Pregenerated sensors for HMGA1 (Homo sapiens)

Ensembl gene IDs: ENSG00000137309

Ensembl transcript IDs: ENST00000374116.3, ENST00000447654.5, ENST00000674029.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GAAACCGGGAGAGAGCAGAGGCGCTCAGAGACCGCCGCCGCCGCGTaGTCGCCGCCCAGGCCCCCGCGGGGTATTTATGTGTCACAGCCA	+
Preference number: 5 (lower is better) Translates to: ETGREQRRSETAAAA*SPPRPPRGIYVSQP Trigger: TGGCTGTGACACATAAATACCCCGCGGGGGCCTGGGCGGCGAGCACGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCTCCCGGTTTC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000447654.5 ENST00000674029.1
CDS GCA 90 bp	GCTGAGGACCGGCCTGGCTCCGCCGCGGCCGCCGCTGGTAGCAAATaGGGATCTGAAACCGGGAGAGAGCAGAGGCGCTCAGAGACCGCC	+
Preference number: 5 (lower is better) Translates to: AEDRPGSAAAAAGSK*GSETGREQRRSETA Trigger: GGCGGTCTCTGAGCGCCTCTGCTCTCTCCCGGTTTCAGATCCGCATTTGCTACCAGCGGCGGCCGCGGCGGAGCCAGGCCGGTCCTCAGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447654.5 ENST00000674029.1
CDS CCA 90 bp	AGGGGGTTCCAGTTGGGCGAAGCCAGTCCGGAATCCCAGAGAGCCTaGCCCGGCCTGCCTGGAGATCTTGGCGGGTCTCCCTGGAAGCTC	+
Preference number: 5 (lower is better) Translates to: RGFQLGEASPESQRA*PGLPGDLGGSPWKL Trigger: GAGCTTCCAGGGAGACCCGCCAAGATCTCCAGGCAGGCCGGGCCAGGCTCTCTGGGATTCCGGACTGGCTTCGCCCAACTGGAACCCCCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000374116.3
CDS GCA 72 bp	AGAGAGCAGAGGCGCTCAGAGACCGCCGCCGCCGCGTaGTCGCCGCCCAGGCCCCCGCGGGGTATTTATGTG	+
Preference number: 6 (lower is better) Translates to: REQRRSETAAAA*SPPRPPRGIYV Trigger: CACATAAATACCCCGCGGGGGCCTGGGCGGCGAGCACGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000447654.5 ENST00000674029.1
CDS CCA 72 bp	CAGTTGGGCGAAGCCAGTCCGGAATCCCAGAGAGCCTaGCCCGGCCTGCCTGGAGATCTTGGCGGGTCTCCC	+
Preference number: 6 (lower is better) Translates to: QLGEASPESQRA*PGLPGDLGGSP Trigger: GGGAGACCCGCCAAGATCTCCAGGCAGGCCGGGCCAGGCTCTCTGGGATTCCGGACTGGCTTCGCCCAACTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374116.3
CDS CCA 72 bp	ATCCCAGAGAGCCTGGCCCGGCCTGCCTGGAGATCTTaGCGGGTCTCCCTGGAAGCTCTCATACCATCTGGT	+
Preference number: 6 (lower is better) Translates to: IPESLARPAWRS*RVSLEALIPSG Trigger: ACCAGATGGTATGAGAGCTTCCAGGGAGACCCGCCAAGATCTCCAGGCAGGCCGGGCCAGGCTCTCTGGGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374116.3

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