RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HMGCS2 (Homo sapiens)

Ensembl gene IDs: ENSG00000134240

Ensembl transcript IDs: ENST00000369406.8, ENST00000472375.5, ENST00000476640.1, ENST00000544913.2

Found 292 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAAATAGAATaGAATTGCAAGGGGACAGAGGCAGCCTGTGAGGCAAGGACCCAG +
Preference number: 1 (lower is better)
Translates to: LPCTCHSTWHVAEIE*NCKGTEAACEARTQ
Trigger: CTGGGTCCTTGCCTCACAGGCTGCCTCTGTCCCCTTGCAATTCCATTCTATTTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 90 bp ACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTGCTaGCCCCTGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACA +
Preference number: 1 (lower is better)
Translates to: TAARNDQEDLNYSSC*PLSAALCLCGVFRT
Trigger: TGTTCTAAAGACACCACATAGACAGAGAGCAGCAGACAGGGGCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR GCA 90 bp ATAACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTaGTGGCCCCTGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGA +
Preference number: 1 (lower is better)
Translates to: ITAARNDQEDLNYSS*WPLSAALCLCGVFR
Trigger: TCTAAAGACACCACATAGACAGAGAGCAGCAGACAGGGGCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 90 bp CTGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTaGGCTGGGGGAAGCTGTGTTCTACCGTTCTTATTTGCCTTGTAC +
Preference number: 1 (lower is better)
Translates to: LSAALCLCGVFRTGK*AGGSCVLPFLFALY
Trigger: GTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR TCA 90 bp AACCTTTGCGCTGTGTTTATTTGTTCAAATAACAGCGGCAAGGAATaGCCAAGAAGATCTGAACTACAGCTCCTGCTGGCCCCTGTCTGC +
Preference number: 1 (lower is better)
Translates to: NLCAVFICSNNSGKE*PRRSELQLLLAPVC
Trigger: GCAGACAGGGGCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAACAAATAAACACAGCGCAAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 90 bp GCTGTGTTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTaGCATGTGGCAGAAATAGAATGGAATTGCAAGGGGACAGAGGCA +
Preference number: 1 (lower is better)
Translates to: AVFYRSYLPCTCHST*HVAEIEWNCKGTEA
Trigger: TGCCTCTGTCCCCTTGCAATTCCATTCTATTTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR TCA 90 bp TCGATTCAAATTCATTTACCAGCTAAGAGTGGGATCTTAAAAATATaGTTCACGGGGAGAAGCTCTGCTAGCATACGTTTCCCAGGAAGC +
Preference number: 1 (lower is better)
Translates to: SIQIHLPAKSGILKI*FTGRSSASIRFPGS
Trigger: GCTTCCTGGGAAACGTATGCTAGCAGAGCTTCTCCCCGTGAATCATATTTTTAAGATCCCACTCTTAGCTGGTAAATGAATTTGAATCGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
3UTR CAA 90 bp TGTGAGGCAAGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTaGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACG +
Preference number: 2 (lower is better)
Translates to: CEARTQPSDPQGLAG*LHVRLGLYSGFQET
Trigger: CGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCTTGCCTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR TCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGGGGATCTTAAAAATATaGTTCACGGGGAGAAGCTCT +
Preference number: 2 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLGILKI*FTGRSS
Trigger: AGAGCTTCTCCCCGTGAATCATATTTTTAAGATCCC...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
3UTR-3UTR GCA 90 bp GCAGGCTTGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGTCCATTGCTCCATCTTaGTCTTTCACAAAGGACCCC +
Preference number: 2 (lower is better)
Translates to: AGLLHVRLGLYSGFQETQSIAPS*SFTKDP
Trigger: GGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATGGA...CTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR GCA 90 bp GCAGGCTTGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGAGGCAACAGCTGATCTaGATGCACATTTCTGGAGTC +
Preference number: 2 (lower is better)
Translates to: AGLLHVRLGLYSGFQETQRQQLI*MHISGV
Trigger: GACTCCAGAAATGTGCATGCAGATCAGCTGTTGCCT...CTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR CCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCACAGTGATTGCAGCATaGAGAGGAATGAAGGGCCCG +
Preference number: 2 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCTVIAA*RGMKGP
Trigger: CGGGCCCTTCATTCCTCTCCATGCTGCAATCACTGT...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
3UTR-3UTR CCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCAACAGTGATTGCAGCATaGAGAGGAATGAAGGGCCCG +
Preference number: 2 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPTVIAA*RGMKGP
Trigger: CGGGCCCTTCATTCCTCTCCATGCTGCAATCACTGT...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
3UTR CAA 90 bp GAACAGGGAAGTGGGCTGGGGGAAGCTGTGTTCTACCGTTCTTATTaGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAAATAGAA +
Preference number: 2 (lower is better)
Translates to: EQGSGLGEAVFYRSY*PCTCHSTWHVAEIE
Trigger: TTCTATTTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCAGCCCACTTCCCTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR TCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCCTCACTCTACAGGGCTaGTGCTTATGGGGCTACTAT +
Preference number: 2 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCLTLQG*CLWGYY
Trigger: ATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAG...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
3UTR CAA 90 bp TCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGGGTTaGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCT +
Preference number: 2 (lower is better)
Translates to: SDPQGLAGLLHVRLG*YSGFQETQESFPLS
Trigger: AGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR TCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCCTCACTCTACAGGGCTaGTGCTTATGGGGCTACTAT +
Preference number: 2 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLLTLQG*CLWGYY
Trigger: ATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAG...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR TCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCATTTCTGGAGTCCAGTaGTTCAGGAAGAGGTCTTCT +
Preference number: 2 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLISGVQ*FRKRSS
Trigger: AGAAGACCTCTTCCTGAATCACTGGACTCCAGAAAT...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR TCA 90 bp GTTCAAATAACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTGCGGGATCTTAAAAATATaGTTCACGGGGAGAAGCTCT +
Preference number: 2 (lower is better)
Translates to: VQITAARNDQEDLNYSSCGILKI*FTGRSS
Trigger: AGAGCTTCTCCCCGTGAATCATATTTTTAAGATCCC...GCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR GCA 72 bp GTGGGCTGGGGGAAGCTGTGTTCTACCGTTCTTATTTaGCTTGTACCTGTCATAGCACTTGGCATGTGGCAG +
Preference number: 3 (lower is better)
Translates to: VGWGKLCSTVLI*LVPVIALGMWQ
Trigger: CTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCAGCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR GCA 72 bp GCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTaGTGGCCCCTGTCTGCTGCTCTCTGTCTATGTGGT +
Preference number: 3 (lower is better)
Translates to: ARNDQEDLNYSS*WPLSAALCLCG
Trigger: ACCACATAGACAGAGAGCAGCAGACAGGGGCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR CAA 90 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGAAGTTTATCTGGATCTaGAAGGCAACAGCTGATCTG +
Preference number: 3 (lower is better)
Translates to: RTQPSDPQGLAGLLHVRLKFIWI*KATADL
Trigger: CAGATCAGCTGTTGCCTTCAAGATCCAGATAAACTT...CAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 72 bp ACCTGTCATAGCACTTGGCATGTGGCAGAAATAGAATaGAATTGCAAGGGGACAGAGGCAGCCTGTGAGGCA +
Preference number: 3 (lower is better)
Translates to: TCHSTWHVAEIE*NCKGTEAACEA
Trigger: TGCCTCACAGGCTGCCTCTGTCCCCTTGCAATTCCATTCTATTTCTGCCACATGCCAAGTGCTATGACAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 72 bp GCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTaGGCTGGGGGAAGCTGTGTTCTACCGTTCTTATTT +
Preference number: 3 (lower is better)
Translates to: ALCLCGVFRTGK*AGGSCVLPFLF
Trigger: AAATAAGAACGGTAGAACACAGCTTCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR-3UTR CAA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCGAGGTCTTCTCTCCATaGCTCCATCTTGCTCTTTCA +
Preference number: 3 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLEVFSP*LHLALS
Trigger: TGAAAGAGCAAGATGGAGCAATGGAGAGAAGACCTC...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR TCA 72 bp GCTGTGTTTATTTGTTCAAATAACAGCGGCAAGGAATaGCCAAGAAGATCTGAACTACAGCTCCTGCTGGCC +
Preference number: 3 (lower is better)
Translates to: AVFICSNNSGKE*PRRSELQLLLA
Trigger: GGCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAACAAATAAACACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CCA 72 bp TACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTaGCATGTGGCAGAAATAGAATGGAATTGCAAGGGG +
Preference number: 3 (lower is better)
Translates to: YRSYLPCTCHST*HVAEIEWNCKG
Trigger: CCCCTTGCAATTCCATTCTATTTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR GCA 72 bp ATTTTTGGCTATAGAAGGCAAAAACTTGTTAACCTTTaGGCTGTGTTTATTTGTTCAAATAACAGCGGCAAG +
Preference number: 3 (lower is better)
Translates to: IFGYRRQKLVNL*AVFICSNNSGK
Trigger: CTTGCCGCTGTTATTTGAACAAATAAACACAGCGCAAAGGTTAACAAGTTTTTGCCTTCTATAGCCAAAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGCCTTTGGTGGGCTACTaGGAGCAGGCGAGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLPLVGY*EQASRC
Trigger: ACACCTGCTCGCCTGCTCCCAGTAGCCCACCAAAGG...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGGAGCCAGCCAGTTCTTaGGCAGAGTGGTGGGACAGA +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLEPASS*AEWWDR
Trigger: TCTGTCCCACCACTCTGCCCAAGAACTGGCTGGCTC...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGGCCAAGTATCTGTTTTaGCCAGGGGGACAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLAKYLF*PGGQQR
Trigger: CCTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGC...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGAGAAGGCACCAATCCTaGAGCCAGCCAGTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLRRHQS*SQPVLG
Trigger: CCCAAGAACTGGCTGGCTCCAGGATTGGTGCCTTCT...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGGTAGAAAACCTTTGGTaGGCTACTGGGAGCAGGCGA +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLVENLW*ATGSRR
Trigger: TCGCCTGCTCCCAGTAGCCCACCAAAGGTTTTCTAC...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGACAGTGATTGCAGCATaGAGAGGAATGAAGGGCCCG +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLTVIAA*RGMKGP
Trigger: CGGGCCCTTCATTCCTCTCCATGCTGCAATCACTGT...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGCACCGTAGCAGGCATTaGTGGTATCTATGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLHRSRH*WYLCPQ
Trigger: TTGAGGGCATAGATACCACCAATGCCTGCTACGGTG...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGGACGAGCATTACCACTaGGATAGACGGCAATGTCTC +
Preference number: 4 (lower is better)
Translates to: RTQPSDPQGLAGLLHVRLDEHYH*DRRQCL
Trigger: GAGACATTGCCGTCTATCCCAGTGGTAATGCTCGTC...CAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CAA 72 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTaGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: RTQPSDPQGLAG*LHVRLGLYSGF
Trigger: GAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCCTCCAGGGCCAGGATaGCCACGTCCTTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQIPPGPG*PRPLAK
Trigger: CTTGGCCAAAGGACGTGGGCATCCTGGCCCTGGAGG...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAATCTTGGGCAGAGTGGTaGGACAGAAGCGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQSWAEW*DRSEAR
Trigger: CCTGGCCTCGCTTCTGTCCCACCACTCTGCCCAAGA...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGCTTTGGACTTGTCAATaGTGGTCTCAGTGCCTACTT +
Preference number: 4 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLLWTCQ*WSQCLL
Trigger: AAGTAGGCACTGAGACCATCATTGACAAGTCCAAAG...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGACTGACAGGAAGTCATTaGACATCAGGCGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGLTGSH*TSGEPE
Trigger: CTCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAG...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGACAGAGGCAGCCTGTaGGGCAAGGACCCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: SSLYRADAYGATMSIQIHDRGSL*GKDPAL
Trigger: GAGGGCTGGGTCCTTGCCTCACAGGCTGCCTCTGTC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAATGCCTACTTCCAGCCTaGCCACAGAGTCCCATGGGA +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQCLLPA*PQSPMG
Trigger: TCCCATGGGACTCTGTGGGCAGGCTGGAAGTAGGCA...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAATACTTTCGGCGATGCTaGTCGTCCACTCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQYFRRC*SSTRSR
Trigger: CCTGGAGCGAGTGGACGAGCAGCATCGCCGAAAGTA...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATCTTGGGCAGAGTGGTaGGACAGAAGCGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPSWAEW*DRSEAR
Trigger: CCTGGCCTCGCTTCTGTCCCACCACTCTGCCCAAGA...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGCAGGCGAGCAGGTGTaGGGGAGGTTTCCTGCACCG +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKAGEQV*GRFPAP
Trigger: CGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTGC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAACCTCCAGGGCCAGGATaGCCACGTCCTTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAEPPGPG*PRPLAK
Trigger: CTTGGCCAAAGGACGTGGGCATCCTGGCCCTGGAGG...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCCCATGGGAGCTGTATaGGCTCCATCAGCCGTTGCA +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISPMGAV*APSAVA
Trigger: TGCAACGGCTGATGGAGCGCATACAGCTCCCATGGG...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTTGCCTACTTCCAGCCTaGCCACAGAGTCCCATGGGA +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIACLLPA*PQSPMG
Trigger: TCCCATGGGACTCTGTGGGCAGGCTGGAAGTAGGCA...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGATTGGCAGGTCTGATGTaGTGGACACCAACTTGTCCA +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGLAGLM*WTPTCP
Trigger: TGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAA...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTGCATACTTTCGGCGATaGTGCTCGTCCACTCGCTCC +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQIAYFRR*CSSTRS
Trigger: GGAGCGAGTGGACGAGCAGCATCGCCGAAAGTATGC...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TGGGGGAAGCTGTGTTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTCCTTTGGTGGGCTACTaGGAGCAGGCGAGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: WGKLCSTVLICLVPVIALPLVGY*EQASRC
Trigger: ACACCTGCTCGCCTGCTCCCAGTAGCCCACCAAAGG...AAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCGCCCACAGAGTCCCATaGGAGCTGTATGCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLAHRVP*ELYALH
Trigger: ATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGC...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAACTCCGGCCCCACCTGTaGGACGAGCATTACCACTGG +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAELRPHL*DEHYHW
Trigger: CCAGTGGTAATGCTCGTCCCACAGGTGGGGCCGGAG...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp TGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGCGAGCCAGAGACTTCTaGACCATCTTGCAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: CLLLSVYVVSLEQGSGLGRARDF*TILQKG
Trigger: ACCCTTTTGCAAGATGGTCCAGAAGTCTCTGGCTCG...CCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTGAGCCAGCCAGTTCTTaGGCAGAGTGGTGGGACAGA +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQIEPASS*AEWWDR
Trigger: TCTGTCCCACCACTCTGCCCAAGAACTGGCTGGCTC...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAGCAGGCGAGCAGGTGTaGGGGAGGTTTCCTGCACCG +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGAGEQV*GRFPAP
Trigger: CGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTGC...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCGATGTCCTCTTGGACTaGGCAGAAGCCCATACGGGT +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLDVLLD*AEAHTG
Trigger: ACCCGTATGGGCTTCTGCTCAGTCCAAGAGGACATC...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGATGTCCTCTTGGACTaGGCAGAAGCCCATACGGGT +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFDVLLD*AEAHTG
Trigger: ACCCGTATGGGCTTCTGCTCAGTCCAAGAGGACATC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp TGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGCTTGAAGGCAACAGCTaGTCTGCATGCACATTTCTG +
Preference number: 4 (lower is better)
Translates to: CLLLSVYVVSLEQGSGLGLEGNS*SACTFL
Trigger: CAGAAATGTGCATGCAGATCAGCTGTTGCCTTCAAG...CCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCGGAGTCAACAGACGCTaGATCTCCAGAGGAGCAAGC +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLGVNRR*ISRGAS
Trigger: GCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCC...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGTGAGGGAGGTTTCCTaGACCGCTCTTGTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFVREVS*TALVSC
Trigger: GCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCAC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGATCCATTGCTCCATCTTaGTCTTTCACAAAGGACCCC +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGSIAPS*SFTKDP
Trigger: GGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATGGA...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCCTGCTGGCCCCTGTCTaGTGCTCTCTGTCTATGTGG +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLLLAPV*CSLSMW
Trigger: CCACATAGACAGAGAGCAGCAGACAGGGGCCAGCAG...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAGCTGTAGAAAACCTTTaGTGGGCTACTGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQAVENL*WATGSR
Trigger: CCTGCTCCCAGTAGCCCACCAAAGGTTTTCTACAGC...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCAAGCCCATACGGGTCTaGCCCAAGCCCACTGTATAC +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCKPIRV*PKPTVY
Trigger: GTATACAGTGGGCTTGGGCCAGACCCGTATGGGCTT...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGATGTTCCCATTGTGAGTaGAGAGGTAAAGGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGCSHCE*RGKGKP
Trigger: AGGCTTCCCTTTACCTCTCCACTCACAATGGGAACA...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGCAGGTCTGATGTGCTaGACACCAACTTGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFAGLMC*TPTCPG
Trigger: CCCTGGACAAGTTGGTGTCCAGCACATCAGACCTGC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCAAACAGGGAAGTGGGCTaGGGGAAGCTGTGTTCTACC +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPNREVG*GKLCST
Trigger: GGTAGAACACAGCTTCCCCCAGCCCACTTCCCTGTT...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
3UTR CAA 72 bp AGTGGGCTGGGGGAAGCTGTGTTCTACCGTTCTTATTaGCCTTGTACCTGTCATAGCACTTGGCATGTGGCA +
Preference number: 4 (lower is better)
Translates to: SGLGEAVFYRSY*PCTCHSTWHVA
Trigger: TGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCAGCCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCCTGACAGGAAGTCATTaGACATCAGGCGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCLTGSH*TSGEPE
Trigger: CTCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAG...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCGCACCCGTACAGGGATaGGGTGTACATGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCAPVQG*GVHVPI
Trigger: AATGGGAACATGTACACCTCATCCCTGTACGGGTGC...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCGCGTTTTGGCAGGTCTaGTGTGCTGGACACCAACTT +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLAFWQV*CAGHQL
Trigger: AAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGC...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAATACTTTCGGCGATGCTaGTCGTCCACTCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAEYFRRC*SSTRSR
Trigger: CCTGGAGCGAGTGGACGAGCAGCATCGCCGAAAGTA...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGAAGGTCTTCTCTCCATTaGTCCATCTTGCTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGRSSLH*SILLFH
Trigger: GTGAAAGAGCAAGATGGAGCAATGGAGAGAAGACCT...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCTCTGAACTACAGCTCCTaGTGGCCCCTGTCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: AGFVFWVPRNAGIISSFSLNYSS*WPLSAA
Trigger: AGCAGCAGACAGGGGCCAGCAGGAGCTGTAGTTCAG...AGAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GTTCAAATAACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTGCAAGCCCATACGGGTCTaGCCCAAGCCCACTGTATAC +
Preference number: 4 (lower is better)
Translates to: VQITAARNDQEDLNYSSCKPIRV*PKPTVY
Trigger: GTATACAGTGGGCTTGGGCCAGACCCGTATGGGCTT...GCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCAGGCTTGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAGTTGATGTCCTCTTaGACTGAGCAGAAGCCCATA +
Preference number: 4 (lower is better)
Translates to: AGLLHVRLGLYSGFQETQELMSS*TEQKPI
Trigger: TATGGGCTTCTGCTCAGTCCAAGAGGACATCAACTC...CTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGCCCACAGAGTCCCATaGGAGCTGTATGCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: SSLYRADAYGATMSIQIHAHRVP*ELYALH
Trigger: ATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGACGTAGCAGGCATTGGTaGTATCTATGCCCTCAATAT +
Preference number: 4 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGRSRHW*YLCPQY
Trigger: ATATTGAGGGCATAGATACCACCAATGCCTGCTACG...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCCTCCACAGACCACCATaGCATAACGACCATCCCAGG +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLLHRPP*HNDHPR
Trigger: CCTGGGATGGTCGTTATGCCATGGTGGTCTGTGGAG...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCAGGCTTGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGCCCCTTATATAAGCTaGTTTGTGTGTCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGLLHVRLGLYSGFQETQAPYIS*FVCHCW
Trigger: CCAGCAGTGACACACAAACCAGCTTATATAAGGGGC...CTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCGCACCCGTACAGGGATaGGGTGTACATGTTCCCATT +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLAPVQG*GVHVPI
Trigger: AATGGGAACATGTACACCTCATCCCTGTACGGGTGC...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCTCACTCTACAGGGCTaGTGCTTATGGGGCTACTAT +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQILTLQG*CLWGYY
Trigger: ATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAG...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCATGACCAAGAAGATCTaGACTACAGCTCCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFMTKKI*TTAPAG
Trigger: GCCAGCAGGAGCTGTAGTTCAGATCTTCTTGGTCAT...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTACCGCTCTTGTCAGTTaGAGAATGCGCTTCACTGGA +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQITALVS*RMRFTG
Trigger: TCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGT...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCTGTGAGGGAGGTTTCCTaGACCGCTCTTGTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: AGFVFWVPRNAGIISSFSVREVS*TALVSC
Trigger: GCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCAC...AGAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp TTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCCCATGGGAGCTGTATaGGCTCCATCAGCCGTTGCA +
Preference number: 4 (lower is better)
Translates to: LGWVCILGSKKRRNHFLFPMGAV*APSAVA
Trigger: TGCAACGGCTGATGGAGCGCATACAGCTCCCATGGG...AAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCTTGGCAGGTCTGATGTaGTGGACACCAACTTGTCCA +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISLAGLM*WTPTCP
Trigger: TGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAA...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTGCATACTTTCGGCGATaGTGCTCGTCCACTCGCTCC +
Preference number: 4 (lower is better)
Translates to: LGWVCILGSKKRRNHFLFAYFRR*CSSTRS
Trigger: GGAGCGAGTGGACGAGCAGCATCGCCGAAAGTATGC...AAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCAGAATGCGCTTCACTaGAGTCAACAGACGCTGCAT +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQIQNALH*SQQTLH
Trigger: ATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTG...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCAGAATGCGCTTCACTaGAGTCAACAGACGCTGCAT +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLQNALH*SQQTLH
Trigger: ATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTG...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGATGCCCACGTCCTTTaGCCAAGTATCTGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFDAHVL*PSICFG
Trigger: GCCAAAACAGATACTTGGCCAAAGGACGTGGGCATC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCTGTCCACATATTGGGCTaGGAAGTAGACCTCCAGGGC +
Preference number: 4 (lower is better)
Translates to: AGFVFWVPRNAGIISSFSVHILG*EVDLQG
Trigger: GCCCTGGAGGTCTACTTCCCAGCCCAATATGTGGAC...AGAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTTTCTCCAGGTCAGTTTaGTCCACATATTGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIAFSRSV*STYWAG
Trigger: CCCAGCCCAATATGTGGACCAAACTGACCTGGAGAA...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAGAGTTGATGTCCTCTTaGACTGAGCAGAAGCCCATA +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQELMSS*TEQKPI
Trigger: TATGGGCTTCTGCTCAGTCCAAGAGGACATCAACTC...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCGAGCCAGAGACTTCTaGACCATCTTGCAAAAGGGT +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISRARDF*TILQKG
Trigger: ACCCTTTTGCAAGATGGTCCAGAAGTCTCTGGCTCG...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp TTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTTCAGGCACAGGGAGTTaGTGTCCTCTTGGACTGAGC +
Preference number: 4 (lower is better)
Translates to: LGWVCILGSKKRRNHFLFSGTGS*CPLGLS
Trigger: GCTCAGTCCAAGAGGACATCAACTCCCTGTGCCTGA...AAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTTGTGTCACTGCTGGCTaGCAGGAAGTCATTGAACAT +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIACVTAG*QEVIEH
Trigger: ATGTTCAATGACTTCCTGTCAGCCAGCAGTGACACA...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTTTGTCGAACATGTCCTaGGAGGCCTTTAGAAGTGCT +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQILSNMS*EAFRSA
Trigger: AGCACTTCTAAAGGCCTCTCAGGACATGTTCGACAA...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCCTTGAAGGCAACAGCTaGTCTGCATGCACATTTCTG +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFLEGNS*SACTFL
Trigger: CAGAAATGTGCATGCAGATCAGCTGTTGCCTTCAAG...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGGAGTCAACAGACGCTaGATCTCCAGAGGAGCAAGC +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKGVNRR*ISRGAS
Trigger: GCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCAGCTTTCCATGGATCTaGAGAACACCTTTAGACGGG +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLSFPWI*RTPLDG
Trigger: CCCGTCTAAAGGTGTTCTGCAGATCCATGGAAAGCT...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATCCATTGCTCCATCTTaGTCTTTCACAAAGGACCCC +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPSIAPS*SFTKDP
Trigger: GGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATGGA...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCAGGCAACAGCTGATCTaGATGCACATTTCTGGAGTC +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCRQQLI*MHISGV
Trigger: GACTCCAGAAATGTGCATGCAGATCAGCTGTTGCCT...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGCCAAGTATCTGTTTTaGCCAGGGGGACAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKAKYLF*PGGQQR
Trigger: CCTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TGGGGGAAGCTGTGTTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTTTCTCCAGGTCAGTTTaGTCCACATATTGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: WGKLCSTVLICLVPVIALFSRSV*STYWAG
Trigger: CCCAGCCCAATATGTGGACCAAACTGACCTGGAGAA...AAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAATACACATTCTCCATATaGGTTCCCCTCAGCCCTCGC +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAEYTFSI*VPLSPR
Trigger: GCGAGGGCTGAGGGGAACCCATATGGAGAATGTGTA...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCTTCCCATCCACTATTaGGTACTCCGAGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQILPIHY*VLRGQI
Trigger: AATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAG...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGCAAGTAGCACTGGATaGAAAGCTTCCCATCCACTA +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFASSTG*KASHPL
Trigger: TAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTGCCCCTTATATAAGCTaGTTTGTGTGTCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIAAPYIS*FVCHCW
Trigger: CCAGCAGTGACACACAAACCAGCTTATATAAGGGGC...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCTATCCAGGTCCTTGTTaGTGTAGGTGTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISYPGPC*CRCLPA
Trigger: AGCTGGAAGACACCTACACCAACAAGGACCTGGATA...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGCAGGTCTGATGTGCTaGACACCAACTTGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKAGLMC*TPTCPG
Trigger: CCCTGGACAAGTTGGTGTCCAGCACATCAGACCTGC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCAGGTACCAAGTACCTaGGAAAAGGCTGTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLQVPST*EKAVCV
Trigger: GACACAAACAGCCTTTTCCCAGGTACTTGGTACCTG...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCACAGTGATTGCAGCATaGAGAGGAATGAAGGGCCCG +
Preference number: 4 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLTVIAA*RGMKGP
Trigger: CGGGCCCTTCATTCCTCTCCATGCTGCAATCACTGT...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCCTTTGGACTTGTCAATaGTGGTCTCAGTGCCTACTT +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFLWTCQ*WSQCLL
Trigger: AAGTAGGCACTGAGACCATCATTGACAAGTCCAAAG...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGCGTTTTGGCAGGTCTaGTGTGCTGGACACCAACTT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKAFWQV*CAGHQL
Trigger: AAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCGGTTCATTATTTCTGTaGACTCCTCAGGAGACACAC +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISGSLFL*TPQETH
Trigger: GTGTGTCTCCTGAGGAGTTCACAGAAATAATGAACC...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTCTCACTCTACAGGGCTaGTGCTTATGGGGCTACTAT +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLLTLQG*CLWGYY
Trigger: ATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAG...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCAATTTCTGGAGTCCAGTaGTTCAGGAAGAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPISGVQ*FRKRSS
Trigger: AGAAGACCTCTTCCTGAATCACTGGACTCCAGAAAT...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCTTGTCAGTTGCAGAATaGGCTTCACTGGAGTCAACA +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCLSVAE*ASLEST
Trigger: TGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAA...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCTTGTCAGTTGCAGAATaGGCTTCACTGGAGTCAACA +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISLSVAE*ASLEST
Trigger: TGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAA...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCAGCTTTCCATGGATCTaGAGAACACCTTTAGACGGG +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLSFPWI*RTPLDG
Trigger: CCCGTCTAAAGGTGTTCTGCAGATCCATGGAAAGCT...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAGTCCACATATTGGGCTaGGAAGTAGACCTCCAGGGC +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGVHILG*EVDLQG
Trigger: GCCCTGGAGGTCTACTTCCCAGCCCAATATGTGGAC...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCAGTATTGCCTGAATCCTaGAAGAGTTCCATGAGCACT +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPVLPES*KSSMST
Trigger: AGTGCTCATGGAACTCTTCCAGGATTCAGGCAATAC...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCCGTAGCAGGCATTGGTaGTATCTATGCCCTCAATAT +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCRSRHW*YLCPQY
Trigger: ATATTGAGGGCATAGATACCACCAATGCCTGCTACG...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAACACCGTAGCAGGCATTaGTGGTATCTATGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAEHRSRH*WYLCPQ
Trigger: TTGAGGGCATAGATACCACCAATGCCTGCTACGGTG...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAACTCCGAGGCCAAATTTaGTTTGTAGAAGTCATACAC +
Preference number: 4 (lower is better)
Translates to: DGSSLYRADAYGATMSIQLRGQI*FVEVIH
Trigger: GTGTATGACTTCTACAAACCAAATTTGGCCTCGGAG...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TGGGGGAAGCTGTGTTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGCAAGTAGCACTGGATaGAAAGCTTCCCATCCACTA +
Preference number: 4 (lower is better)
Translates to: WGKLCSTVLICLVPVIALASSTG*KASHPL
Trigger: TAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGC...AAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp TGGGGGAAGCTGTGTTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTCAGGTACCAAGTACCTaGGAAAAGGCTGTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: WGKLCSTVLICLVPVIALQVPST*EKAVCV
Trigger: GACACAAACAGCCTTTTCCCAGGTACTTGGTACCTG...AAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAACACAGCTTCCCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCTGCATGCACATTTCTaGAGTCCAGTGATTCAGGAA +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIALHAHF*SPVIQE
Trigger: TTCCTGAATCACTGGACTCCAGAAATGTGCATGCAG...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCTGCATGCACATTTCTaGAGTCCAGTGATTCAGGAA +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISLHAHF*SPVIQE
Trigger: TTCCTGAATCACTGGACTCCAGAAATGTGCATGCAG...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTAGGCAACAGCTGATCTaGATGCACATTTCTGGAGTC +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLRQQLI*MHISGV
Trigger: GACTCCAGAAATGTGCATGCAGATCAGCTGTTGCCT...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCGTATTGCCTGAATCCTaGAAGAGTTCCATGAGCACT +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLVLPES*KSSMST
Trigger: AGTGCTCATGGAACTCTTCCAGGATTCAGGCAATAC...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCTCCGAGGCCAAATTTaGTTTGTAGAAGTCATACAC +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQILRGQI*FVEVIH
Trigger: GTGTATGACTTCTACAAACCAAATTTGGCCTCGGAG...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCGGTAAAGGGAAGCCTTaGTTTTCTTGTCGAACATGT +
Preference number: 4 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLGKGKP*FSCRTC
Trigger: ACATGTTCGACAAGAAAACCAAGGCTTCCCTTTACC...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCGCTGGGTTTGTATTCTaGGTTCCAAGAAACGCAGGA +
Preference number: 4 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLAGFVF*VPRNAG
Trigger: TCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGC...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTGCTGCATGTTAGGCTaGGTTTGTATTCTGGGTTCC +
Preference number: 4 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLCCMLG*VCILGS
Trigger: GGAACCCAGAATACAAACCCAGCCTAACATGCAGCA...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTACCTGTCATAGCACTTaGCATGTGGCAGAAATAGAA +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIATCHST*HVAEIE
Trigger: TTCTATTTCTGCCACATGCCAAGTGCTATGACAGGT...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGTACACATTCTCCATATaGGTTCCCCTCAGCCCATCC +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKYTFSI*VPLSPS
Trigger: GGATGGGCTGAGGGGAACCCATATGGAGAATGTGTA...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000544913.2
CDS-3UTR TCA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCAATATCAGTATTGCCTaGATCCTGGAAGAGTTCCAT +
Preference number: 4 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFNISIA*ILEEFH
Trigger: ATGGAACTCTTCCAGGATTCAGGCAATACTGATATT...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGTGTGTCACTGCTGGCTaGCAGGAAGTCATTGAACAT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKCVTAG*QEVIEH
Trigger: ATGTTCAATGACTTCCTGTCAGCCAGCAGTGACACA...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGTTGTCGAACATGTCCTaGGAGGCCTTTAGAAGTGCT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKLSNMS*EAFRSA
Trigger: AGCACTTCTAAAGGCCTCTCAGGACATGTTCGACAA...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp TTCTACCGTTCTTATTTGCCTTGTACCTGTCATAGCACTTGGCATGTGGCAGAAGGTTCATTATTTCTGTaGACTCCTCAGGAGACACAC +
Preference number: 4 (lower is better)
Translates to: FYRSYLPCTCHSTWHVAEGSLFL*TPQETH
Trigger: GTGTGTCTCCTGAGGAGTTCACAGAAATAATGAACC...TTCTGCCACATGCCAAGTGCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCGGGATCTTAAAAATATaGTTCACGGGGAGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLGILKI*FTGRSS
Trigger: AGAGCTTCTCCCCGTGAATCATATTTTTAAGATCCC...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTAACAGCGGCAAGGAATaGCCAAGAAGATCTGAACTA +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLNSGKE*PRRSEL
Trigger: TAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTT...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCCCTCAATATCAGTATTaGCTGAATCCTGGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCPQYQY*LNPGRV
Trigger: AACTCTTCCAGGATTCAGGCAATACTGATATTGAGG...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCTCAATATCAGTATTaGCTGAATCCTGGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: ACTFLESSDSGRGLLSIAPQYQY*LNPGRV
Trigger: AACTCTTCCAGGATTCAGGCAATACTGATATTGAGG...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCACATTGGTGGTATCTATaGCCTCAATATCAGTATTGC +
Preference number: 4 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPHWWYL*PQYQYC
Trigger: GCAATACTGATATTGAGGGCATAGATACCACCAATG...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTACTTCTGGACCATCTTaGAAAAGGGTGTATGAAAGA +
Preference number: 4 (lower is better)
Translates to: GSSLYRADAYGATMSIQITSGPS*KRVYER
Trigger: TCTTTCATACACCCTTTTGCAAGATGGTCCAGAAGT...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAGATGCCCACGTCCTTTaGCCAAGTATCTGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGDAHVL*PSICFG
Trigger: GCCAAAACAGATACTTGGCCAAAGGACGTGGGCATC...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGCTTCCCATCCACTATTaGGTACTCCGAGGCCAAATT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKLPIHY*VLRGQI
Trigger: AATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAG...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGTATCCAGGTCCTTGTTaGTGTAGGTGTCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKYPGPC*CRCLPA
Trigger: AGCTGGAAGACACCTACACCAACAAGGACCTGGATA...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CCA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGTGGCAGAAATAGAATaGAATTGCAAGGGGACAGAG +
Preference number: 4 (lower is better)
Translates to: SSLYRADAYGATMSIQIHVAEIE*NCKGTE
Trigger: CTCTGTCCCCTTGCAATTCCATTCTATTTCTGCCAC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGGTCTTCTCTCCATTaGTCCATCTTGCTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKRSSLH*SILLFH
Trigger: GTGAAAGAGCAAGATGGAGCAATGGAGAGAAGACCT...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GTTCAAATAACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTGCTCTACCGTTCTTATTTaGCTTGTACCTGTCATAGCA +
Preference number: 4 (lower is better)
Translates to: VQITAARNDQEDLNYSSCSTVLI*LVPVIA
Trigger: TGCTATGACAGGTACAAGGCAAATAAGAACGGTAGA...GCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGATGTTCCCATTGTGAGTaGAGAGGTAAAGGGAAGCCT +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGCSHCE*RGKGKP
Trigger: AGGCTTCCCTTTACCTCTCCACTCACAATGGGAACA...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTAATATCAGTATTGCCTaGATCCTGGAAGAGTTCCAT +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLNISIA*ILEEFH
Trigger: ATGGAACTCTTCCAGGATTCAGGCAATACTGATATT...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR TCA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGGGGATCTTAAAAATATaGTTCACGGGGAGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: RADAYGATMSIQIHLPAKGILKI*FTGRSS
Trigger: AGAGCTTCTCCCCGTGAATCATATTTTTAAGATCCC...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR TCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAATTTCTGGAGTCCAGTaGTTCAGGAAGAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGISGVQ*FRKRSS
Trigger: AGAAGACCTCTTCCTGAATCACTGGACTCCAGAAAT...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCACTGTATACTTTCCTaGTTCCACATTGTTATACTT +
Preference number: 4 (lower is better)
Translates to: HCSILLFHKGPLVHSTISHCILS*FHIVIL
Trigger: AAGTATAACAATGTGGAAGCAGGAAAGTATACAGTG...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCCACTGTATACTTTCCTaGTTCCACATTGTTATACTT +
Preference number: 4 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCHCILS*FHIVIL
Trigger: AAGTATAACAATGTGGAAGCAGGAAAGTATACAGTG...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR GCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTCATTGGTGGTATCTATaGCCTCAATATCAGTATTGC +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLHWWYL*PQYQYC
Trigger: GCAATACTGATATTGAGGGCATAGATACCACCAATG...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR GCA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTACTTCTGGACCATCTTaGAAAAGGGTGTATGAAAGA +
Preference number: 4 (lower is better)
Translates to: VRLGLYSGFQETQESFPLTSGPS*KRVYER
Trigger: TCTTTCATACACCCTTTTGCAAGATGGTCCAGAAGT...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CCA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAGGTAAAGGGAAGCCTTaGTTTTCTTGTCGAACATGT +
Preference number: 4 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGGKGKP*FSCRTC
Trigger: ACATGTTCGACAAGAAAACCAAGGCTTCCCTTTACC...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 90 bp CTGCCCACAGAGTCCCATGGGAGCTGTATGCGCTCCATCAGCCGTTaGACCACCGTCAGGCACAGGGAGTTGATGTCCTCTTGGACTGAG +
Preference number: 5 (lower is better)
Translates to: LPTESHGSCMRSISR*TTVRHRELMSSWTE
Trigger: CTCAGTCCAAGAGGACATCAACTCCCTGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS-3UTR CAA 90 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGGGGAGGCTAGGCGTTTaGGCAGGTCTGATGTGCTGG +
Preference number: 5 (lower is better)
Translates to: RTQPSDPQGLAGLLHVRLGRLGV*AGLMCW
Trigger: CCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCC...CAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS GCA 90 bp TGGTGGGCTACTGGGAGCAGGCGAGCAGGTGTGAGGGAGGTTTCCTaGACCGCTCTTGTCAGTTGCAGAATGCGCTTCACTGGAGTCAAC +
Preference number: 5 (lower is better)
Translates to: WWATGSRRAGVREVS*TALVSCRMRFTGVN
Trigger: GTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTGCTCCCAGTAGCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 90 bp AATGATGGTCTCAGTGCCTACTTCCAGCCTGCCCACAGAGTCCCATaGGAGCTGTATGCGCTCCATCAGCCGTTGCACCACCGTCAGGCA +
Preference number: 5 (lower is better)
Translates to: NDGLSAYFQPAHRVP*ELYALHQPLHHRQA
Trigger: TGCCTGACGGTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGCAGGCTGGAAGTAGGCACTGAGACCATCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CCA 90 bp ACACACACTTTCGGGAGGCTAGGCGTTTTGGCAGGTCTGATGTGCTaGACACCAACTTGTCCAGGGGAGAGCCTGGAGCAGCATCCTGGG +
Preference number: 5 (lower is better)
Translates to: THTFGRLGVLAGLMC*TPTCPGESLEQHPG
Trigger: CCCAGGATGCTGCTCCAGGCTCTCCCCTGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCCGAAAGTGTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS TCA 90 bp GGCAGAGTGGTGGGACAGAAGCGAGGCCAGGCACCCGTACAGGGATaGGGTGTACATGTTCCCATTGTGAGTGGAGAGGTAAAGGGAAGC +
Preference number: 5 (lower is better)
Translates to: GRVVGQKRGQAPVQG*GVHVPIVSGEVKGS
Trigger: GCTTCCCTTTACCTCTCCACTCACAATGGGAACATGTACACCTCATCCCTGTACGGGTGCCTGGCCTCGCTTCTGTCCCACCACTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 90 bp GAGACACACACTTTCGGGAGGCTAGGCGTTTTGGCAGGTCTGATGTaGTGGACACCAACTTGTCCAGGGGAGAGCCTGGAGCAGCATCCT +
Preference number: 5 (lower is better)
Translates to: ETHTFGRLGVLAGLM*WTPTCPGESLEQHP
Trigger: AGGATGCTGCTCCAGGCTCTCCCCTGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCCGAAAGTGTGTGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGCACCGCTCTTGTCAGTaGCAGAATGCGCTTCACTGG +
Preference number: 5 (lower is better)
Translates to: RTQPSDPQGLAGLLHVRLHRSCQ*QNALHW
Trigger: CCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTG...CAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp AGGACCCAGCCCTCTGACCCACAAGGTCTAGCAGGCTTGCTGCATGTTAGGCTGGGCTGTAGAAAACCTTaGGTGGGCTACTGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: RTQPSDPQGLAGLLHVRLGCRKP*VGYWEQ
Trigger: CTGCTCCCAGTAGCCCACCAAAGGTTTTCTACAGCC...CAGCCTAACATGCAGCAAGCCTGCTAGACCTTGTGGGTCAGAGGGCTGGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS GCA 90 bp AGGCGAGCAGGTGTGAGGGAGGTTTCCTGCACCGCTCTTGTCAGTTaGAGAATGCGCTTCACTGGAGTCAACAGACGCTGCATCTCCAGA +
Preference number: 5 (lower is better)
Translates to: RRAGVREVSCTALVS*RMRFTGVNRRCISR
Trigger: TCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCTGCTCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 90 bp TTTGGTCCACATATTGGGCTGGGAAGTAGACCTCCAGGGCCAGGATaGCCACGTCCTTTGGCCAAGTATCTGTTTTGGCCAGGGGGACAG +
Preference number: 5 (lower is better)
Translates to: FGPHIGLGSRPPGPG*PRPLAKYLFWPGGQ
Trigger: CTGTCCCCCTGGCCAAAACAGATACTTGGCCAAAGGACGTGGGCATCCTGGCCCTGGAGGTCTACTTCCCAGCCCAATATGTGGACCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAGCGCTCCATCAGCCGTaGCACCACCGTCAGGCACAG +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQALHQP*HHRQAQ
Trigger: CTGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGC...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 90 bp GGAGGTTTCCTGCACCGCTCTTGTCAGTTGCAGAATGCGCTTCACTaGAGTCAACAGACGCTGCATCTCCAGAGGAGCAAGCAGAAACCC +
Preference number: 5 (lower is better)
Translates to: GGFLHRSCQLQNALH*SQQTLHLQRSKQKP
Trigger: GGGTTTCTGCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCGCGCTCCATCAGCCGTaGCACCACCGTCAGGCACAG +
Preference number: 5 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCALHQP*HHRQAQ
Trigger: CTGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGC...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTAGGGCCAGAGGGGCCTaGGGCCCAATCAGCATAGCC +
Preference number: 5 (lower is better)
Translates to: ACTFLESSDSGRGLLSIARARGA*GPISIA
Trigger: GGCTATGCTGATTGGGCCCAAGGCCCCTCTGGCCCT...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS TCA 90 bp TGCAAAAGGGTGTATGAAAGATCATGTACTGTAAATCGTCAAGGGTaGAGGGTCGATCGCTGCCAGCTCGCTCCAGGGCCAGAGGGGCCT +
Preference number: 5 (lower is better)
Translates to: CKRVYERSCTVNRQG*RVDRCQLAPGPEGP
Trigger: AGGCCCCTCTGGCCCTGGAGCGAGCTGGCAGCGATCGACCCTTCACCCTTGACGATTTACAGTACATGATCTTTCATACACCCTTTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000476640.1
CDS CCA 90 bp AGAAACTTGCTGCTAAACCAGAGCCATAAGAGAAGGCACCAATCCTaGAGCCAGCCAGTTCTTGGGCAGAGTGGTGGGACAGAAGCGAGG +
Preference number: 5 (lower is better)
Translates to: RNLLLNQSHKRRHQS*SQPVLGQSGGTEAR
Trigger: CCTCGCTTCTGTCCCACCACTCTGCCCAAGAACTGGCTGGCTCCAGGATTGGTGCCTTCTCTTATGGCTCTGGTTTAGCAGCAAGTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 90 bp CTTTCGGCGATGCTGCTCGTCCACTCGCTCCAGGTACCAAGTACCTaGGAAAAGGCTGTTTGTGTCACCAGGTGGGGAGAAATTCACCTT +
Preference number: 5 (lower is better)
Translates to: LSAMLLVHSLQVPST*EKAVCVTRWGEIHL
Trigger: AAGGTGAATTTCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAGGTACTTGGTACCTGGAGCGAGTGGACGAGCAGCATCGCCGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCGGAGCCAGCCAGTTCTaGGGCAGAGTGGTGGGACAG +
Preference number: 5 (lower is better)
Translates to: HCSILLFHKGPLVHSTISGASQF*GRVVGQ
Trigger: CTGTCCCACCACTCTGCCCAAGAACTGGCTGGCTCC...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 90 bp GCTCTTGTCAGTTGCAGAATGCGCTTCACTGGAGTCAACAGACGCTaGATCTCCAGAGGAGCAAGCAGAAACCCAGCAGTTCAGAAACCC +
Preference number: 5 (lower is better)
Translates to: ALVSCRMRFTGVNRR*ISRGASRNPAVQKP
Trigger: GGGTTTCTGAACTGCTGGGTTTCTGCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGACTTCTCCAGGTCAGTTaGGTCCACATATTGGGCTGG +
Preference number: 5 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGLLQVS*VHILGW
Trigger: CCAGCCCAATATGTGGACCAAACTGACCTGGAGAAG...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGAGCTTCCCATCCACTATaGGGTACTCCGAGGCCAAAT +
Preference number: 5 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGASHPL*GTPRPN
Trigger: ATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGC...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCGGGAGGCTAGGCGTTTaGGCAGGTCTGATGTGCTGG +
Preference number: 5 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFGRLGV*AGLMCW
Trigger: CCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCC...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAACACCGCTCTTGTCAGTaGCAGAATGCGCTTCACTGG +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQHRSCQ*QNALHW
Trigger: CCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTG...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCGGCCAAGTATCTGTTTaGGCCAGGGGGACAGCAGAG +
Preference number: 5 (lower is better)
Translates to: HCSILLFHKGPLVHSTISGQVSV*ARGTAE
Trigger: CTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGCC...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GCATGGAGAGGAATGAAGGGCCCGCTAGAGATGGCTCCTCACTCTACAGGGCTGTTTCCTGCTTCCACATaGTTATACTTCTCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: AWRGMKGPLEMAPHSTGLFPAST*LYFSRS
Trigger: TGACCTGGAGAAGTATAACAATGTGGAAGCAGGAAA...CAGCCCTGTAGAGTGAGGAGCCATCTCTAGCGGGCCCTTCATTCCTCTCCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAGTCAGGCACAGGGAGTaGATGTCCTCTTGGACTGAG +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQVRHRE*MSSWTE
Trigger: CTCAGTCCAAGAGGACATCAACTCCCTGTGCCTGAC...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCGGAGCCAGCCAGTTCTaGGGCAGAGTGGTGGGACAG +
Preference number: 5 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLGASQF*GRVVGQ
Trigger: CTGTCCCACCACTCTGCCCAAGAACTGGCTGGCTCC...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS CCA 90 bp CCAGGCACCCGTACAGGGATGAGGTGTACATGTTCCCATTGTGAGTaGAGAGGTAAAGGGAAGCCTTGGTTTTCTTGTCGAACATGTCCT +
Preference number: 5 (lower is better)
Translates to: PGTRTGMRCTCSHCE*RGKGKPWFSCRTCP
Trigger: AGGACATGTTCGACAAGAAAACCAAGGCTTCCCTTTACCTCTCCACTCACAATGGGAACATGTACACCTCATCCCTGTACGGGTGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS-3UTR CAA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCGTCAGGCACAGGGAGTaGATGTCCTCTTGGACTGAG +
Preference number: 5 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCVRHRE*MSSWTE
Trigger: CTCAGTCCAAGAGGACATCAACTCCCTGTGCCTGAC...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATCCAGTTGGCAGCATaGAAGAGGGAGGCAGTACCA +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQIQLAA*KREAVP
Trigger: TGGTACTGCCTCCCTCTTCAATGCTGCCAACTGGAT...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAATCGATCGCTGCCAGCTaGCTTCCACTGATTCTGGAT +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQSIAAS*LPLILD
Trigger: ATCCAGAATCAGTGGAAGCAAGCTGGCAGCGATCGA...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCTGGGAAAAGGCTGTTaGTGTCACCAGGTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: HCSILLFHKGPLVHSTISLGKGC*CHQVGR
Trigger: TCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAG...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGAGAGGTCTTCTCTCCATaGCTCCATCTTGCTCTTTCA +
Preference number: 5 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGEVFSP*LHLALS
Trigger: TGAAAGAGCAAGATGGAGCAATGGAGAGAAGACCTC...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS CCA 90 bp GGTATGATGTGTAACATCGATCCAAGGCCCGCAAGTAGCACTGGATaGAAAGCTTCCCATCCACTATTGGGTACTCCGAGGCCAAATTTG +
Preference number: 5 (lower is better)
Translates to: GMMCNIDPRPASSTG*KASHPLLGTPRPNL
Trigger: CAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGCGGGCCTTGGATCGATGTTACACATCATACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS-3UTR CAA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTTTTCCTGCACCGCTCTaGTCAGTTGCAGAATGCGCT +
Preference number: 5 (lower is better)
Translates to: GSSLYRADAYGATMSIQIFPAPL*SVAECA
Trigger: AGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAA...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTGGCCAAGTATCTGTTTaGGCCAGGGGGACAGCAGAG +
Preference number: 5 (lower is better)
Translates to: VRLGLYSGFQETQESFPLGQVSV*ARGTAE
Trigger: CTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGCC...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTGGATGCCCACGTCCTTaGGCCAAGTATCTGTTTTGG +
Preference number: 5 (lower is better)
Translates to: GSSLYRADAYGATMSIQIGCPRP*AKYLFW
Trigger: CCAAAACAGATACTTGGCCAAAGGACGTGGGCATCC...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCTTCTCCAGGTCAGTTaGGTCCACATATTGGGCTGG +
Preference number: 5 (lower is better)
Translates to: ACTFLESSDSGRGLLSIALLQVS*VHILGW
Trigger: CCAGCCCAATATGTGGACCAAACTGACCTGGAGAAG...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TGTCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGTTGACAGCTTTGGACTaGTCAATGATGGTCTCAGTG +
Preference number: 5 (lower is better)
Translates to: CLLLSVYVVSLEQGSGLGLTALD*SMMVSV
Trigger: CACTGAGACCATCATTGACAAGTCCAAAGCTGTCAA...CCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp TCTGCTGCTCTCTGTCTATGTGGTGTCTTTAGAACAGGGAAGTGGGCTGGGGGATCCATGAGCACTGTTTaGACAGCTTTGGACTTGTCA +
Preference number: 5 (lower is better)
Translates to: SAALCLCGVFRTGKWAGGSMSTV*TALDLS
Trigger: TGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGA...TCCCCCAGCCCACTTCCCTGTTCTAAAGACACCACATAGACAGAGAGCAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCGCTTCCCATCCACTATaGGGTACTCCGAGGCCAAAT +
Preference number: 5 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCASHPL*GTPRPN
Trigger: ATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGC...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATCGATCGCTGCCAGCTaGCTTCCACTGATTCTGGAT +
Preference number: 5 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPSIAAS*LPLILD
Trigger: ATCCAGAATCAGTGGAAGCAAGCTGGCAGCGATCGA...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTGCTGACAGGAAGTCATaGAACATCAGGCGAGCCAGA +
Preference number: 5 (lower is better)
Translates to: GSSLYRADAYGATMSIQIADRKS*NIRRAR
Trigger: TCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAGC...AATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCCAAGGTCTAGCAGGCTaGCTGCATGTTAGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: GWVCILGSKKRRNHFLFLQGLAG*LHVRLG
Trigger: ACCCAGCCTAACATGCAGCAAGCCTGCTAGACCTTG...GAGAAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCAGTTTGGTCCACATATaGGGCTGGGAAGTAGACCTC +
Preference number: 5 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLSLVHI*GWEVDL
Trigger: GAGGTCTACTTCCCAGCCCAATATGTGGACCAAACT...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCAGTTTGGTCCACATATaGGGCTGGGAAGTAGACCTC +
Preference number: 5 (lower is better)
Translates to: HCSILLFHKGPLVHSTISSLVHI*GWEVDL
Trigger: GAGGTCTACTTCCCAGCCCAATATGTGGACCAAACT...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTCTGGGAAAAGGCTGTTaGTGTCACCAGGTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: VRLGLYSGFQETQESFPLLGKGC*CHQVGR
Trigger: TCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAG...AAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS TCA 90 bp ATCAGGCGAGCCAGAGACTTCTGGACCATCTTGCAAAAGGGTGTATaGAAGATCATGTACTGTAAATCGTCAAGGGTGAAGGGTCGATCG +
Preference number: 5 (lower is better)
Translates to: IRRARDFWTILQKGV*KIMYCKSSRVKGRS
Trigger: CGATCGACCCTTCACCCTTGACGATTTACAGTACATGATCTTTCATACACCCTTTTGCAAGATGGTCCAGAAGTCTCTGGCTCGCCTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000476640.1
ENST00000544913.2
CDS CCA 90 bp CAAGGCCCGCAAGTAGCACTGGATGGAAAGCTTCCCATCCACTATTaGGTACTCCGAGGCCAAATTTGGTTTGTAGAAGTCATACACATT +
Preference number: 5 (lower is better)
Translates to: QGPQVALDGKLPIHY*VLRGQIWFVEVIHI
Trigger: AATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGCGGGCCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS-3UTR CAA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTTCCTGCACCGCTCTaGTCAGTTGCAGAATGCGCT +
Preference number: 5 (lower is better)
Translates to: SSLYRADAYGATMSIQIHFPAPL*SVAECA
Trigger: AGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAA...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGGATGCCCACGTCCTTaGGCCAAGTATCTGTTTTGG +
Preference number: 5 (lower is better)
Translates to: SSLYRADAYGATMSIQIHGCPRP*AKYLFW
Trigger: CCAAAACAGATACTTGGCCAAAGGACGTGGGCATCC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATGGCTCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAATCCATGAGCACTGTTTaGACAGCTTTGGACTTGTCA +
Preference number: 5 (lower is better)
Translates to: DGSSLYRADAYGATMSIQSMSTV*TALDLS
Trigger: TGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGA...TTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGAGCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGCTGACAGGAAGTCATaGAACATCAGGCGAGCCAGA +
Preference number: 5 (lower is better)
Translates to: SSLYRADAYGATMSIQIHADRKS*NIRRAR
Trigger: TCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAGC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 90 bp GATGGAAAGCTTCCCATCCACTATTGGGTACTCCGAGGCCAAATTTaGTTTGTAGAAGTCATACACATTCTCCATATGGGTTCCCCTCAG +
Preference number: 5 (lower is better)
Translates to: DGKLPIHYWVLRGQI*FVEVIHILHMGSPQ
Trigger: CTGAGGGGAACCCATATGGAGAATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CCA 90 bp AGGTGTACATGTTCCCATTGTGAGTGGAGAGGTAAAGGGAAGCCTTaGTTTTCTTGTCGAACATGTCCTGAGAGGCCTTTAGAAGTGCTT +
Preference number: 5 (lower is better)
Translates to: RCTCSHCEWRGKGKP*FSCRTCPERPLEVL
Trigger: AAGCACTTCTAAAGGCCTCTCAGGACATGTTCGACAAGAAAACCAAGGCTTCCCTTTACCTCTCCACTCACAATGGGAACATGTACACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS-3UTR CAA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCTTGACAGCTTTGGACTaGTCAATGATGGTCTCAGTG +
Preference number: 5 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCLTALD*SMMVSV
Trigger: CACTGAGACCATCATTGACAAGTCCAAAGCTGTCAA...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GCAGGCTTGCTGCATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAAATGAAAAGAAACTaGCTGCTAAACCAGAGCCAT +
Preference number: 5 (lower is better)
Translates to: AGLLHVRLGLYSGFQETQEMKRN*LLNQSH
Trigger: ATGGCTCTGGTTTAGCAGCAAGTTTCTTTTCATTTC...CTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACATGCAGCAAGCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS TCA 90 bp TGCAAAAGGGTGTATGAAAGATCATGTACTGTAAATCGTCAAGGGTaGAGGGTCGATCGCTGCCAGCTTGCTTCCACTGATTCTGGATTT +
Preference number: 5 (lower is better)
Translates to: CKRVYERSCTVNRQG*RVDRCQLASTDSGF
Trigger: AAATCCAGAATCAGTGGAAGCAAGCTGGCAGCGATCGACCCTTCACCCTTGACGATTTACAGTACATGATCTTTCATACACCCTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CCA 90 bp TTTGTAGAAGTCATACACATTCTCCATATGGGTTCCCCTCAGCCCTaGAAAGGCACACAAAGTGTTTCAGAGACTACACAATGCAGCCTA +
Preference number: 5 (lower is better)
Translates to: FVEVIHILHMGSPQP*KGTQSVSETTQCSL
Trigger: TAGGCTGCATTGTGTAGTCTCTGAAACACTTTGTGTGCCTTTCCAGGGCTGAGGGGAACCCATATGGAGAATGTGTATGACTTCTACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5
CDS-3UTR CAA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTTCCTGCTTCCACATaGTTATACTTCTCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPFPAST*LYFSRS
Trigger: TGACCTGGAGAAGTATAACAATGTGGAAGCAGGAAA...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCAACTGTTTTGACAGCTTaGGACTTGTCAATGATGGTC +
Preference number: 5 (lower is better)
Translates to: DLHAHFWSPVIQEEVFSPTVLTA*DLSMMV
Trigger: GACCATCATTGACAAGTCCAAAGCTGTCAAAACAGT...TGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAATCCAGTTGGCAGCATaGAAGAGGGAGGCAGTACCA +
Preference number: 5 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGIQLAA*KREAVP
Trigger: TGGTACTGCCTCCCTCTTCAATGCTGCCAACTGGAT...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCACTCCGAGGCCAAATTaGGTTTGTAGAAGTCATACA +
Preference number: 5 (lower is better)
Translates to: HCSILLFHKGPLVHSTISTPRPN*VCRSHT
Trigger: TGTATGACTTCTACAAACCAAATTTGGCCTCGGAGT...GCTTATGGTGCTATGGACTAGGGGTCCTTTGTGAAAGAGCAAGATGGAGCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp ACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCACTCCGAGGCCAAATTaGGTTTGTAGAAGTCATACA +
Preference number: 5 (lower is better)
Translates to: TADLHAHFWSPVIQEEVFTPRPN*VCRSHT
Trigger: TGTATGACTTCTACAAACCAAATTTGGCCTCGGAGT...GAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGCAGATCAGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCTTTCTCCATTGCTCCATCTaGCTCTTTCACAAAGGACCC +
Preference number: 5 (lower is better)
Translates to: LGWVCILGSKKRRNHFLFLHCSI*LFHKGP
Trigger: GGGTCCTTTGTGAAAGAGCAAGATGGAGCAATGGAG...AAAGAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS-3UTR CAA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATGAGGTCTTCTCTCCATaGCTCCATCTTGCTCTTTCA +
Preference number: 5 (lower is better)
Translates to: SSLYRADAYGATMSIQIHEVFSP*LHLALS
Trigger: TGAAAGAGCAAGATGGAGCAATGGAGAGAAGACCTC...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCAAGTTTATCTGGATCTaGAAGGCAACAGCTGATCTG +
Preference number: 5 (lower is better)
Translates to: FLESSDSGRGLLSIAPSCKFIWI*KATADL
Trigger: CAGATCAGCTGTTGCCTTCAAGATCCAGATAAACTT...GCAAGATGGAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 90 bp GCATTGGTGGTATCTATGCCCTCAATATCAGTATTGCCTGAATCCTaGAAGAGTTCCATGAGCACTGTTTTGACAGCTTTGGACTTGTCA +
Preference number: 5 (lower is better)
Translates to: ALVVSMPSISVLPES*KSSMSTVLTALDLS
Trigger: TGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGAACTCTTCCAGGATTCAGGCAATACTGATATTGAGGGCATAGATACCACCAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS-3UTR CAA 90 bp GCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTGAAATGAAAAGAAACTaGCTGCTAAACCAGAGCCAT +
Preference number: 5 (lower is better)
Translates to: ACTFLESSDSGRGLLSIAEMKRN*LLNQSH
Trigger: ATGGCTCTGGTTTAGCAGCAAGTTTCTTTTCATTTC...AGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGACTCCATTGCTCCATCTaGCTCTTTCACAAAGGACCC +
Preference number: 5 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGLHCSI*LFHKGP
Trigger: GGGTCCTTTGTGAAAGAGCAAGATGGAGCAATGGAG...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp CATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCAACAAGGTACAAAATTaGGAGATTCACAGGAACAGC +
Preference number: 5 (lower is better)
Translates to: HAHFWSPVIQEEVFSPLLNKVQN*EIHRNS
Trigger: GCTGTTCCTGTGAATCTCCAAATTTTGTACCTTGTT...GAGCAATGGAGAGAAGACCTCTTCCTGAATCACTGGACTCCAGAAATGTGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp GTTCAAATAACAGCGGCAAGGAATGACCAAGAAGATCTGAACTACAGCTCCTGCTTCTACCGTTCTTATTaGCCTTGTACCTGTCATAGC +
Preference number: 5 (lower is better)
Translates to: VQITAARNDQEDLNYSSCFYRSY*PCTCHS
Trigger: GCTATGACAGGTACAAGGCAAATAAGAACGGTAGAA...GCAGGAGCTGTAGTTCAGATCTTCTTGGTCATTCCTTGCCGCTGTTATTTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS TCA 90 bp AATTCACCTTATGGTAGAATTGCTCTCTTTGGTTCATTATTTCTGTaGACTCCTCAGGAGACACACACTTTCGGGAGGCTAGGCGTTTTG +
Preference number: 5 (lower is better)
Translates to: NSPYGRIALFGSLFL*TPQETHTFGRLGVL
Trigger: CAAAACGCCTAGCCTCCCGAAAGTGTGTGTCTCCTGAGGAGTTCACAGAAATAATGAACCAAAGAGAGCAATTCTACCATAAGGTGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS TCA 90 bp GTGTTTCAGAGACTACACAATGCAGCCTACCTTGAGCACAAAAGATaGGAGAACCATATAAAGGAGGTTTCTGGTCATTATCTGTGTCCC +
Preference number: 5 (lower is better)
Translates to: VFQRLHNAAYLEHKR*ENHIKEVSGHYLCP
Trigger: GGGACACAGATAATGACCAGAAACCTCCTTTATATGGTTCTCTCATCTTTTGTGCTCAAGGTAGGCTGCATTGTGTAGTCTCTGAAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5
CDS-3UTR CAA 90 bp ATGTTAGGCTGGGTTTGTATTCTGGGTTCCAAGAAACGCAGGAATCATTTCCTCACTGTTTTGACAGCTTaGGACTTGTCAATGATGGTC +
Preference number: 5 (lower is better)
Translates to: MLGWVCILGSKKRRNHFLTVLTA*DLSMMV
Trigger: GACCATCATTGACAAGTCCAAAGCTGTCAAAACAGT...GAGGAAATGATTCCTGCGTTTCTTGGAACCCAGAATACAAACCCAGCCTAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS TCA 90 bp AAAGGCACACAAAGTGTTTCAGAGACTACACAATGCAGCCTACCTTaGGCACAAAAGATGAGAGAACCATATAAAGGAGGTTTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: KGTQSVSETTQCSLP*AQKMREPYKGGFWS
Trigger: TGACCAGAAACCTCCTTTATATGGTTCTCTCATCTTTTGTGCTCAAGGTAGGCTGCATTGTGTAGTCTCTGAAACACTTTGTGTGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5
CDS-3UTR CAA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGACCCTCAATATCAGTATaGCCTGAATCCTGGAAGAGT +
Preference number: 5 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGPSISV*PESWKS
Trigger: ACTCTTCCAGGATTCAGGCAATACTGATATTGAGGG...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp AGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAAGTTTATCTGGATCTaGAAGGCAACAGCTGATCTG +
Preference number: 5 (lower is better)
Translates to: RADAYGATMSIQIHLPAKKFIWI*KATADL
Trigger: CAGATCAGCTGTTGCCTTCAAGATCCAGATAAACTT...CTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp TCCTCACTCTACAGGGCTGATGCTTATGGGGCTACTATGTCGATTCAAATTCATAACAAGGTACAAAATTaGGAGATTCACAGGAACAGC +
Preference number: 5 (lower is better)
Translates to: SSLYRADAYGATMSIQIHNKVQN*EIHRNS
Trigger: GCTGTTCCTGTGAATCTCCAAATTTTGTACCTTGTT...ATGAATTTGAATCGACATAGTAGCCCCATAAGCATCAGCCCTGTAGAGTGAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS-3UTR CAA 90 bp ATGCTTATGGGGCTACTATGTCGATTCAAATTCATTTACCAGCTAAGAGTGGGAATAGAAGGCAAAAACTaGTTAACCTTTGCGCTGTGT +
Preference number: 5 (lower is better)
Translates to: MLMGLLCRFKFIYQLRVGIEGKN*LTFALC
Trigger: ACACAGCGCAAAGGTTAACAAGTTTTTGCCTTCTAT...TCCCACTCTTAGCTGGTAAATGAATTTGAATCGACATAGTAGCCCCATAAGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000369406.8
CDS GCA 72 bp CTTCCAGCCTGCCCACAGAGTCCCATGGGAGCTGTATaGGCTCCATCAGCCGTTGCACCACCGTCAGGCACA +
Preference number: 6 (lower is better)
Translates to: LPACPQSPMGAV*APSAVAPPSGT
Trigger: TGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGCAGGCTGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CCA 72 bp CTCAGTGCCTACTTCCAGCCTGCCCACAGAGTCCCATaGGAGCTGTATGCGCTCCATCAGCCGTTGCACCAC +
Preference number: 6 (lower is better)
Translates to: LSAYFQPAHRVP*ELYALHQPLHH
Trigger: GTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTCTGTGGGCAGGCTGGAAGTAGGCACTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CCA 72 bp CAGCTCCGGCCCCACCTGTGGGACGAGCATTACCACTaGGATAGACGGCAATGTCTCCACAGACCACCATGG +
Preference number: 6 (lower is better)
Translates to: QLRPHLWDEHYH*DRRQCLHRPPW
Trigger: CCATGGTGGTCTGTGGAGACATTGCCGTCTATCCCAGTGGTAATGCTCGTCCCACAGGTGGGGCCGGAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000476640.1
CDS TCA 72 bp ACCTTTGGTGGGCTACTGGGAGCAGGCGAGCAGGTGTaGGGGAGGTTTCCTGCACCGCTCTTGTCAGTTGCA +
Preference number: 6 (lower is better)
Translates to: TFGGLLGAGEQV*GRFPAPLLSVA
Trigger: TGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTGCTCCCAGTAGCCCACCAAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 72 bp GAGTCCCATGGGAGCTGTATGCGCTCCATCAGCCGTTaGACCACCGTCAGGCACAGGGAGTTGATGTCCTCT +
Preference number: 6 (lower is better)
Translates to: ESHGSCMRSISR*TTVRHRELMSS
Trigger: AGAGGACATCAACTCCCTGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 72 bp AGAGTCCCATGGGAGCTGTATGCGCTCCATCAGCCGTaGCACCACCGTCAGGCACAGGGAGTTGATGTCCTC +
Preference number: 6 (lower is better)
Translates to: RVPWELYALHQP*HHRQAQGVDVL
Trigger: GAGGACATCAACTCCCTGTGCCTGACGGTGGTGCAACGGCTGATGGAGCGCATACAGCTCCCATGGGACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 90 bp CAGGCGAGCAGGTGTGAGGGAGGTTTCCTGCACCGCTCTTGTCAGTaGCAGAATGCGCTTCACTGGAGTCAACAGACGCTGCATCTCCAG +
Preference number: 6 (lower is better)
Translates to: QASRCEGGFLHRSCQ*QNALHWSQQTLHLQ
Trigger: CTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCTGCTCGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 90 bp ACCTCCAGGGCCAGGATGCCCACGTCCTTTGGCCAAGTATCTGTTTaGGCCAGGGGGACAGCAGAGGCTGTAGAAAACCTTTGGTGGGCT +
Preference number: 6 (lower is better)
Translates to: TSRARMPTSFGQVSV*ARGTAEAVENLWWA
Trigger: AGCCCACCAAAGGTTTTCTACAGCCTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGCCAAAGGACGTGGGCATCCTGGCCCTGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 72 bp ACTTTCGGGAGGCTAGGCGTTTTGGCAGGTCTGATGTaGTGGACACCAACTTGTCCAGGGGAGAGCCTGGAG +
Preference number: 6 (lower is better)
Translates to: TFGRLGVLAGLM*WTPTCPGESLE
Trigger: CTCCAGGCTCTCCCCTGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCCGAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS TCA 72 bp GTGGGACAGAAGCGAGGCCAGGCACCCGTACAGGGATaGGGTGTACATGTTCCCATTGTGAGTGGAGAGGTA +
Preference number: 6 (lower is better)
Translates to: VGQKRGQAPVQG*GVHVPIVSGEV
Trigger: TACCTCTCCACTCACAATGGGAACATGTACACCTCATCCCTGTACGGGTGCCTGGCCTCGCTTCTGTCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 72 bp GGTGTGAGGGAGGTTTCCTGCACCGCTCTTGTCAGTTaGAGAATGCGCTTCACTGGAGTCAACAGACGCTGC +
Preference number: 6 (lower is better)
Translates to: GVREVSCTALVS*RMRFTGVNRRC
Trigger: GCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS GCA 72 bp GGGAGGTTTCCTGCACCGCTCTTGTCAGTTGCAGAATaGGCTTCACTGGAGTCAACAGACGCTGCATCTCCA +
Preference number: 6 (lower is better)
Translates to: GRFPAPLLSVAE*ASLESTDAASP
Trigger: TGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 72 bp CTGCACCGCTCTTGTCAGTTGCAGAATGCGCTTCACTaGAGTCAACAGACGCTGCATCTCCAGAGGAGCAAG +
Preference number: 6 (lower is better)
Translates to: LHRSCQLQNALH*SQQTLHLQRSK
Trigger: CTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 72 bp ATACTTCTCCAGGTCAGTTTGGTCCACATATTGGGCTaGGAAGTAGACCTCCAGGGCCAGGATGCCCACGTC +
Preference number: 6 (lower is better)
Translates to: ILLQVSLVHILG*EVDLQGQDAHV
Trigger: GACGTGGGCATCCTGGCCCTGGAGGTCTACTTCCCAGCCCAATATGTGGACCAAACTGACCTGGAGAAGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CCA 72 bp ATGCTGCTCGTCCACTCGCTCCAGGTACCAAGTACCTaGGAAAAGGCTGTTTGTGTCACCAGGTGGGGAGAA +
Preference number: 6 (lower is better)
Translates to: MLLVHSLQVPST*EKAVCVTRWGE
Trigger: TTCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAGGTACTTGGTACCTGGAGCGAGTGGACGAGCAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 72 bp AGCTCTGCTAGCATACGTTTCCCAGGAAGCTTTCCATaGATCTGCAGAACACCTTTAGACGGGACGCCGGGC +
Preference number: 6 (lower is better)
Translates to: SSASIRFPGSFP*ICRTPLDGTPG
Trigger: GCCCGGCGTCCCGTCTAAAGGTGTTCTGCAGATCCATGGAAAGCTTCCTGGGAAACGTATGCTAGCAGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 72 bp AGGTGTGAGGGAGGTTTCCTGCACCGCTCTTGTCAGTaGCAGAATGCGCTTCACTGGAGTCAACAGACGCTG +
Preference number: 6 (lower is better)
Translates to: RCEGGFLHRSCQ*QNALHWSQQTL
Trigger: CAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACTGACAAGAGCGGTGCAGGAAACCTCCCTCACACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 72 bp GCCAGGATGCCCACGTCCTTTGGCCAAGTATCTGTTTaGGCCAGGGGGACAGCAGAGGCTGTAGAAAACCTT +
Preference number: 6 (lower is better)
Translates to: ARMPTSFGQVSV*ARGTAEAVENL
Trigger: AAGGTTTTCTACAGCCTCTGCTGTCCCCCTGGCCAAAACAGATACTTGGCCAAAGGACGTGGGCATCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 72 bp CCTCAGGAGACACACACTTTCGGGAGGCTAGGCGTTTaGGCAGGTCTGATGTGCTGGACACCAACTTGTCCA +
Preference number: 6 (lower is better)
Translates to: PQETHTFGRLGV*AGLMCWTPTCP
Trigger: TGGACAAGTTGGTGTCCAGCACATCAGACCTGCCAAAACGCCTAGCCTCCCGAAAGTGTGTGTCTCCTGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS TCA 72 bp GTGTATGAAAGATCATGTACTGTAAATCGTCAAGGGTaGAGGGTCGATCGCTGCCAGCTCGCTCCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: VYERSCTVNRQG*RVDRCQLAPGP
Trigger: TGGCCCTGGAGCGAGCTGGCAGCGATCGACCCTTCACCCTTGACGATTTACAGTACATGATCTTTCATACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476640.1
CDS GCA 72 bp AGTTGCAGAATGCGCTTCACTGGAGTCAACAGACGCTaGATCTCCAGAGGAGCAAGCAGAAACCCAGCAGTT +
Preference number: 6 (lower is better)
Translates to: SCRMRFTGVNRR*ISRGASRNPAV
Trigger: AACTGCTGGGTTTCTGCTTGCTCCTCTGGAGATGCAGCGTCTGTTGACTCCAGTGAAGCGCATTCTGCAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 72 bp TGTAACATCGATCCAAGGCCCGCAAGTAGCACTGGATaGAAAGCTTCCCATCCACTATTGGGTACTCCGAGG +
Preference number: 6 (lower is better)
Translates to: CNIDPRPASSTG*KASHPLLGTPR
Trigger: CCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGCGGGCCTTGGATCGATGTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CAA 72 bp CTGGTTTGTGTGTCACTGCTGGCTGACAGGAAGTCATaGAACATCAGGCGAGCCAGAGACTTCTGGACCATC +
Preference number: 6 (lower is better)
Translates to: LVCVSLLADRKS*NIRRARDFWTI
Trigger: GATGGTCCAGAAGTCTCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAGCCAGCAGTGACACACAAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000476640.1
ENST00000544913.2
CDS CAA 90 bp GCTCGTCCACTCGCTCCAGGTACCAAGTACCTGGGAAAAGGCTGTTaGTGTCACCAGGTGGGGAGAAATTCACCTTATGGTAGAATTGCT +
Preference number: 6 (lower is better)
Translates to: ARPLAPGTKYLGKGC*CHQVGRNSPYGRIA
Trigger: AGCAATTCTACCATAAGGTGAATTTCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAGGTACTTGGTACCTGGAGCGAGTGGACGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 72 bp ATTGTTATACTTCTCCAGGTCAGTTTGGTCCACATATaGGGCTGGGAAGTAGACCTCCAGGGCCAGGATGCC +
Preference number: 6 (lower is better)
Translates to: IVILLQVSLVHI*GWEVDLQGQDA
Trigger: GGCATCCTGGCCCTGGAGGTCTACTTCCCAGCCCAATATGTGGACCAAACTGACCTGGAGAAGTATAACAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 72 bp CTCGCTCCAGGTACCAAGTACCTGGGAAAAGGCTGTTaGTGTCACCAGGTGGGGAGAAATTCACCTTATGGT +
Preference number: 6 (lower is better)
Translates to: LAPGTKYLGKGC*CHQVGRNSPYG
Trigger: ACCATAAGGTGAATTTCTCCCCACCTGGTGACACAAACAGCCTTTTCCCAGGTACTTGGTACCTGGAGCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CAA 90 bp GAATCCTGGAAGAGTTCCATGAGCACTGTTTTGACAGCTTTGGACTaGTCAATGATGGTCTCAGTGCCTACTTCCAGCCTGCCCACAGAG +
Preference number: 6 (lower is better)
Translates to: ESWKSSMSTVLTALD*SMMVSVPTSSLPTE
Trigger: CTCTGTGGGCAGGCTGGAAGTAGGCACTGAGACCATCATTGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGAACTCTTCCAGGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 90 bp TTGCCTGAATCCTGGAAGAGTTCCATGAGCACTGTTTTGACAGCTTaGGACTTGTCAATGATGGTCTCAGTGCCTACTTCCAGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: LPESWKSSMSTVLTA*DLSMMVSVPTSSLP
Trigger: GGGCAGGCTGGAAGTAGGCACTGAGACCATCATTGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGAACTCTTCCAGGATTCAGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 90 bp CCAAGGCCCGCAAGTAGCACTGGATGGAAAGCTTCCCATCCACTATaGGGTACTCCGAGGCCAAATTTGGTTTGTAGAAGTCATACACAT +
Preference number: 6 (lower is better)
Translates to: PRPASSTGWKASHPL*GTPRPNLVCRSHTH
Trigger: ATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGCGGGCCTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS GCA 72 bp AGGCAGTACCACCGTAGCAGGCATTGGTGGTATCTATaGCCTCAATATCAGTATTGCCTGAATCCTGGAAGA +
Preference number: 6 (lower is better)
Translates to: RQYHRSRHWWYL*PQYQYCLNPGR
Trigger: TCTTCCAGGATTCAGGCAATACTGATATTGAGGGCATAGATACCACCAATGCCTGCTACGGTGGTACTGCCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 72 bp TCCTGCTTCCACATTGTTATACTTCTCCAGGTCAGTTaGGTCCACATATTGGGCTGGGAAGTAGACCTCCAG +
Preference number: 6 (lower is better)
Translates to: SCFHIVILLQVS*VHILGWEVDLQ
Trigger: CTGGAGGTCTACTTCCCAGCCCAATATGTGGACCAAACTGACCTGGAGAAGTATAACAATGTGGAAGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 90 bp GGATGGAAAGCTTCCCATCCACTATTGGGTACTCCGAGGCCAAATTaGGTTTGTAGAAGTCATACACATTCTCCATATGGGTTCCCCTCA +
Preference number: 6 (lower is better)
Translates to: GWKASHPLLGTPRPN*VCRSHTHSPYGFPS
Trigger: TGAGGGGAACCCATATGGAGAATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CAA 90 bp TTATATAAGCTGGTTTGTGTGTCACTGCTGGCTGACAGGAAGTCATaGAACATCAGGCGAGCCAGAGACTTCTGGACCATCTTGCAAAAG +
Preference number: 6 (lower is better)
Translates to: LYKLVCVSLLADRKS*NIRRARDFWTILQK
Trigger: CTTTTGCAAGATGGTCCAGAAGTCTCTGGCTCGCCTGATGTTCAATGACTTCCTGTCAGCCAGCAGTGACACACAAACCAGCTTATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000476640.1
ENST00000544913.2
CDS TCA 72 bp GTGTATGAAAGATCATGTACTGTAAATCGTCAAGGGTaGAGGGTCGATCGCTGCCAGCTTGCTTCCACTGAT +
Preference number: 6 (lower is better)
Translates to: VYERSCTVNRQG*RVDRCQLASTD
Trigger: ATCAGTGGAAGCAAGCTGGCAGCGATCGACCCTTCACCCTTGACGATTTACAGTACATGATCTTTCATACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CCA 72 bp CAAGTAGCACTGGATGGAAAGCTTCCCATCCACTATTaGGTACTCCGAGGCCAAATTTGGTTTGTAGAAGTC +
Preference number: 6 (lower is better)
Translates to: QVALDGKLPIHY*VLRGQIWFVEV
Trigger: GACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CCA 72 bp GTCATACACATTCTCCATATGGGTTCCCCTCAGCCCTaGAAAGGCACACAAAGTGTTTCAGAGACTACACAA +
Preference number: 6 (lower is better)
Translates to: VIHILHMGSPQP*KGTQSVSETTQ
Trigger: TTGTGTAGTCTCTGAAACACTTTGTGTGCCTTTCCAGGGCTGAGGGGAACCCATATGGAGAATGTGTATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5
CDS CAA 72 bp TCCTGGAAGAGTTCCATGAGCACTGTTTTGACAGCTTaGGACTTGTCAATGATGGTCTCAGTGCCTACTTCC +
Preference number: 6 (lower is better)
Translates to: SWKSSMSTVLTA*DLSMMVSVPTS
Trigger: GGAAGTAGGCACTGAGACCATCATTGACAAGTCCAAAGCTGTCAAAACAGTGCTCATGGAACTCTTCCAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 72 bp GCAAGTAGCACTGGATGGAAAGCTTCCCATCCACTATaGGGTACTCCGAGGCCAAATTTGGTTTGTAGAAGT +
Preference number: 6 (lower is better)
Translates to: ASSTGWKASHPL*GTPRPNLVCRS
Trigger: ACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGCTTTCCATCCAGTGCTACTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CAA 72 bp CAGGCATTGGTGGTATCTATGCCCTCAATATCAGTATaGCCTGAATCCTGGAAGAGTTCCATGAGCACTGTT +
Preference number: 6 (lower is better)
Translates to: QALVVSMPSISV*PESWKSSMSTV
Trigger: AACAGTGCTCATGGAACTCTTCCAGGATTCAGGCAATACTGATATTGAGGGCATAGATACCACCAATGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS CAA 72 bp GCTTCCCATCCACTATTGGGTACTCCGAGGCCAAATTaGGTTTGTAGAAGTCATACACATTCTCCATATGGG +
Preference number: 6 (lower is better)
Translates to: ASHPLLGTPRPN*VCRSHTHSPYG
Trigger: CCCATATGGAGAATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS TCA 72 bp GCCAGAGACTTCTGGACCATCTTGCAAAAGGGTGTATaGAAGATCATGTACTGTAAATCGTCAAGGGTGAAG +
Preference number: 6 (lower is better)
Translates to: ARDFWTILQKGV*KIMYCKSSRVK
Trigger: CTTCACCCTTGACGATTTACAGTACATGATCTTTCATACACCCTTTTGCAAGATGGTCCAGAAGTCTCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000476640.1
ENST00000544913.2
CDS CCA 72 bp CTTCCCATCCACTATTGGGTACTCCGAGGCCAAATTTaGTTTGTAGAAGTCATACACATTCTCCATATGGGT +
Preference number: 6 (lower is better)
Translates to: LPIHYWVLRGQI*FVEVIHILHMG
Trigger: ACCCATATGGAGAATGTGTATGACTTCTACAAACCAAATTTGGCCTCGGAGTACCCAATAGTGGATGGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000472375.5
ENST00000544913.2
CDS CCA 72 bp GCACAAAAGATGAGAGAACCATATAAAGGAGGTTTCTaGTCATTATCTGTGTCCCATGCCCAAGTTCAAGCC +
Preference number: 6 (lower is better)
Translates to: AQKMREPYKGGF*SLSVSHAQVQA
Trigger: GGCTTGAACTTGGGCATGGGACACAGATAATGACCAGAAACCTCCTTTATATGGTTCTCTCATCTTTTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5
CDS TCA 72 bp TATGGTAGAATTGCTCTCTTTGGTTCATTATTTCTGTaGACTCCTCAGGAGACACACACTTTCGGGAGGCTA +
Preference number: 6 (lower is better)
Translates to: YGRIALFGSLFL*TPQETHTFGRL
Trigger: TAGCCTCCCGAAAGTGTGTGTCTCCTGAGGAGTTCACAGAAATAATGAACCAAAGAGAGCAATTCTACCATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000369406.8
ENST00000544913.2
CDS CCA 72 bp GTATCTATGCCCTCAATATCAGTATTGCCTGAATCCTaGAAGAGTTCCATGAGCACTGTTTTGACAGCTTTG +
Preference number: 6 (lower is better)
Translates to: VSMPSISVLPES*KSSMSTVLTAL
Trigger: CAAAGCTGTCAAAACAGTGCTCATGGAACTCTTCCAGGATTCAGGCAATACTGATATTGAGGGCATAGATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000369406.8
ENST00000476640.1
ENST00000544913.2
CDS TCA 72 bp AGACTACACAATGCAGCCTACCTTGAGCACAAAAGATaGGAGAACCATATAAAGGAGGTTTCTGGTCATTAT +
Preference number: 6 (lower is better)
Translates to: RLHNAAYLEHKR*ENHIKEVSGHY
Trigger: ATAATGACCAGAAACCTCCTTTATATGGTTCTCTCATCTTTTGTGCTCAAGGTAGGCTGCATTGTGTAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000472375.5