Pregenerated sensors for HIGD1A (Homo sapiens)

Ensembl gene IDs: ENSG00000181061

Ensembl transcript IDs: ENST00000321331.12, ENST00000452906.3

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GTTGAAGCATCAGAATCGCACGAAGCTAGGAGGTGGAGGGTGCCGTaGGCTCAGATCACACCACTGTACTCCAGCCTCAGCAACAGAGCA	+
Preference number: 1 (lower is better) Translates to: VEASESHEARRWRVP*AQITPLYSSLSNRA Trigger: TGCTCTGTTGCTGAGGCTGGAGTACAGTGGTGTGATCTGAGCTCACGGCACCCTCCACCTCCTAGCTTCGTGCGATTCTGATGCTTCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR GCA 90 bp	GGAAGGTTGAAGCATCAGAATCGCACGAAGCTAGGAGGTGGAGGGTaGCGTGAGCTCAGATCACACCACTGTACTCCAGCCTCAGCAACA	+
Preference number: 1 (lower is better) Translates to: GRLKHQNRTKLGGGG*RELRSHHCTPASAT Trigger: TGTTGCTGAGGCTGGAGTACAGTGGTGTGATCTGAGCTCACGGCACCCTCCACCTCCTAGCTTCGTGCGATTCTGATGCTTCAACCTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR TCA 90 bp	CAGATAGATCTCTTGAAGCCAGGAGTTCAAGATCATCCAACATGGTaGAACCTCGCCTTTACTAAAAACACAAAAATTAGCCCGACATGG	+
Preference number: 1 (lower is better) Translates to: QIDLLKPGVQDHPTW*NLAFTKNTKISPTW Trigger: CCATGTCGGGCTAATTTTTGTGTTTTTAGTAAAGGCGAGGTTTCACCATGTTGGATGATCTTGAACTCCTGGCTTCAAGAGATCTATCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR GCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAGTGAGCCAAGATCGTaGCACTGCACGCCAGCCAAG	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLSEPRS*HCTPAK Trigger: CTTGGCTGGCGTGCAGTGGCACGATCTTGGCTCACT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGGCACGCCAGCCAAGATaGCAGAGAATAACTCCGTCT	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLARQPR*QRITPS Trigger: AGACGGAGTTATTCTCTGTCATCTTGGCTGGCGTGC...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGGGCAAGAGAATCACTTaGACCTGGGGGATGGAAGTT	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLGKRIT*TWGMEV Trigger: AACTTCCATCCCCCAGGTTCAAGTGATTCTCTTGCC...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGGCCTGGCCAACATGGTaGAACCTCGTCTCTACTAAA	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLAWPTW*NLVSTK Trigger: TTTAGTAGAGACGAGGTTTCACCATGTTGGCCAGGC...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGGGCAGGTGGATAACCTaGGGTCAGGAATTCAAGATC	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLGRWIT*GQEFKI Trigger: GATCTTGAATTCCTGACCTCAGGTTATCCACCTGCC...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR GCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAAATATCTGACATTCTaGAGCAAACAGGGAGTACCT	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLKYLTF*SKQGVP Trigger: AGGTACTCCCTGTTTGCTGCAGAATGTCAGATATTT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR CCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAGTGTTATAATTATATaGATAATCAGCTGGGCGTGG	+
Preference number: 2 (lower is better) Translates to: RREGRNMLGLNIAQKELLSVIII*IISWAW Trigger: CCACGCCCAGCTGATTATCCATATAATTATAACACT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR TCA 72 bp	TCAGAATCGCACGAAGCTAGGAGGTGGAGGGTGCCGTaGGCTCAGATCACACCACTGTACTCCAGCCTCAGC	+
Preference number: 3 (lower is better) Translates to: SESHEARRWRVP*AQITPLYSSLS Trigger: GCTGAGGCTGGAGTACAGTGGTGTGATCTGAGCTCACGGCACCCTCCACCTCCTAGCTTCGTGCGATTCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR GCA 72 bp	AAGCATCAGAATCGCACGAAGCTAGGAGGTGGAGGGTaGCGTGAGCTCAGATCACACCACTGTACTCCAGCC	+
Preference number: 3 (lower is better) Translates to: KHQNRTKLGGGG*RELRSHHCTPA Trigger: GGCTGGAGTACAGTGGTGTGATCTGAGCTCACGGCACCCTCCACCTCCTAGCTTCGTGCGATTCTGATGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR-3UTR CAA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAGGCAAGAGAATCACTaGAACCTGGGGGATGGAAGT	+
Preference number: 3 (lower is better) Translates to: RREGRNMLGLNIAQKELLRQENH*NLGDGS Trigger: ACTTCCATCCCCCAGGTTCAAGTGATTCTCTTGCCT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000321331.12
3UTR TCA 72 bp	CTCTTGAAGCCAGGAGTTCAAGATCATCCAACATGGTaGAACCTCGCCTTTACTAAAAACACAAAAATTAGC	+
Preference number: 3 (lower is better) Translates to: LLKPGVQDHPTW*NLAFTKNTKIS Trigger: GCTAATTTTTGTGTTTTTAGTAAAGGCGAGGTTTCACCATGTTGGATGATCTTGAACTCCTGGCTTCAAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000321331.12
CDS-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGCAGCTAAAGCTAAGCTaGCAAGTCAAAGAGAAGTAT	+
Preference number: 4 (lower is better) Translates to: RREGRNMLGLNIAQKELLQLKLS*QVKEKY Trigger: ATACTTCTCTTTGACTTGTCAGCTTAGCTTTAGCTG...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
CDS-3UTR TCA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAAAGTGGAAGTTCACTaGTACAATAATAGTTGGGCA	+
Preference number: 4 (lower is better) Translates to: RREGRNMLGLNIAQKELLKVEVH*YNNSWA Trigger: TGCCCAACTATTATTGTATCAGTGAACTTCCACTTT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12
CDS GCA 90 bp	CCGAAGGACCCTAGGCCTCGGCTCCCGACTCCTCTCATCCGCCCATaGTCGAGGCCGGGCCTGAGCCCCGGCAACTCCACCTCTCCTCCC	+
Preference number: 5 (lower is better) Translates to: PKDPRPRLPTPLIRP*SRPGLSPGNSTSPP Trigger: GGGAGGAGAGGTGGAGTTGCCGGGGCTCAGGCCCGGCCTCGAGCATGGGCGGATGAGAGGAGTCGGGAGCCGAGGCCTAGGGTCCTTCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452906.3
CDS TCA 90 bp	CTCGGCTCCCGACTCCTCTCATCCGCCCATGCTCGAGGCCGGGCCTaGGCCCCGGCAACTCCACCTCTCCTCCCTCATTCGAGACACGGA	+
Preference number: 5 (lower is better) Translates to: LGSRLLSSAHARGRA*APATPPLLPHSRHG Trigger: TCCGTGTCTCGAATGAGGGAGGAGAGGTGGAGTTGCCGGGGCTCAGGCCCGGCCTCGAGCATGGGCGGATGAGAGGAGTCGGGAGCCGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452906.3
CDS-3UTR CAA 90 bp	AGGAGGGAAGGAAGAAATATGCTAGGCTTAAATATTGCTCAAAAGGAATTATTGAGGCAGATAGATCTCTaGAAGCCAGGAGTTCAAGAT	+
Preference number: 5 (lower is better) Translates to: RREGRNMLGLNIAQKELLRQIDL*KPGVQD Trigger: ATCTTGAACTCCTGGCTTCAAGAGATCTATCTGCCT...CAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000321331.12