Pregenerated sensors for HLA-DQB1 (Homo sapiens)

Ensembl gene IDs: ENSG00000225824, ENSG00000231286, ENSG00000233209

Ensembl transcript IDs: ENST00000472708.5, ENST00000475182.5, ENST00000479570.5

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ATAAATATGACAATCACTGAGAATCCAAAGATAAACAACATACCATaGTCCCTGCCTTTACAGAATGTGCGATCTAGTAACAGACAGCAA	+
Preference number: 5 (lower is better) Translates to: INMTITENPKINNIP*SLPLQNVRSSNRQQ Trigger: TTGCTGTCTGTTACTAGATCGCACATTCTGTAAAGGCAGGGACCATGGTATGTTGTTTATCTTTGGATTCTCAGTGATTGTCATATTTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000472708.5 ENST00000479570.5
CDS TCA 72 bp	ACATGCCAGTCAATGTGTCAGGTACCGGCCATAAAATaGTTAAAACACTCTCACCTCAAAGAGCTCCGCCAT	+
Preference number: 6 (lower is better) Translates to: TCQSMCQVPAIK*LKHSHLKELRH Trigger: ATGGCGGAGCTCTTTGAGGTGAGAGTGTTTTAATCATTTTATGGCCGGTACCTGACACATTGACTGGCATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472708.5
CDS TCA 72 bp	ACATGCCAGTCAATGTGTCAGATACCAGGCATGCAATaGTTAAAACACTCTCATCTCAAAGAGCTCCGCCAT	+
Preference number: 6 (lower is better) Translates to: TCQSMCQIPGMQ*LKHSHLKELRH Trigger: ATGGCGGAGCTCTTTGAGATGAGAGTGTTTTAATCATTGCATGCCTGGTATCTGACACATTGACTGGCATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000479570.5
CDS TCA 72 bp	ACATACCAGTCAATGTGTCAGGTACTAGGCATGCAATaGTTAAAACACCCTCACCTCAAAGATCTCTGCCAT	+
Preference number: 6 (lower is better) Translates to: TYQSMCQVLGMQ*LKHPHLKDLCH Trigger: ATGGCAGAGATCTTTGAGGTGAGGGTGTTTTAATCATTGCATGCCTAGTACCTGACACATTGACTGGTATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475182.5
CDS GCA 72 bp	CTGAGAATCCAAAGACAAACAACATACCATGGTCCCTaGCTTTATAAAATGTGCAACCTAGTAACAGACAGC	+
Preference number: 6 (lower is better) Translates to: LRIQRQTTYHGP*LYKMCNLVTDS Trigger: GCTGTCTGTTACTAGGTTGCACATTTTATAAAGGCAGGGACCATGGTATGTTGTTTGTCTTTGGATTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000475182.5

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