Pregenerated sensors for HMGB3 (Homo sapiens)
Ensembl gene IDs: ENSG00000029993Ensembl transcript IDs: ENST00000325307.12, ENST00000419110.5
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTaGCTATGTCGTTCTCCTAACTCCTCCAGACTTCATCTGAATGCC | + |
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Preference number: 1 (lower is better) Translates to: VLITHLPIPWKAAEP*LCRSPNSSRLHLNA Trigger: GGCATTCAGATGAAGTCTGGAGGAGTTAGGAGAACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CCA 90 bp | ATGGTTGATTCCATTAGCCTGCCCTATAGCTCAGGTGGCCCAAGATaGAGCCTATCATCTTCCTTGGGGTGTTTGGTGTTTCCAAGTAGG | + |
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Preference number: 1 (lower is better) Translates to: MVDSISLPYSSGGPR*SLSSSLGCLVFPSR Trigger: CCTACTTGGAAACACCAAACACCCCAAGGAAGATGATAGGCTCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR GCA 90 bp | TTTCATGATACATTTAGTGCTCAGAAATGGTTGATTCCATTAGCCTaGCCTATAGCTCAGGTGGCCCAAGATGGAGCCTATCATCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: FHDTFSAQKWLIPLA*PIAQVAQDGAYHLP Trigger: AGGAAGATGATAGGCTCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTGAGCACTAAATGTATCATGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR TCA 90 bp | AACCTAGATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCCCTCCAGACTTCATCTaGATGCCACTCAGACACAAA | + |
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Preference number: 2 (lower is better) Translates to: NLDSLSPNHPPSYTLEGCPPDFI*MPLRHK Trigger: TTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGG...GCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CAA 90 bp | GCAGGCCATTCAACTTTTCATGATACATTTAGTGCTCAGAAATGGTaGATTCCATTAGCCTGCCCTATAGCTCAGGTGGCCCAAGATGGA | + |
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Preference number: 2 (lower is better) Translates to: AGHSTFHDTFSAQKW*IPLACPIAQVAQDG Trigger: TCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTGAGCACTAAATGTATCATGAAAAGTTGAATGGCCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR GCA 90 bp | AACTCCTCCAGACTTCATCTGAATGCCACTCAGACACAAACAAAATCACACAGTTGGGGGTTTGTTCACTaGTGTGAGTCAGAAATTGAC | + |
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Preference number: 2 (lower is better) Translates to: NSSRLHLNATQTQTKSHSWGFVH*CESEID Trigger: GTCAATTTCTGACTCACAGCAGTGAACAAACCCCCA...ACTGTGTGATTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR GCA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACTTGATTCCATTAGCCTaGCCTATAGCTCAGGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHLIPLA*PIAQVA Trigger: GGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAA...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CCA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACCACCTTCCTATACCTTaGAAGGCTGCTGAACCTTGC | + |
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Preference number: 2 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHHLPIP*KAAEPC Trigger: GCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTG...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CAA 90 bp | TGGGCAATAGCAACACTCACCCACAACACAGTACTGTATCCTTCATaGCTACGGACAGTAATGATGTATATACACATCAGCCTTCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: WAIATLTHNTVLYPS*LRTVMMYIHISLQN Trigger: ATTTTGAAGGCTGATGTGTATATACATCATTACTGTCCGTAGCAATGAAGGATACAGTACTGTGTTGTGGGTGAGTGTTGCTATTGCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CCA 72 bp | TCCATTAGCCTGCCCTATAGCTCAGGTGGCCCAAGATaGAGCCTATCATCTTCCTTGGGGTGTTTGGTGTTT | + |
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Preference number: 3 (lower is better) Translates to: SISLPYSSGGPR*SLSSSLGCLVF Trigger: AAACACCAAACACCCCAAGGAAGATGATAGGCTCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR GCA 72 bp | ACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTaGCTATGTCGTTCTCCTAACTCCTCCAGACTTCAT | + |
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Preference number: 3 (lower is better) Translates to: THLPIPWKAAEP*LCRSPNSSRLH Trigger: ATGAAGTCTGGAGGAGTTAGGAGAACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CCA 72 bp | ATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTaGAAGGCTGCTGAACCTTGCCTATGTCGTTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: IASVLITHLPIP*KAAEPCLCRSP Trigger: AGGAGAACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR GCA 72 bp | ACATTTAGTGCTCAGAAATGGTTGATTCCATTAGCCTaGCCTATAGCTCAGGTGGCCCAAGATGGAGCCTAT | + |
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Preference number: 3 (lower is better) Translates to: TFSAQKWLIPLA*PIAQVAQDGAY Trigger: ATAGGCTCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTGAGCACTAAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CAA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACCAATGGAGTGGGGGTTaGTTCACTGCTGTGAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHQWSGG*FTAVSQ Trigger: CTGACTCACAGCAGTGAACAAACCCCCACTCCATTG...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CAA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCAAGTGCTCAGAAATGGTaGATTCCATTAGCCTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPSAQKW*IPLACP Trigger: AGGGCAGGCTAATGGAATCAACCATTTCTGAGCACT...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR GCA 72 bp | CAGTCTCCAAATACAATGGAGTGGGGGTTTGTTCACTaGTGTGAGTCAGAAATTGACTGTTATAATAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: QSPNTMEWGFVH*CESEIDCYNRE Trigger: TTCTCTATTATAACAGTCAATTTCTGACTCACAGCAGTGAACAAACCCCCACTCCATTGTATTTGGAGACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CAA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCATCAAGACCCCAAATGTaGGGCACCACAAATAATGTG | + |
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Preference number: 3 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPSRPQM*GTTNNV Trigger: CACATTATTTGTGGTGCCCAACATTTGGGGTCTTGA...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CAA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACGTACTGTATCCTTCATaGCTACGGACAGTAATGATG | + |
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Preference number: 3 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHVLYPS*LRTVMM Trigger: CATCATTACTGTCCGTAGCAATGAAGGATACAGTAC...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR-3UTR CAA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCAGCTGTGAGTCAGAAATaGACTGTTATAATAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPAVSQK*TVIIEK Trigger: CTTCTCTATTATAACAGTCAATTTCTGACTCACAGC...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR TCA 72 bp | CATCAATCTACATTTCCAGTGAATGAGCTAAACTTATaGGCAGGCCATTCAACTTTTCATGATACATTTAGT | + |
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Preference number: 3 (lower is better) Translates to: HQSTFPVNELNL*AGHSTFHDTFS Trigger: ACTAAATGTATCATGAAAAGTTGAATGGCCTGCTCATAAGTTTAGCTCATTCACTGGAAATGTAGATTGATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTAACCTTGGAAGGCTGCTaGACCTTGCCTATGTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: SVLITHLPIPWKAAEPCLTLEGC*TLPMSF Trigger: GAACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGT...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | AACCTAGATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCGCACCACAAATAATGTaGTATGTGCCAGGAGCACGG | + |
|
Preference number: 4 (lower is better) Translates to: NLDSLSPNHPPSYTLEGCAPQIM*YVPGAR Trigger: CCGTGCTCCTGGCACATATCACATTATTTGTGGTGC...GCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CCA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTACACCTTCCTATACCTTaGAAGGCTGCTGAACCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVLITHLPIPWKAAEPCLHLPIP*KAAEPC Trigger: GCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTG...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CCA 90 bp | CTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTATGTCGTTCAGGTGGCCCAAGATaGAGCCTATCATCTTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LITHLPIPWKAAEPCLCRSGGPR*SLSSSL Trigger: CAAGGAAGATGATAGGCTCCATCTTGGGCCACCTGA...ACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | CTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTATGTCGTCCTCCAGACTTCATCTaGATGCCACTCAGACACAAA | + |
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Preference number: 4 (lower is better) Translates to: LITHLPIPWKAAEPCLCRPPDFI*MPLRHK Trigger: TTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGG...ACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | CTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTATGTCGTAAGGCTGCTGAACCTTaGCTATGTCGTTCTCCTAAC | + |
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Preference number: 4 (lower is better) Translates to: LITHLPIPWKAAEPCLCRKAAEP*LCRSPN Trigger: GTTAGGAGAACGACATAGGCAAGGTTCAGCAGCCTT...ACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTACACCGCCTCCAGACATaGAAGTTTCTCAACAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SVLITHLPIPWKAAEPCLHRLQT*KFLNSE Trigger: TTCACTGTTGAGAAACTTGCATGTCTGGAGGCGGTG...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CCA 90 bp | AACCTAGATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCCTTCCTTGGGGTGTTTaGTGTTTCCAAGTAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: NLDSLSPNHPPSYTLEGCLPWGV*CFQVGA Trigger: TGCTCCTACTTGGAAACACCAAACACCCCAAGGAAG...GCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | AACCTAGATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGGGGGTTTGTTCACTaGTGTGAGTCAGAAATTGAC | + |
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Preference number: 4 (lower is better) Translates to: NLDSLSPNHPPSYTLEGCWGFVH*CESEID Trigger: GTCAATTTCTGACTCACAGCAGTGAACAAACCCCCA...GCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTAGCACAAAAACACTCCTaGGTGTTTCATAGCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: SVLITHLPIPWKAAEPCLAQKHS*VFHSLK Trigger: TTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGC...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTATACATTTCCAGTGAATaGGCTAAACTTATGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVLITHLPIPWKAAEPCLYISSE*AKLMSR Trigger: CCTGCTCATAAGTTTAGCTCATTCACTGGAAATGTA...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | AACCTAGATAGCCTCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCAATGAGCTAAACTTATaGGCAGGCCATTCAACTTTT | + |
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Preference number: 4 (lower is better) Translates to: NLDSLSPNHPPSYTLEGCNELNL*AGHSTF Trigger: AAAAGTTGAATGGCCTGCTCATAAGTTTAGCTCATT...GCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR TCA 90 bp | AACTCCTCCAGACTTCATCTGAATGCCACTCAGACACAAACAAAATCACACAGTGAGAGCGAATGGCTATaGACACATAAGAGATCAGGC | + |
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Preference number: 4 (lower is better) Translates to: NSSRLHLNATQTQTKSHSESEWL*THKRSG Trigger: GCCTGATCTCTTATGTGTTCATAGCCATTCGCTCTC...ACTGTGTGATTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CAA 72 bp | TCAACTTTTCATGATACATTTAGTGCTCAGAAATGGTaGATTCCATTAGCCTGCCCTATAGCTCAGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: STFHDTFSAQKW*IPLACPIAQVA Trigger: GGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTGAGCACTAAATGTATCATGAAAAGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| 3UTR CAA 72 bp | GCAACACTCACCCACAACACAGTACTGTATCCTTCATaGCTACGGACAGTAATGATGTATATACACATCAGC | + |
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Preference number: 4 (lower is better) Translates to: ATLTHNTVLYPS*LRTVMMYIHIS Trigger: GCTGATGTGTATATACATCATTACTGTCCGTAGCAATGAAGGATACAGTACTGTGTTGTGGGTGAGTGTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACTTTAGTGTCACCACTTaGTACTGTGGCCATCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHFSVTT*YCGHLP Trigger: GGGGAGATGGCCACAGTAGCAAGTGGTGACACTAAA...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR GCA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCACTAGAAGAGCAATCTTaGCACAGTGTGAAAACGTTG | + |
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Preference number: 4 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPLEEQS*HSVKTL Trigger: CAACGTTTTCACACTGTGGCAAGATTGCTCTTCTAG...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CCA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCACATCAGCCTTCAAAATaGTATTTAGTGTCACCACTT | + |
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Preference number: 4 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPHQPSK*YLVSPL Trigger: AAGTGGTGACACTAAATACCATTTTGAAGGCTGATG...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | CTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTATGTCGTAGCCTATCATCTTCCTaGGGGTGTTTGGTGTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: LITHLPIPWKAAEPCLCRSLSSS*GCLVFP Trigger: TGGAAACACCAAACACCCCAAGGAAGATGATAGGCT...ACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTAGTACTGTATCCTTCATaGCTACGGACAGTAATGATG | + |
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Preference number: 5 (lower is better) Translates to: SVLITHLPIPWKAAEPCLVLYPS*LRTVMM Trigger: CATCATTACTGTCCGTAGCAATGAAGGATACAGTAC...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTAACTAGAAGAGCAATCTaGCCACAGTGTGAAAACGTT | + |
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Preference number: 5 (lower is better) Translates to: SVLITHLPIPWKAAEPCLTRRAI*PQCENV Trigger: AACGTTTTCACACTGTGGCAAGATTGCTCTTCTAGT...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | AACTCCTCCAGACTTCATCTGAATGCCACTCAGACACAAACAAAATCACACAGTTCTTCCTTGGGGTGTTaGGTGTTTCCAAGTAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: NSSRLHLNATQTQTKSHSSSLGC*VFPSRS Trigger: GCTCCTACTTGGAAACACCAAACACCCCAAGGAAGA...ACTGTGTGATTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | TCAGTCCTAATCACCCACCTTCCTATACCTTGGAAGGCTGCTGAACCTTGCCTAGCTGTGAGTCAGAAATaGACTGTTATAATAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: SVLITHLPIPWKAAEPCLAVSQK*TVIIEK Trigger: CTTCTCTATTATAACAGTCAATTTCTGACTCACAGC...TAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS GCA 90 bp | CGCAGGAAGTATTTCCATCCTTTGCATAGGAAATATTTCGATCTCTaGTCTCAAGAAAGCTACCTCTTATATGGAGCTGAAGCACTTGGC | + |
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Preference number: 5 (lower is better) Translates to: RRKYFHPLHRKYFDL*SQESYLLYGAEALG Trigger: GCCAAGTGCTTCAGCTCCATATAAGAGGTAGCTTTCTTGAGAGCAGAGATCGAAATATTTCCTATGCAAAGGATGGAAATACTTCCTGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419110.5 |
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| CDS GCA 90 bp | ATGATGAAAGGATTGCGCTTACGCGCAGGAAGTATTTCCATCCTTTaGATAGGAAATATTTCGATCTCTGCTCTCAAGAAAGCTACCTCT | + |
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Preference number: 5 (lower is better) Translates to: MMKGLRLRAGSISIL*IGNISISALKKATS Trigger: AGAGGTAGCTTTCTTGAGAGCAGAGATCGAAATATTTCCTATGCAAAGGATGGAAATACTTCCTGCGCGTAAGCGCAATCCTTTCATCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419110.5 |
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| CDS-3UTR CAA 90 bp | GACAGTAATGATGTATATACACATCAGCCTTCAAAATGGTATTTAGTGTCACCACAATGGAGTGGGGGTTaGTTCACTGCTGTGAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: DSNDVYTHQPSKWYLVSPQWSGG*FTAVSQ Trigger: CTGACTCACAGCAGTGAACAAACCCCCACTCCATTG...TGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS-3UTR CAA 90 bp | AAATTAATAGCACAAAAACACTCCTGCGTGTTTCATAGCCTCAAACATACACACTGTTTAGCAATGCATTaGGCCCCACAAAATAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: KLIAQKHSCVFHSLKHTHCLAMH*APQNRG Trigger: CCCCCTATTTTGTGGGGCCAAATGCATTGCTAAACA...GTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000325307.12 |
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| CDS CAA 72 bp | TCACCTTTAGCCATCCTGATTCGAATGATGAAAGGATaGCGCTTACGCGCAGGAAGTATTTCCATCCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: SPLAILIRMMKG*RLRAGSISILC Trigger: GCAAAGGATGGAAATACTTCCTGCGCGTAAGCGCAATCCTTTCATCATTCGAATCAGGATGGCTAAAGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419110.5 |
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| CDS CAA 90 bp | AATGATGAAAGGATTGCGCTTACGCGCAGGAAGTATTTCCATCCTTaGCATAGGAAATATTTCGATCTCTGCTCTCAAGAAAGCTACCTC | + |
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Preference number: 6 (lower is better) Translates to: NDERIALTRRKYFHP*HRKYFDLCSQESYL Trigger: GAGGTAGCTTTCTTGAGAGCAGAGATCGAAATATTTCCTATGCAAAGGATGGAAATACTTCCTGCGCGTAAGCGCAATCCTTTCATCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419110.5 |
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