Pregenerated sensors for HMGB4 (Homo sapiens)
Ensembl gene IDs: ENSG00000176256Ensembl transcript IDs: ENST00000425537.1, ENST00000458277.1, ENST00000519684.5, ENST00000522796.1, ENST00000681531.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGGGTGCTTCTCCAGGTCTGTCGCTGTTGACCACATCTTCCCTGTaGCCTTGGCCACCTGCACCACCGACCAGTTCGGGTTCTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: KGASPGLSLLTTSSL*PWPPAPPTSSGSPS Trigger: AGAGGGAGAACCCGAACTGGTCGGTGGTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS TCA 90 bp | AGCCACTCTTTGCTCATAAGGGTGCTTCTCCAGGTCTGTCGCTGTTaGCCACATCTTCCCTGTGGCCTTGGCCACCTGCACCACCGACCA | + |
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Preference number: 5 (lower is better) Translates to: SHSLLIRVLLQVCRC*PHLPCGLGHLHHRP Trigger: TGGTCGGTGGTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTTATGAGCAAAGAGTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS GCA 90 bp | TTGCTTGACCTAAGCCTGTGCTTCATCCTGCCTGCACAGAGCTGTTaGCAGGGCACTGAGGGTCCAGATATGTGGTCTCAGCAGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: LLDLSLCFILPAQSC*QGTEGPDMWSQQLS Trigger: GCTCAGCTGCTGAGACCACATATCTGGACCCTCAGTGCCCTGGCAACAGCTCTGTGCAGGCAGGATGAAGCACAGGCTTAGGTCAAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 90 bp | CATAGTGGTCTTGGCAGAAGAGTAGGAAGGATGATGGAGGCCGTCTaGGTTCCTGGGGATCCCGCTTTCTCCGTTTCTTCCTCTTGCCAA | + |
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Preference number: 5 (lower is better) Translates to: HSGLGRRVGRMMEAV*VPGDPAFSVSSSCQ Trigger: TTGGCAAGAGGAAGAAACGGAGAAAGCGGGATCCCCAGGAACCCAGACGGCCTCCATCATCCTTCCTACTCTTCTGCCAAGACCACTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS TCA 90 bp | GCTGTTGCCAGGGCACTGAGGGTCCAGATATGTGGTCTCAGCAGCTaGGCCGGACAAGGAAACTTGCCTAAGACTAGACCATATTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: AVARALRVQICGLSS*AGQGNLPKTRPYFE Trigger: TTCAAAATATGGTCTAGTCTTAGGCAAGTTTCCTTGTCCGGCTCAGCTGCTGAGACCACATATCTGGACCCTCAGTGCCCTGGCAACAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS GCA 90 bp | GCCGTCTGGGTTCCTGGGGATCCCGCTTTCTCCGTTTCTTCCTCTTaGCAACATAATTCATCATTTCTTCCTGGTATCGGGCTTTGTCGA | + |
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Preference number: 5 (lower is better) Translates to: AVWVPGDPAFSVSSS*QHNSSFLPGIGLCR Trigger: TCGACAAAGCCCGATACCAGGAAGAAATGATGAATTATGTTGGCAAGAGGAAGAAACGGAGAAAGCGGGATCCCCAGGAACCCAGACGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS TCA 90 bp | CCATCAGCTCTGCCTGACTCTTTTCCCTCTGCACCGGTTTCTAGCTaGCATTCGGTACTTCTTCCTGGCATTACATTGTTTACGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: PSALPDSFPSAPVSS*HSVLLPGITLFTVE Trigger: CTCTACCGTAAACAATGTAATGCCAGGAAGAAGTACCGAATGTCAGCTAGAAACCGGTGCAGAGGGAAAAGAGTCAGGCAGAGCTGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS GCA 90 bp | AGGAGCAATCTAGAAAGTGCTGTACTTGCAGCGAATTTTTCTGTCTaGAAGAGCTGTAGTCAGGGCTCAGCCTTTTCAGTGCTGATGGCA | + |
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Preference number: 5 (lower is better) Translates to: RSNLESAVLAANFSV*KSCSQGSAFSVLMA Trigger: TGCCATCAGCACTGAAAAGGCTGAGCCCTGACTACAGCTCTTGCAGACAGAAAAATTCGCTGCAAGTACAGCACTTTCTAGATTGCTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 90 bp | CCAGCCAACACCTGTGGGCATTTGTGTACAGGTGCTCGTATTGGTTaGTTACTTGAGGGTCAATGTTTGCCTCTCATGAAAGATGATGGT | + |
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Preference number: 5 (lower is better) Translates to: PANTCGHLCTGARIG*LLEGQCLPLMKDDG Trigger: ACCATCATCTTTCATGAGAGGCAAACATTGACCCTCAAGTAACCAACCAATACGAGCACCTGTACACAAATGCCCACAGGTGTTGGCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS GCA 90 bp | GGGTCCAGATATGTGGTCTCAGCAGCTGAGCCGGACAAGGAAACTTaGCTAAGACTAGACCATATTTTGAATTTTTCCAGGTTCATTCCC | + |
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Preference number: 5 (lower is better) Translates to: GSRYVVSAAEPDKET*LRLDHILNFSRFIP Trigger: GGGAATGAACCTGGAAAAATTCAAAATATGGTCTAGTCTTAGGCAAGTTTCCTTGTCCGGCTCAGCTGCTGAGACCACATATCTGGACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 90 bp | CAGGTTCATTCCCAGGGTTCCAAGACTTCAGTGTTCATCTTCTCATaGCCCACTGATGGGTCACACTCCAAGAATGGATTTGAAAAACAC | + |
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Preference number: 5 (lower is better) Translates to: QVHSQGSKTSVFIFS*PTDGSHSKNGFEKH Trigger: GTGTTTTTCAAATCCATTCTTGGAGTGTGACCCATCAGTGGGTCATGAGAAGATGAACACTGAAGTCTTGGAACCCTGGGAATGAACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000519684.5 |
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| CDS GCA 90 bp | CGGGCTTTGTCGAGTTTGGCCAGGGCTTCATATTTGGCCTTTTCATaGTTTGAGATGGATCTCCATTTTTCCGAACACTTTCTAGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: RALSSLARASYLAFS*FEMDLHFSEHFLEN Trigger: GTTCTCTAGAAAGTGTTCGGAAAAATGGAGATCCATCTCAAAGCATGAAAAGGCCAAATATGAAGCCCTGGCCAAACTCGACAAAGCCCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 90 bp | CAACATAATTCATCATTTCTTCCTGGTATCGGGCTTTGTCGAGTTTaGCCAGGGCTTCATATTTGGCCTTTTCATGCTTTGAGATGGATC | + |
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Preference number: 5 (lower is better) Translates to: QHNSSFLPGIGLCRV*PGLHIWPFHALRWI Trigger: GATCCATCTCAAAGCATGAAAAGGCCAAATATGAAGCCCTGGCCAAACTCGACAAAGCCCGATACCAGGAAGAAATGATGAATTATGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 90 bp | TTAGAACACAAAGCTGTAACAGCTACACTCAAACTGGCCGGCTTCTaGCTTTTGGTCAAAGTAATTGCAGATATTCCACTAGTAGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: LEHKAVTATLKLAGF*LLVKVIADIPLVGE Trigger: CTCACCTACTAGTGGAATATCTGCAATTACTTTGACCAAAAGCCAGAAGCCGGCCAGTTTGAGTGTAGCTGTTACAGCTTTGTGTTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000458277.1 |
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| CDS TCA 90 bp | TTTGTCGAGTTTGGCCAGGGCTTCATATTTGGCCTTTTCATGCTTTaGGATGGATCTCCATTTTTCCGAACACTTTCTAGAGAACTCTTT | + |
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Preference number: 5 (lower is better) Translates to: FVEFGQGFIFGLFML*DGSPFFRTLSRELF Trigger: AAAGAGTTCTCTAGAAAGTGTTCGGAAAAATGGAGATCCATCTCAAAGCATGAAAAGGCCAAATATGAAGCCCTGGCCAAACTCGACAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS GCA 90 bp | ATAAAATGTGAAGTGTTTCTGTTTGCCTTGAACAGTGGCAGCTCATaGCATACAAAGGGTTTAGTAGTAACTCTAAAAGTAATCAGGTAT | + |
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Preference number: 5 (lower is better) Translates to: IKCEVFLFALNSGSS*HTKGLVVTLKVIRY Trigger: ATACCTGATTACTTTTAGAGTTACTACTAAACCCTTTGTATGGCATGAGCTGCCACTGTTCAAGGCAAACAGAAACACTTCACATTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 72 bp | GGTCTGTCGCTGTTGACCACATCTTCCCTGTGGCCTTaGCCACCTGCACCACCGACCAGTTCGGGTTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: GLSLLTTSSLWP*PPAPPTSSGSP Trigger: GGGAGAACCCGAACTGGTCGGTGGTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS GCA 72 bp | GCTGTTGACCACATCTTCCCTGTGGCCTTGGCCACCTaGACCACCGACCAGTTCGGGTTCTCCCTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: AVDHIFPVALAT*TTDQFGFSLFS Trigger: GCTGAAGAGGGAGAACCCGAACTGGTCGGTGGTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CAA 90 bp | GAGCCACTCTTTGCTCATAAGGGTGCTTCTCCAGGTCTGTCGCTGTaGACCACATCTTCCCTGTGGCCTTGGCCACCTGCACCACCGACC | + |
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Preference number: 6 (lower is better) Translates to: EPLFAHKGASPGLSL*TTSSLWPWPPAPPT Trigger: GGTCGGTGGTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTTATGAGCAAAGAGTGGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 72 bp | CAGAGCTGTTGCCAGGGCACTGAGGGTCCAGATATGTaGTCTCAGCAGCTGAGCCGGACAAGGAAACTTGCC | + |
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Preference number: 6 (lower is better) Translates to: QSCCQGTEGPDM*SQQLSRTRKLA Trigger: GGCAAGTTTCCTTGTCCGGCTCAGCTGCTGAGACCACATATCTGGACCCTCAGTGCCCTGGCAACAGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 72 bp | TTGCTCATAAGGGTGCTTCTCCAGGTCTGTCGCTGTTaGCCACATCTTCCCTGTGGCCTTGGCCACCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LLIRVLLQVCRC*PHLPCGLGHLH Trigger: GTGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTTATGAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 72 bp | CTTGGCAGAAGAGTAGGAAGGATGATGGAGGCCGTCTaGGTTCCTGGGGATCCCGCTTTCTCCGTTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LGRRVGRMMEAV*VPGDPAFSVSS Trigger: GGAAGAAACGGAGAAAGCGGGATCCCCAGGAACCCAGACGGCCTCCATCATCCTTCCTACTCTTCTGCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 72 bp | AAGAGTAGGAAGGATGATGGAGGCCGTCTGGGTTCCTaGGGATCCCGCTTTCTCCGTTTCTTCCTCTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: KSRKDDGGRLGS*GSRFLRFFLLP Trigger: TGGCAAGAGGAAGAAACGGAGAAAGCGGGATCCCCAGGAACCCAGACGGCCTCCATCATCCTTCCTACTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CAA 72 bp | TTTGCTCATAAGGGTGCTTCTCCAGGTCTGTCGCTGTaGACCACATCTTCCCTGTGGCCTTGGCCACCTGCA | + |
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Preference number: 6 (lower is better) Translates to: FAHKGASPGLSL*TTSSLWPWPPA Trigger: TGCAGGTGGCCAAGGCCACAGGGAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTTATGAGCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS TCA 72 bp | AGGGCACTGAGGGTCCAGATATGTGGTCTCAGCAGCTaGGCCGGACAAGGAAACTTGCCTAAGACTAGACCA | + |
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Preference number: 6 (lower is better) Translates to: RALRVQICGLSS*AGQGNLPKTRP Trigger: TGGTCTAGTCTTAGGCAAGTTTCCTTGTCCGGCTCAGCTGCTGAGACCACATATCTGGACCCTCAGTGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 72 bp | CAGCCACTCACAGGTGAGAGTGTGGATTTTGACGGCTaGTTGCTTGACCTAAGCCTGTGCTTCATCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: QPLTGESVDFDG*LLDLSLCFILP Trigger: AGGCAGGATGAAGCACAGGCTTAGGTCAAGCAATCAGCCGTCAAAATCCACACTCTCACCTGTGAGTGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 90 bp | AAGAGCTGTAGTCAGGGCTCAGCCTTTTCAGTGCTGATGGCATTGTaGAGTCAGAGGAGGGAAACTGTGACATCATCCACAAGCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: KSCSQGSAFSVLMAL*SQRRETVTSSTSQP Trigger: TGGCTGGCTTGTGGATGATGTCACAGTTTCCCTCCTCTGACTCAACAATGCCATCAGCACTGAAAAGGCTGAGCCCTGACTACAGCTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 90 bp | TGCAAGAGCTGTAGTCAGGGCTCAGCCTTTTCAGTGCTGATGGCATaGTTGAGTCAGAGGAGGGAAACTGTGACATCATCCACAAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: CKSCSQGSAFSVLMA*LSQRRETVTSSTSQ Trigger: CTGGCTTGTGGATGATGTCACAGTTTCCCTCCTCTGACTCAACAATGCCATCAGCACTGAAAAGGCTGAGCCCTGACTACAGCTCTTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 72 bp | CCAAGAATGGATTTGAAAAACACTGTCCAGACAAGCTaGGAGGGAGCTTCCGCCTCGGAGACTGTGAGATCC | + |
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Preference number: 6 (lower is better) Translates to: PRMDLKNTVQTS*EGASASETVRS Trigger: GGATCTCACAGTCTCCGAGGCGGAAGCTCCCTCTCAGCTTGTCTGGACAGTGTTTTTCAAATCCATTCTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | TTCCTCGAAGTACTTAGCTCTCAGGAGAGCCACTCTTaGCTCATAAGGGTGCTTCTCCAGGTCTGTCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: FLEVLSSQESHS*LIRVLLQVCRC Trigger: ACAGCGACAGACCTGGAGAAGCACCCTTATGAGCAAAGAGTGGCTCTCCTGAGAGCTAAGTACTTCGAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CAA 90 bp | ACATCATCCACAAGCCAGCCAATCCCAGCCAACACCTGTGGGCATTaGTGTACAGGTGCTCGTATTGGTTGGTTACTTGAGGGTCAATGT | + |
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Preference number: 6 (lower is better) Translates to: TSSTSQPIPANTCGH*CTGARIGWLLEGQC Trigger: ACATTGACCCTCAAGTAACCAACCAATACGAGCACCTGTACACAAATGCCCACAGGTGTTGGCTGGGATTGGCTGGCTTGTGGATGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | TGTAGTCAGGGCTCAGCCTTTTCAGTGCTGATGGCATaGTTGAGTCAGAGGAGGGAAACTGTGACATCATCC | + |
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Preference number: 6 (lower is better) Translates to: CSQGSAFSVLMA*LSQRRETVTSS Trigger: GGATGATGTCACAGTTTCCCTCCTCTGACTCAACAATGCCATCAGCACTGAAAAGGCTGAGCCCTGACTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 72 bp | ATTCCACTAGTAGGTGAGAGTGTGGATTTTGACGGCTaGTTGCTTGACCTAAGCCTGTGCTTCATCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: IPLVGESVDFDG*LLDLSLCFILP Trigger: AGGCAGGATGAAGCACAGGCTTAGGTCAAGCAATCAGCCGTCAAAATCCACACTCTCACCTACTAGTGGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000458277.1 |
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| CDS GCA 72 bp | ATGGGGTCTGCCTTCCTCACTATACGATTTTCAGGATaGCTCATCATCCCTTCCAAAGACAGGCTGAGCATA | + |
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Preference number: 6 (lower is better) Translates to: MGSAFLTIRFSG*LIIPSKDRLSI Trigger: TATGCTCAGCCTGTCTTTGGAAGGGATGATGAGGCATCCTGAAAATCGTATAGTGAGGAAGGCAGACCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 72 bp | AGGAATAAAAACAGATGGCACTCCCCCTCTCCAGTGTaGGCTGGACTTAGCCACCCACTACTAATGAATAGA | + |
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Preference number: 6 (lower is better) Translates to: RNKNRWHSPSPV*AGLSHPLLMNR Trigger: TCTATTCATTAGTAGTGGGTGGCTAAGTCCAGCCCACACTGGAGAGGGGGAGTGCCATCTGTTTTTATTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | CCAACACCTGTGGGCATTTGTGTACAGGTGCTCGTATaGGTTGGTTACTTGAGGGTCAATGTTTGCCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: PTPVGICVQVLV*VGYLRVNVCLS Trigger: TGAGAGGCAAACATTGACCCTCAAGTAACCAACCAATACGAGCACCTGTACACAAATGCCCACAGGTGTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS TCA 72 bp | TCCCAGGGTTCCAAGACTTCAGTGTTCATCTTCTCATaGCCCACTGATGGGTCACACTCCAAGAATGGATTT | + |
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Preference number: 6 (lower is better) Translates to: SQGSKTSVFIFS*PTDGSHSKNGF Trigger: AAATCCATTCTTGGAGTGTGACCCATCAGTGGGTCATGAGAAGATGAACACTGAAGTCTTGGAACCCTGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519684.5 |
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| CDS CAA 90 bp | GCAGCTGAGCCGGACAAGGAAACTTGCCTAAGACTAGACCATATTTaGAATTTTTCCAGGTTCATTCCCAGGGTTCCAAGACTTCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: AAEPDKETCLRLDHI*NFSRFIPRVPRLQC Trigger: ACACTGAAGTCTTGGAACCCTGGGAATGAACCTGGAAAAATTCAAAATATGGTCTAGTCTTAGGCAAGTTTCCTTGTCCGGCTCAGCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 90 bp | CACAAAGCTGTAACAGCTACACTCAAACTGGCCGGCTTCTGGCTTTaGGTCAAAGTAATTGCAGATATTCCACTAGTAGGTGAGAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: HKAVTATLKLAGFWL*VKVIADIPLVGESV Trigger: CACACTCTCACCTACTAGTGGAATATCTGCAATTACTTTGACCAAAAGCCAGAAGCCGGCCAGTTTGAGTGTAGCTGTTACAGCTTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000458277.1 |
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| CDS GCA 72 bp | ACTGTTGTTCCCACACTCCAGGAGCAATCTAGAAAGTaGTGTACTTGCAGCGAATTTTTCTGTCTGCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: TVVPTLQEQSRK*CTCSEFFCLQE Trigger: CTCTTGCAGACAGAAAAATTCGCTGCAAGTACAGCACTTTCTAGATTGCTCCTGGAGTGTGGGAACAACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 72 bp | TCATCATTTCTTCCTGGTATCGGGCTTTGTCGAGTTTaGCCAGGGCTTCATATTTGGCCTTTTCATGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SSFLPGIGLCRV*PGLHIWPFHAL Trigger: CAAAGCATGAAAAGGCCAAATATGAAGCCCTGGCCAAACTCGACAAAGCCCGATACCAGGAAGAAATGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CCA 72 bp | ACCTGTGGGCATTTGTGTACAGGTGCTCGTATTGGTTaGTTACTTGAGGGTCAATGTTTGCCTCTCATGAAA | + |
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Preference number: 6 (lower is better) Translates to: TCGHLCTGARIG*LLEGQCLPLMK Trigger: TTTCATGAGAGGCAAACATTGACCCTCAAGTAACCAACCAATACGAGCACCTGTACACAAATGCCCACAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS GCA 72 bp | TATGTGGTCTCAGCAGCTGAGCCGGACAAGGAAACTTaGCTAAGACTAGACCATATTTTGAATTTTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: YVVSAAEPDKET*LRLDHILNFSR Trigger: CCTGGAAAAATTCAAAATATGGTCTAGTCTTAGGCAAGTTTCCTTGTCCGGCTCAGCTGCTGAGACCACATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | TTCATCATTTCTTCCTGGTATCGGGCTTTGTCGAGTTaGGCCAGGGCTTCATATTTGGCCTTTTCATGCTTT | + |
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Preference number: 6 (lower is better) Translates to: FIISSWYRALSS*ARASYLAFSCF Trigger: AAAGCATGAAAAGGCCAAATATGAAGCCCTGGCCAAACTCGACAAAGCCCGATACCAGGAAGAAATGATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425537.1 ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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| CDS CAA 90 bp | GTAATCAGGTATGACAGCTGTGACTTGGTTCCTGTCAGGACAAAGTaGTCTAATTTAAAACCTGAGCACTTGGGCTATGAGTTGGAACTC | + |
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Preference number: 6 (lower is better) Translates to: VIRYDSCDLVPVRTK*SNLKPEHLGYELEL Trigger: GAGTTCCAACTCATAGCCCAAGTGCTCAGGTTTTAAATTAGACAACTTTGTCCTGACAGGAACCAAGTCACAGCTGTCATACCTGATTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 72 bp | AAAGCTGTAACAGCTACACTCAAACTGGCCGGCTTCTaGCTTTTGGTCAAAGTAATTGCAGATATTCCACTA | + |
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Preference number: 6 (lower is better) Translates to: KAVTATLKLAGF*LLVKVIADIPL Trigger: TAGTGGAATATCTGCAATTACTTTGACCAAAAGCCAGAAGCCGGCCAGTTTGAGTGTAGCTGTTACAGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000458277.1 ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | TATGACAGCTGTGACTTGGTTCCTGTCAGGACAAAGTaGTCTAATTTAAAACCTGAGCACTTGGGCTATGAG | + |
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Preference number: 6 (lower is better) Translates to: YDSCDLVPVRTK*SNLKPEHLGYE Trigger: CTCATAGCCCAAGTGCTCAGGTTTTAAATTAGACAACTTTGTCCTGACAGGAACCAAGTCACAGCTGTCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 90 bp | TTGTGTACAGGTGCTCGTATTGGTTGGTTACTTGAGGGTCAATGTTaGCCTCTCATGAAAGATGATGGTTCATTCATAGTAGGCTATGAG | + |
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Preference number: 6 (lower is better) Translates to: LCTGARIGWLLEGQC*PLMKDDGSFIVGYE Trigger: CTCATAGCCTACTATGAATGAACCATCATCTTTCATGAGAGGCAAACATTGACCCTCAAGTAACCAACCAATACGAGCACCTGTACACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CAA 72 bp | GGTGCTCGTATTGGTTGGTTACTTGAGGGTCAATGTTaGCCTCTCATGAAAGATGATGGTTCATTCATAGTA | + |
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Preference number: 6 (lower is better) Translates to: GARIGWLLEGQC*PLMKDDGSFIV Trigger: TACTATGAATGAACCATCATCTTTCATGAGAGGCAAACATTGACCCTCAAGTAACCAACCAATACGAGCACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519684.5 ENST00000522796.1 |
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| CDS CCA 72 bp | CTTTCTAGAGAACTCTTTAAAGCCAACATAGGTATTTaGCTGCTGCTCCTTGAATTTGTTTCTGTAATTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSRELFKANIGI*LLLLEFVSVIQ Trigger: CTGAATTACAGAAACAAATTCAAGGAGCAGCAGCCAAATACCTATGTTGGCTTTAAAGAGTTCTCTAGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000519684.5 ENST00000522796.1 ENST00000681531.1 |
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