Pregenerated sensors for HMGN3 (Homo sapiens)

Ensembl gene IDs: ENSG00000118418

Ensembl transcript IDs: ENST00000275036.11, ENST00000344726.9, ENST00000620514.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGGACTGGAACTGCTGGCGCCGCCGCTGGATGCTGCCTCTGCCTCTaGAGCTGCTCACGCGCAGGGCACGACGTAGCCCGGCCTCTTCGA	+
Preference number: 5 (lower is better) Translates to: RTGTAGAAAGCCLCL*SCSRAGHDVARPLR Trigger: TCGAAGAGGCCGGGCTACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGTCCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS GCA 90 bp	GGAACTGCTGGCGCCGCCGCTGGATGCTGCCTCTGCCTCTGCAGCTaGTCACGCGCAGGGCACGACGTAGCCCGGCCTCTTCGACCTGCA	+
Preference number: 5 (lower is better) Translates to: GTAGAAAGCCLCLCS*SRAGHDVARPLRPA Trigger: TGCAGGTCGAAGAGGCCGGGCTACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620514.1
CDS GCA 90 bp	AAGCAACGGACTGGAACTGCTGGCGCCGCCGCTGGATGCTGCCTCTaGCTCTGCAGCTGCTCACGCGCAGGGCACGACGTAGCCCGGCCT	+
Preference number: 5 (lower is better) Translates to: KQRTGTAGAAAGCCL*LCSCSRAGHDVARP Trigger: AGGCCGGGCTACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGTCCGTTGCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS GCA 72 bp	GGCGCCGCCGCTGGATGCTGCCTCTGCCTCTGCAGCTaGTCACGCGCAGGGCACGACGTAGCCCGGCCTCTT	+
Preference number: 6 (lower is better) Translates to: GAAAGCCLCLCS*SRAGHDVARPL Trigger: AAGAGGCCGGGCTACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS GCA 72 bp	ACTGCTGGCGCCGCCGCTGGATGCTGCCTCTGCCTCTaGAGCTGCTCACGCGCAGGGCACGACGTAGCCCGG	+
Preference number: 6 (lower is better) Translates to: TAGAAAGCCLCL*SCSRAGHDVAR Trigger: CCGGGCTACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS GCA 72 bp	ACTGGAACTGCTGGCGCCGCCGCTGGATGCTGCCTCTaGCTCTGCAGCTGCTCACGCGCAGGGCACGACGTA	+
Preference number: 6 (lower is better) Translates to: TGTAGAAAGCCL*LCSCSRAGHDV Trigger: TACGTCGTGCCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS GCA 72 bp	AAGCAACGGACTGGAACTGCTGGCGCCGCCGCTGGATaGTGCCTCTGCCTCTGCAGCTGCTCACGCGCAGGG	+
Preference number: 6 (lower is better) Translates to: KQRTGTAGAAAG*CLCLCSCSRAG Trigger: CCCTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGTCCGTTGCTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1
CDS CCA 72 bp	AGTAAAGCAACGGACTGGAACTGCTGGCGCCGCCGCTaGATGCTGCCTCTGCCTCTGCAGCTGCTCACGCGC	+
Preference number: 6 (lower is better) Translates to: SKATDWNCWRRR*MLPLPLQLLTR Trigger: GCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCGGCGGCGCCAGCAGTTCCAGTCCGTTGCTTTACT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000275036.11 ENST00000344726.9 ENST00000620514.1

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