Pregenerated sensors for HMGB2 (Homo sapiens)
Ensembl gene IDs: ENSG00000164104Ensembl transcript IDs: ENST00000296503.10, ENST00000438704.6, ENST00000446922.6, ENST00000506267.1, ENST00000511316.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGCCGGCCCTCCACAGACCCAGCCCTCGCCGGCCCGCACCCCAAATaGCGCTCGCCGGGTCAGACCCCGAGAGCCACTGCGCCGAGACCG | + |
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Preference number: 5 (lower is better) Translates to: RRPSTDPALAGPHPK*RSPGQTPRATAPRP Trigger: CGGTCTCGGCGCAGTGGCTCTCGGGGTCTGACCCGGCGAGCGGCATTTGGGGTGCGGGCCGGCGAGGGCTGGGTCTGTGGAGGGCCGGCG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000506267.1 |
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| CDS GCA 90 bp | TCCCAGAACCGGGCCCGGTCAGGGGCAGTTTCCGCCTCCTCCGACTaGCCGCCGGCCCTCCACAGACCCAGCCCTCGCCGGCCCGCACCC | + |
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Preference number: 5 (lower is better) Translates to: SQNRARSGAVSASSD*PPALHRPSPRRPAP Trigger: GGGTGCGGGCCGGCGAGGGCTGGGTCTGTGGAGGGCCGGCGGGCAGTCGGAGGAGGCGGAAACTGCCCCTGACCGGGCCCGGTTCTGGGA 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506267.1 |
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| CDS TCA 90 bp | AGCGGCCGGACCCAACGGAGACGCTTCCCTCACGGGGCTCCGGCGTaGACTGGTTTATCTCTAACGCAATCCTCAGCCTCTTGTTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: SGRTQRRRFPHGAPA*TGLSLTQSSASCFA Trigger: TGCAAAACAAGAGGCTGAGGATTGCGTTAGAGATAAACCAGTTCACGCCGGAGCCCCGTGAGGGAAGCGTCTCCGTTGGGTCCGGCCGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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| CDS CCA 90 bp | CCGGACCCAACGGAGACGCTTCCCTCACGGGGCTCCGGCGTGAACTaGTTTATCTCTAACGCAATCCTCAGCCTCTTGTTTTGCAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: PDPTETLPSRGSGVN*FISNAILSLLFCRV Trigger: AACTCTGCAAAACAAGAGGCTGAGGATTGCGTTAGAGATAAACCAGTTCACGCCGGAGCCCCGTGAGGGAAGCGTCTCCGTTGGGTCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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| CDS GCA 90 bp | GACTATACAGACTATACAATAACTACAAGTAACTACAAGTCTGTCTaGAGGAATATACTAGTGCTACAAACACTGGTTTCAGTCAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: DYTDYTITTSNYKSV*RNILVLQTLVSVKR Trigger: CCTTTTGACTGAAACCAGTGTTTGTAGCACTAGTATATTCCTGCAGACAGACTTGTAGTTACTTGTAGTTATTGTATAGTCTGTATAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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| CDS GCA 90 bp | AGTATCAGTACTTTCACTACCAATACCCTTTTACATCACACACAGTaGCATAGTCCCTCCTGTACCTTCACATTTTATATATATCTACAT | + |
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Preference number: 5 (lower is better) Translates to: SISTFTTNTLLHHTQ*HSPSCTFTFYIYLH Trigger: ATGTAGATATATATAAAATGTGAAGGTACAGGAGGGACTATGGCACTGTGTGTGATGTAAAAGGGTATTGGTAGTGAAAGTACTGATACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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| CDS GCA 72 bp | CGGGCCCGGTCAGGGGCAGTTTCCGCCTCCTCCGACTaGCCGCCGGCCCTCCACAGACCCAGCCCTCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RARSGAVSASSD*PPALHRPSPRR Trigger: CCGGCGAGGGCTGGGTCTGTGGAGGGCCGGCGGGCAGTCGGAGGAGGCGGAAACTGCCCCTGACCGGGCCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506267.1 |
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| CDS GCA 72 bp | TCCACAGACCCAGCCCTCGCCGGCCCGCACCCCAAATaGCGCTCGCCGGGTCAGACCCCGAGAGCCACTGCG | + |
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Preference number: 6 (lower is better) Translates to: STDPALAGPHPK*RSPGQTPRATA Trigger: CGCAGTGGCTCTCGGGGTCTGACCCGGCGAGCGGCATTTGGGGTGCGGGCCGGCGAGGGCTGGGTCTGTGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000506267.1 |
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| CDS TCA 72 bp | ACCCAACGGAGACGCTTCCCTCACGGGGCTCCGGCGTaGACTGGTTTATCTCTAACGCAATCCTCAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TQRRRFPHGAPA*TGLSLTQSSAS Trigger: AGAGGCTGAGGATTGCGTTAGAGATAAACCAGTTCACGCCGGAGCCCCGTGAGGGAAGCGTCTCCGTTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446922.6 ENST00000511316.1 |
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| CDS CCA 72 bp | ACGGAGACGCTTCCCTCACGGGGCTCCGGCGTGAACTaGTTTATCTCTAACGCAATCCTCAGCCTCTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: TETLPSRGSGVN*FISNAILSLLF Trigger: AAACAAGAGGCTGAGGATTGCGTTAGAGATAAACCAGTTCACGCCGGAGCCCCGTGAGGGAAGCGTCTCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446922.6 ENST00000511316.1 |
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| CDS CAA 90 bp | CTTCTTCCTCCTCCTCCTCCTCATCTTCTGGTTCGTTCTTCTTCTTaGAGCCTGTTGGCCTGCCAGGGCCCTTCTTTCCTGCTTCACTTT | + |
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Preference number: 6 (lower is better) Translates to: LLPPPPPHLLVRSSS*SLLACQGPSFLLHF Trigger: AAAGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAACGAACCAGAAGATGAGGAGGAGGAGGAGGAAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000296503.10 ENST00000438704.6 ENST00000446922.6 ENST00000511316.1 |
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| CDS GCA 72 bp | ACTTTCACTACCAATACCCTTTTACATCACACACAGTaGCATAGTCCCTCCTGTACCTTCACATTTTATATA | + |
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Preference number: 6 (lower is better) Translates to: TFTTNTLLHHTQ*HSPSCTFTFYI Trigger: TATATAAAATGTGAAGGTACAGGAGGGACTATGGCACTGTGTGTGATGTAAAAGGGTATTGGTAGTGAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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| CDS GCA 72 bp | GACTATACAATAACTACAAGTAACTACAAGTCTGTCTaGAGGAATATACTAGTGCTACAAACACTGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: DYTITTSNYKSV*RNILVLQTLVS Trigger: TGAAACCAGTGTTTGTAGCACTAGTATATTCCTGCAGACAGACTTGTAGTTACTTGTAGTTATTGTATAGTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511316.1 |
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