Pregenerated sensors for HMGN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000205581Ensembl transcript IDs: ENST00000288344.14, ENST00000431390.5, ENST00000443046.5, ENST00000463631.1, ENST00000471260.1, ENST00000479586.5, ENST00000482733.1, ENST00000486741.5, ENST00000489072.5, ENST00000492280.5, ENST00000652622.1
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAAGCCTTCAAGTTTCCGTaGTGTTCTAACTGTATACAG | + |
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Preference number: 2 (lower is better) Translates to: GQVDYPATVNPFISYNEEAFKFP*CSNCIQ Trigger: CTGTATACAGTTAGAACAGCACGGAAACTTGAAGGC...TTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| 3UTR-3UTR CCA 90 bp | GGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACAGAGAATTACCACATaGTCTTCTGGTAATGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: GQVDYPATVNPFISYNEEQRITT*SSGNEK Trigger: TTTCTCATTACCAGAAGACCATGTGGTAATTCTCTG...TTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| 3UTR-3UTR CAA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATATGCCGTACGGTCAGGTaGACTATCCTGCTACAGTTA | + |
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Preference number: 3 (lower is better) Translates to: CRTVRLTILLQLIPSYHICRTVR*TILLQL Trigger: TAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| 3UTR-3UTR CAA 90 bp | CCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACTAAAAGGATCAGTTTGCCGTACGGTCAGGTaGACTATCCTGCTACAGTTA | + |
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Preference number: 3 (lower is better) Translates to: PATVNPFISYNEELKGSVCRTVR*TILLQL Trigger: TAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA...AACTGATCCTTTTAGTTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| 3UTR-3UTR CAA 90 bp | GGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAATCAAGGAAATTAATCTaGCCTCTTCTGATGACTGCA | + |
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Preference number: 3 (lower is better) Translates to: GQVDYPATVNPFISYNEESRKLI*PLLMTA Trigger: TGCAGTCATCAGAAGAGGCAAGATTAATTTCCTTGA...TTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS-3UTR GCA 90 bp | ACCATGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCAAAGGCGCGTGCCGGGTaGCTGCGGGGAAGGCGCGTG | + |
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Preference number: 4 (lower is better) Translates to: TMPYGQVDYPATVNPFISKARAG*LRGRRV Trigger: CACGCGCCTTCCCCGCAGGCACCCGGCACGCGCCTT...TGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS-3UTR GCA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAAAGGCGCGTGCCGGGTaGCTGCGGGGAAGGCGCGTG | + |
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Preference number: 4 (lower is better) Translates to: CRTVRLTILLQLIPSYHIKARAG*LRGRRV Trigger: CACGCGCCTTCCCCGCAGGCACCCGGCACGCGCCTT...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS-3UTR GCA 90 bp | GGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAAAAGGCGCGTGCCGGGTaGCTGCGGGGAAGGCGCGTG | + |
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Preference number: 4 (lower is better) Translates to: GQVDYPATVNPFISYNEEKARAG*LRGRRV Trigger: CACGCGCCTTCCCCGCAGGCACCCGGCACGCGCCTT...TTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS-3UTR GCA 90 bp | GACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACTAAAAGGAAAGGCGCGTGCCGGGTaGCTGCGGGGAAGGCGCGTG | + |
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Preference number: 4 (lower is better) Translates to: DYPATVNPFISYNEELKGKARAG*LRGRRV Trigger: CACGCGCCTTCCCCGCAGGCACCCGGCACGCGCCTT...TCCTTTTAGTTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS-3UTR GCA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATATTCTCCTGGCCTCGGTaGTATCTTGACTCTTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: CRTVRLTILLQLIPSYHIFSWPR*YLDSSL Trigger: CAGCGAAGAGTCAAGATAGCACCGAGGCCAGGAGAA...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| CDS-3UTR TCA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATATTTCATTTAGGTGTTTaGAGAATCTTCGCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: CRTVRLTILLQLIPSYHIFHLGV*RIFAAA Trigger: GGCAGCAGCGAAGATTCTTCAAACACCTAAATGAAA...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000288344.14 |
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| CDS-3UTR TCA 90 bp | ACCATGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATTTCATTTAGGTGTTTaGAGAATCTTCCGTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: TMPYGQVDYPATVNPFISFHLGV*RIFREA Trigger: AGCTTCACGGAAGATTCTTCAAACACCTAAATGAAA...TGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCATGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443046.5 |
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| CDS-3UTR GCA 90 bp | CCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACTAAAAGGATCAGTTGCCTTCAAGTTTCCGTaGTGTTCTAACTGTATACAG | + |
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Preference number: 4 (lower is better) Translates to: PATVNPFISYNEELKGSVAFKFP*CSNCIQ Trigger: CTGTATACAGTTAGAACAGCACGGAAACTTGAAGGC...AACTGATCCTTTTAGTTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| CDS-3UTR CCA 90 bp | GACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACTAAAAGGACAGAGAATTACCACATaGTCTTCTGGTAATGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: DYPATVNPFISYNEELKGQRITT*SSGNEK Trigger: TTTCTCATTACCAGAAGACCATGTGGTAATTCTCTG...TCCTTTTAGTTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| CDS GCA 90 bp | CAAACGTTCCAGAACGCCCGCCCCCGCGGCCGCCGAGCGCTCGCCTaGCCGCCCGCCGGTCTCCAAGCGCCTCCCGGGCCCGTCGCCACC | + |
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Preference number: 5 (lower is better) Translates to: QTFQNARPRGRRALA*PPAGLQAPPGPVAT Trigger: GGTGGCGACGGGCCCGGGAGGCGCTTGGAGACCGGCGGGCGGGCAGGCGAGCGCTCGGCGGCCGCGGGGGCGGGCGTTCTGGAACGTTTG 80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000489072.5 |
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| CDS GCA 90 bp | AAATGGAAGCCCCGCATTAAGAAGCAGTGTAGCCTAAGGCCCCGCTaGATCCCAATGCGCGTTTCGAGGCTTACCTTCGCTGCTGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: KWKPRIKKQCSLRPR*IPMRVSRLTFAAAF Trigger: AAAGGCAGCAGCGAAGGTAAGCCTCGAAACGCGCATTGGGATGCAGCGGGGCCTTAGGCTACACTGCTTCTTAATGCGGGGCTTCCATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000463631.1 ENST00000482733.1 ENST00000486741.5 |
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| CDS-3UTR CAA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAGGCCTCGGTGCTATCTaGACTCTTCGCTGCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: CRTVRLTILLQLIPSYHIGLGAI*TLRCCL Trigger: AAGGCAGCAGCGAAGAGTCAAGATAGCACCGAGGCC...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| CDS TCA 90 bp | ATTTCACCACTGTCGCCATCATCCACTATTCCCTACAGTTCCACATaGCAGGACAATGTCATGAAGTTGAATACCGGAGGAGTCTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: ISPLSPSSTIPYSST*QDNVMKLNTGGVSS Trigger: CGACGAGACTCCTCCGGTATTCAACTTCATGACATTGTCCTGTCATGTGGAACTGTAGGGAATAGTGGATGATGGCGACAGTGGTGAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000486741.5 |
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| CDS TCA 90 bp | GAGGAGTCTCGTCGACCGTATTCCCACCCATCCCCAAATTTGTTGTaGACTTCAACAATACTGTCCTCACAAGACCTTAACCCTCACATT | + |
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Preference number: 5 (lower is better) Translates to: EESRRPYSHPSPNLL*TSTILSSQDLNPHI Trigger: AATGTGAGGGTTAAGGTCTTGTGAGGACAGTATTGTTGAAGTTCACAACAAATTTGGGGATGGGTGGGAATACGGTCGACGAGACTCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486741.5 |
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| CDS TCA 90 bp | CCTTTTGGGAAAACTGACCTCATAGGCTCGTTCCTCAACAAACACTaGCATGAAGACTTACCTGTTGGCCTCTCAATTACATCTGATGTC | + |
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Preference number: 5 (lower is better) Translates to: PFGKTDLIGSFLNKH*HEDLPVGLSITSDV Trigger: GACATCAGATGTAATTGAGAGGCCAACAGGTAAGTCTTCATGTCAGTGTTTGTTGAGGAACGAGCCTATGAGGTCAGTTTTCCCAAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000486741.5 ENST00000492280.5 |
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| CDS-3UTR CAA 90 bp | GGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAATGCCGTACGGTCAGGTaGACTATCCTGCTACAGTTA | + |
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Preference number: 5 (lower is better) Translates to: GQVDYPATVNPFISYNEECRTVR*TILLQL Trigger: TAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA...TTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS GCA 90 bp | TTATCAAACACACGTACACCCAAAGCCAACTTCATTCTACAGACCTaGAATTCGAATCATGCAATCACGAATTTGTTAGGGAGCAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: LSNTRTPKANFILQT*NSNHAITNLLGSSQ Trigger: TTGGCTGCTCCCTAACAAATTCGTGATTGCATGATTCGAATTGCAGGTCTGTAGAATGAAGTTGGCTTTGGGTGTACGTGTGTTTGATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000471260.1 ENST00000479586.5 ENST00000486741.5 |
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| CDS-3UTR CAA 90 bp | TGCCGTACGGTCAGGTTGACTATCCTGCTACAGTTAATCCCTTCATATCATATACTTTCATTTAGGTGTTaGAAGAATCTTCGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CRTVRLTILLQLIPSYHILSFRC*KNLRCC Trigger: GCAGCAGCGAAGATTCTTCAAACACCTAAATGAAAG...TATATGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000288344.14 |
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| CDS-3UTR CAA 90 bp | GACTATCCTGCTACAGTTAATCCCTTCATATCATATAATGAGGAACTAAAAGGATGCCGTACGGTCAGGTaGACTATCCTGCTACAGTTA | + |
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Preference number: 5 (lower is better) Translates to: DYPATVNPFISYNEELKGCRTVR*TILLQL Trigger: TAACTGTAGCAGGATAGTCAACCTGACCGTACGGCA...TCCTTTTAGTTCCTCATTATATGATATGAAGGGATTAACTGTAGCAGGATAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000288344.14 ENST00000431390.5 ENST00000443046.5 ENST00000652622.1 |
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| CDS TCA 90 bp | AAGGAGATTTTAATAGTACTTGCATGTCAAGCCTCATTAGACATATaGCAAATCCTAAAGCCCGAGCTATATTTCACCACTGTCGCCATC | + |
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Preference number: 5 (lower is better) Translates to: KEILIVLACQASLDI*QILKPELYFTTVAI Trigger: GATGGCGACAGTGGTGAAATATAGCTCGGGCTTTAGGATTTGTCATATGTCTAATGAGGCTTGACATGCAAGTACTATTAAAATCTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486741.5 |
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| CDS GCA 90 bp | ACACAAAGCTTATACTTGTTTTACACATGTTCTGCTTTTCCACCCTaGAAGTTATCAAACACACGTACACCCAAAGCCAACTTCATTCTA | + |
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Preference number: 5 (lower is better) Translates to: TQSLYLFYTCSAFPP*KLSNTRTPKANFIL Trigger: TAGAATGAAGTTGGCTTTGGGTGTACGTGTGTTTGATAACTTGCAGGGTGGAAAAGCAGAACATGTGTAAAACAAGTATAAGCTTTGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000471260.1 ENST00000479586.5 ENST00000486741.5 |
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| CDS GCA 90 bp | ATGCTATATCCAAACACAAAGCTTATACTTGTTTTACACATGTTCTaGTTTTCCACCCTGCAAGTTATCAAACACACGTACACCCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: MLYPNTKLILVLHMF*FSTLQVIKHTYTQS Trigger: GCTTTGGGTGTACGTGTGTTTGATAACTTGCAGGGTGGAAAAGCAGAACATGTGTAAAACAAGTATAAGCTTTGTGTTTGGATATAGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000471260.1 ENST00000479586.5 ENST00000486741.5 |
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| CDS GCA 72 bp | CCCCGCATTAAGAAGCAGTGTAGCCTAAGGCCCCGCTaGATCCCAATGCGCGTTTCGAGGCTTACCTTCGCT | + |
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Preference number: 6 (lower is better) Translates to: PRIKKQCSLRPR*IPMRVSRLTFA Trigger: AGCGAAGGTAAGCCTCGAAACGCGCATTGGGATGCAGCGGGGCCTTAGGCTACACTGCTTCTTAATGCGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000463631.1 ENST00000482733.1 ENST00000486741.5 |
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| CDS GCA 72 bp | CTTCTACCTACAACGTTCCCTTTCTCCTGGCCTCGGTaGTATCTTGACTCTTCGCTGCTGCCTTTTTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLPTTFPFSWPR*YLDSSLLPFSA Trigger: AGCCGAAAAAGGCAGCAGCGAAGAGTCAAGATAGCACCGAGGCCAGGAGAAAGGGAACGTTGTAGGTAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000652622.1 |
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| CDS GCA 72 bp | ATAAAAACTTACACGTTCCCTTTCTCCTGGCCTCGGTaGTATCTTGACTCTTCGCTGCTGCCTTTTTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: IKTYTFPFSWPR*YLDSSLLPFSA Trigger: AGCCGAAAAAGGCAGCAGCGAAGAGTCAAGATAGCACCGAGGCCAGGAGAAAGGGAACGTGTAAGTTTTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000471260.1 ENST00000479586.5 |
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| CDS TCA 72 bp | CGTCGACCGTATTCCCACCCATCCCCAAATTTGTTGTaGACTTCAACAATACTGTCCTCACAAGACCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: RRPYSHPSPNLL*TSTILSSQDLN Trigger: GTTAAGGTCTTGTGAGGACAGTATTGTTGAAGTTCACAACAAATTTGGGGATGGGTGGGAATACGGTCGACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486741.5 |
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| CDS CAA 72 bp | CGTTCCTCAACAAACACTGACATGAAGACTTACCTGTaGGCCTCTCAATTACATCTGATGTCCCAAACCCAC | + |
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Preference number: 6 (lower is better) Translates to: RSSTNTDMKTYL*ASQLHLMSQTH Trigger: GTGGGTTTGGGACATCAGATGTAATTGAGAGGCCAACAGGTAAGTCTTCATGTCAGTGTTTGTTGAGGAACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000486741.5 ENST00000492280.5 |
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| CDS TCA 72 bp | AAAACTGACCTCATAGGCTCGTTCCTCAACAAACACTaGCATGAAGACTTACCTGTTGGCCTCTCAATTACA | + |
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Preference number: 6 (lower is better) Translates to: KTDLIGSFLNKH*HEDLPVGLSIT Trigger: TGTAATTGAGAGGCCAACAGGTAAGTCTTCATGTCAGTGTTTGTTGAGGAACGAGCCTATGAGGTCAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000486741.5 ENST00000492280.5 |
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| CDS GCA 72 bp | ACACGTACACCCAAAGCCAACTTCATTCTACAGACCTaGAATTCGAATCATGCAATCACGAATTTGTTAGGG | + |
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Preference number: 6 (lower is better) Translates to: TRTPKANFILQT*NSNHAITNLLG Trigger: CCCTAACAAATTCGTGATTGCATGATTCGAATTGCAGGTCTGTAGAATGAAGTTGGCTTTGGGTGTACGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000471260.1 ENST00000479586.5 ENST00000486741.5 |
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| CDS GCA 72 bp | TTATACTTGTTTTACACATGTTCTGCTTTTCCACCCTaGAAGTTATCAAACACACGTACACCCAAAGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: LYLFYTCSAFPP*KLSNTRTPKAN Trigger: GTTGGCTTTGGGTGTACGTGTGTTTGATAACTTGCAGGGTGGAAAAGCAGAACATGTGTAAAACAAGTATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000471260.1 ENST00000479586.5 ENST00000486741.5 |
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| CDS TCA 72 bp | CACCAAGTGCTTACGTTCTGTTTAGACTTCAAAGTCTaGTCAACCATGAAGTCAAAGGTGTATTACAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: HQVLTFCLDFKV*STMKSKVYYRN Trigger: GTTTCTGTAATACACCTTTGACTTCATGGTTGATCAGACTTTGAAGTCTAAACAGAACGTAAGCACTTGGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000486741.5 ENST00000492280.5 |
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| CDS TCA 72 bp | TTAATAGTACTTGCATGTCAAGCCTCATTAGACATATaGCAAATCCTAAAGCCCGAGCTATATTTCACCACT | + |
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Preference number: 6 (lower is better) Translates to: LIVLACQASLDI*QILKPELYFTT Trigger: AGTGGTGAAATATAGCTCGGGCTTTAGGATTTGTCATATGTCTAATGAGGCTTGACATGCAAGTACTATTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000486741.5 |
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