Pregenerated sensors for HMGN2 (Homo sapiens)
Ensembl gene IDs: ENSG00000198830Ensembl transcript IDs: ENST00000361427.6, ENST00000460563.5, ENST00000466194.1, ENST00000479815.5, ENST00000493418.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACATGGAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTaGATAAACCAGGTTACCCCACTTGTGGGAAAAGATCAGAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: YMEYLKAERTLFQET*INQVTPLVGKDQRQ Trigger: CTGCCTCTGATCTTTTCCCACAAGTGGGGTAACCTGGTTTATCCAAGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTCCATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR GCA 90 bp | ACAAATAACTTCTTGCCATTTCACTTAGAGAAACGTGGGGTTCTCTaGATCTCCAAACTAAAGGAATCAGGAAAGACCCCATTGTCTTTG | + |
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Preference number: 1 (lower is better) Translates to: TNNFLPFHLEKRGVL*ISKLKESGKTPLSL Trigger: CAAAGACAATGGGGTCTTTCCTGATTCCTTTAGTTTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGAAATGGCAAGAAGTTATTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR TCA 90 bp | GTCTCCAATTTACTTTATTCCTGTCCAACAATACAGCCAGGTCTGTaGAAGCAAATTCAAGGTGCAAACATGAATTTGTTACCAGTTCCA | + |
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Preference number: 1 (lower is better) Translates to: VSNLLYSCPTIQPGL*KQIQGANMNLLPVP Trigger: TGGAACTGGTAACAAATTCATGTTTGCACCTTGAATTTGCTTTCACAGACCTGGCTGTATTGTTGGACAGGAATAAAGTAAATTGGAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR CAA 90 bp | GGGGTTCTCTGCATCTCCAAACTAAAGGAATCAGGAAAGACCCCATaGTCTTTGTTTGCAGGTCTACTTAGGAGCAAAGTGTCATCTACC | + |
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Preference number: 2 (lower is better) Translates to: GVLCISKLKESGKTP*SLFAGLLRSKVSST Trigger: GGTAGATGACACTTTGCTCCTAAGTAGACCTGCAAACAAAGACAATGGGGTCTTTCCTGATTCCTTTAGTTTGGAGATGCAGAGAACCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR CAA 90 bp | CTCTGCATCTCCAAACTAAAGGAATCAGGAAAGACCCCATTGTCTTaGTTTGCAGGTCTACTTAGGAGCAAAGTGTCATCTACCTTACAA | + |
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Preference number: 2 (lower is better) Translates to: LCISKLKESGKTPLS*FAGLLRSKVSSTLQ Trigger: TTGTAAGGTAGATGACACTTTGCTCCTAAGTAGACCTGCAAACAAAGACAATGGGGTCTTTCCTGATTCCTTTAGTTTGGAGATGCAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR-3UTR CCA 90 bp | AACAATACAGCCAGGTCTGTGAAAGCAAATTCAAGGTGCAAACATGAATTTGTTAGGTTACCCCACTTGTaGGAAAAGATCAGAGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: NNTARSVKANSRCKHEFVRLPHL*EKIRGS Trigger: GCTGCCTCTGATCTTTTCCCACAAGTGGGGTAACCT...AACAAATTCATGTTTGCACCTTGAATTTGCTTTCACAGACCTGGCTGTATTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR-3UTR GCA 90 bp | AACAATACAGCCAGGTCTGTGAAAGCAAATTCAAGGTGCAAACATGAATTTGTTAAACACTGCAGGGAATaGTGCATAACCAAGTACAGA | + |
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Preference number: 2 (lower is better) Translates to: NNTARSVKANSRCKHEFVKHCRE*CITKYR Trigger: TCTGTACTTGGTTATGCAGCATTCCCTGCAGTGTTT...AACAAATTCATGTTTGCACCTTGAATTTGCTTTCACAGACCTGGCTGTATTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR-3UTR CAA 90 bp | AATAACTTCTTGCCATTTCACTTAGAGAAACGTGGGGTTCTCTGCATCTCCAAACCTGTTCCAAGAGACTaGGATAAACCAGGTTACCCC | + |
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Preference number: 3 (lower is better) Translates to: NNFLPFHLEKRGVLCISKPVPRD*DKPGYP Trigger: GGGGTAACCTGGTTTATCCAAGTCTCTTGGAACAGG...TTTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGAAATGGCAAGAAGTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR GCA 72 bp | TTCTTGCCATTTCACTTAGAGAAACGTGGGGTTCTCTaGATCTCCAAACTAAAGGAATCAGGAAAGACCCCA | + |
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Preference number: 3 (lower is better) Translates to: FLPFHLEKRGVL*ISKLKESGKTP Trigger: TGGGGTCTTTCCTGATTCCTTTAGTTTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGAAATGGCAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR-3UTR CAA 90 bp | CTTCTTGCCATTTCACTTAGAGAAACGTGGGGTTCTCTGCATCTCCAAACTAAACTAGCACTGTGTGTTTaGGAAGCTGACTATAAATCA | + |
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Preference number: 3 (lower is better) Translates to: LLAISLRETWGSLHLQTKLALCV*EADYKS Trigger: TGATTTATAGTCAGCTTCCAAAACACACAGTGCTAG...TTTAGTTTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGAAATGGCAAGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| 3UTR TCA 72 bp | TTACTTTATTCCTGTCCAACAATACAGCCAGGTCTGTaGAAGCAAATTCAAGGTGCAAACATGAATTTGTTA | + |
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Preference number: 3 (lower is better) Translates to: LLYSCPTIQPGL*KQIQGANMNLL Trigger: TAACAAATTCATGTTTGCACCTTGAATTTGCTTTCACAGACCTGGCTGTATTGTTGGACAGGAATAAAGTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR CCA 90 bp | GTTACCCCACTTGTGGGAAAAGATCAGAGGCAGCATTCCAAGCCAAACTGTATCAGGTTACCCCACTTGTaGGAAAAGATCAGAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VTPLVGKDQRQHSKPNCIRLPHL*EKIRGS Trigger: GCTGCCTCTGATCTTTTCCCACAAGTGGGGTAACCT...GATACAGTTTGGCTTGGAATGCTGCCTCTGATCTTTTCCCACAAGTGGGGTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR TCA 90 bp | ACACTGCAGGGAATGCTGCATAACCAAGTACAGAAATCACTCCATACTCCCAGCATACAGCCAGGTCTGTaGAAGCAAATTCAAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: TLQGMLHNQVQKSLHTPSIQPGL*KQIQGA Trigger: TGCACCTTGAATTTGCTTTCACAGACCTGGCTGTAT...GCTGGGAGTATGGAGTGATTTCTGTACTTGGTTATGCAGCATTCCCTGCAGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR CCA 90 bp | GTTACCCCACTTGTGGGAAAAGATCAGAGGCAGCATTCCAAGCCAAACTGTATCTCACTTAGAGAAACGTaGGGTTCTCTGCATCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: VTPLVGKDQRQHSKPNCISLRET*GSLHLQ Trigger: TTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGA...GATACAGTTTGGCTTGGAATGCTGCCTCTGATCTTTTCCCACAAGTGGGGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR GCA 90 bp | ACACTGCAGGGAATGCTGCATAACCAAGTACAGAAATCACTCCATACTCCCAGCCACTGCAGGGAATGCTaGATAACCAAGTACAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: TLQGMLHNQVQKSLHTPSHCREC*ITKYRN Trigger: ATTTCTGTACTTGGTTATGCAGCATTCCCTGCAGTG...GCTGGGAGTATGGAGTGATTTCTGTACTTGGTTATGCAGCATTCCCTGCAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR GCA 90 bp | GTTACCCCACTTGTGGGAAAAGATCAGAGGCAGCATTCCAAGCCAAACTGTATCAAACGTGGGGTTCTCTaGATCTCCAAACTAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VTPLVGKDQRQHSKPNCIKRGVL*ISKLKE Trigger: TTCCTTTAGTTTGGAGATGCAGAGAACCCCACGTTT...GATACAGTTTGGCTTGGAATGCTGCCTCTGATCTTTTCCCACAAGTGGGGTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR CCA 90 bp | CATGGAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTGGATAAACCACTGTTCCAAGAGACTTaGATAAACCAGGTTACCCCA | + |
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Preference number: 4 (lower is better) Translates to: HGVPQSRTYPVPRDLDKPLFQET*INQVTP Trigger: TGGGGTAACCTGGTTTATCCAAGTCTCTTGGAACAG...TGGTTTATCCAAGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR GCA 90 bp | CAGCTAAGTCTACTCCTGGAATCCTTCCTAACTGCACCTAGCACTGTGTGTTTTAAACACTGCAGGGAATaGTGCATAACCAAGTACAGA | + |
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Preference number: 4 (lower is better) Translates to: QLSLLLESFLTAPSTVCFKHCRE*CITKYR Trigger: TCTGTACTTGGTTATGCAGCATTCCCTGCAGTGTTT...AAAACACACAGTGCTAGGTGCAGTTAGGAAGGATTCCAGGAGTAGACTTAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR TCA 90 bp | CATGGAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTGGATAAACCACACAGAGACACTCTCTaGCATGAGTCTATTAATTTG | + |
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Preference number: 4 (lower is better) Translates to: HGVPQSRTYPVPRDLDKPHRDTL*HESINL Trigger: CAAATTAATAGACTCATGTCAGAGAGTGTCTCTGTG...TGGTTTATCCAAGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR TCA 90 bp | AATAACTTCTTGCCATTTCACTTAGAGAAACGTGGGGTTCTCTGCATCTCCAAATTCAAGGTGCAAACATaGATTTGTTACCAGTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: NNFLPFHLEKRGVLCISKFKVQT*ICYQFH Trigger: ATGGAACTGGTAACAAATTCATGTTTGCACCTTGAA...TTTGGAGATGCAGAGAACCCCACGTTTCTCTAAGTGAAATGGCAAGAAGTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS CCA 90 bp | TCCTCCTCCTCAAAAGTTTTTGTGGTTGGCTTTCTTCTAGAATGTTaGATTTCCAGAAGCCCACTCAAATGTCCCACTTTGGCTACAGGC | + |
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Preference number: 5 (lower is better) Translates to: SSSSKVFVVGFLLEC*ISRSPLKCPTLATG Trigger: GCCTGTAGCCAAAGTGGGACATTTGAGTGGGCTTCTGGAAATCCAACATTCTAGAAGAAAGCCAACCACAAAAACTTTTGAGGAGGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000460563.5 ENST00000479815.5 ENST00000493418.1 |
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| CDS-3UTR CAA 90 bp | ATTAGACTGTACATGGAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTCAGGAAAGACCCCATaGTCTTTGTTTGCAGGTCTA | + |
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Preference number: 5 (lower is better) Translates to: IRLYMEYLKAERTLFQETSGKTP*SLFAGL Trigger: TAGACCTGCAAACAAAGACAATGGGGTCTTTCCTGA...AGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTCCATGTACAGTCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS GCA 90 bp | GATTTCAAAACTATCTGTGTTCACATTCCACCTACAGCATCACTTTaGTCCCAGGCCAAAGTTCAGGTTTCAGGTACTGAGACTCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: DFKTICVHIPPTASL*SQAKVQVSGTETQY Trigger: ATACTGAGTCTCAGTACCTGAAACCTGAACTTTGGCCTGGGAGCAAAGTGATGCTGTAGGTGGAATGTGAACACAGATAGTTTTGAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493418.1 |
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| CDS-3UTR CAA 90 bp | GAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTGGATAAACCAGGTTCTAGCACTGTGTGTTTaGGAAGCTGACTATAAATCA | + |
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Preference number: 5 (lower is better) Translates to: EYLKAERTLFQETWINQVLALCV*EADYKS Trigger: TGATTTATAGTCAGCTTCCAAAACACACAGTGCTAG...AACCTGGTTTATCCAAGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS-3UTR CAA 90 bp | GAGTACCTCAAAGCAGAACGTACCCTGTTCCAAGAGACTTGGATAAACCAGGTTGGTGCAAACATGAATTaGTTACCAGTTCCATATTCT | + |
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Preference number: 5 (lower is better) Translates to: EYLKAERTLFQETWINQVGANMN*LPVPYS Trigger: AGAATATGGAACTGGTAACAAATTCATGTTTGCACC...AACCTGGTTTATCCAAGTCTCTTGGAACAGGGTACGTTCTGCTTTGAGGTACTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000361427.6 |
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| CDS CCA 72 bp | AGGAGCTCCGGCTCGCCGACCCCGAGAAGCGAGGGCTaGACCGGAGCGCAGCCGGGGAGGGCAGCGGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: RSSGSPTPRSEG*TGAQPGRAAEP Trigger: GGGCTCCGCTGCCCTCCCCGGCTGCGCTCCGGTCCAGCCCTCGCTTCTCGGGGTCGGCGAGCCGGAGCTCCT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466194.1 |
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| CDS GCA 72 bp | ACTATCTGTGTTCACATTCCACCTACAGCATCACTTTaGTCCCAGGCCAAAGTTCAGGTTTCAGGTACTGAG | + |
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Preference number: 6 (lower is better) Translates to: TICVHIPPTASL*SQAKVQVSGTE Trigger: CTCAGTACCTGAAACCTGAACTTTGGCCTGGGAGCAAAGTGATGCTGTAGGTGGAATGTGAACACAGATAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493418.1 |
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| CDS CAA 90 bp | CTTCTAGAATGTTGGATTTCCAGAAGCCCACTCAAATGTCCCACTTaGGCTACAGGCATCAGAATTTCAGAACCAGCAAAACCCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: LLECWISRSPLKCPT*ATGIRISEPAKPKG Trigger: CCCTTTGGGTTTTGCTGGTTCTGAAATTCTGATGCCTGTAGCCAAAGTGGGACATTTGAGTGGGCTTCTGGAAATCCAACATTCTAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000460563.5 ENST00000479815.5 ENST00000493418.1 |
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| CDS CCA 72 bp | AAGTTAACAGGAAAGCCACAAGCACACTGGACCAAATaGTACATTTGGAGTGATACAAGAAAAGGGCAATTA | + |
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Preference number: 6 (lower is better) Translates to: KLTGKPQAHWTK*YIWSDTRKGQL Trigger: TAATTGCCCTTTTCTTGTATCACTCCAAATGTACCATTTGGTCCAGTGTGCTTGTGGCTTTCCTGTTAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493418.1 |
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| CDS CAA 72 bp | GAACACCAGAATAAGAGACCTGAGGTTACTCCTAGCTaGAAAACTTCATGTAGTATAAAACACAATGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: EHQNKRPEVTPS*KTSCSIKHNAL Trigger: AAGGGCATTGTGTTTTATACTACATGAAGTTTTCAAGCTAGGAGTAACCTCAGGTCTCTTATTCTGGTGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000493418.1 |
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