CTTTCTCTTGGGCATGGTAGCAGCAGTGTTCGCAGGTaGCTTGAGCAGTCCTGTTGGGTGCTTCTGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LSLGHGSSSVRR*LEQSCWVLLSS Trigger: GGAGGACAGAAGCACCCAACAGGACTGCTCAAGCCACCTGCGAACACTGCTGCTACCATGCCCAAGAGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000377575.3 |
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| CDS CAA 72 bp | TGGAACCTTTGCCCCCTTTCTGGGCACCATAATAACTaGCTTATATTTCCGAGTCTCGTGGCCGTCCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: WNLCPLSGHHNN*LIFPSLVAVRG Trigger: CCCTCGGACGGCCACGAGACTCGGAAATATAAGCAAGTTATTATGGTGCCCAGAAAGGGGGCAAAGGTTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000477243.1 |
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