RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HIF1A (Homo sapiens)

Ensembl gene IDs: ENSG00000100644

Ensembl transcript IDs: ENST00000323441.10, ENST00000337138.9, ENST00000394997.5, ENST00000539097.2, ENST00000553999.5, ENST00000555014.1, ENST00000556237.1, ENST00000556827.1, ENST00000557206.1, ENST00000557446.5, ENST00000557538.5

Found 311 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCCACTTTCATCCATTaGTTGCCCCAGCAGTCTACA +
Preference number: 2 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSTFIH*LPQQST
Trigger: TGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000323441.10
3UTR-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACTTGATCCAAAGCTCTaGGTAATTCTTCACCCTGCA +
Preference number: 2 (lower is better)
Translates to: LPMIMMKGYCLLTKIILALDPKL*VILHPA
Trigger: TGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000323441.10
3UTR-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTTCACAATCATAACTaGTCAGCTGTGGTAATCCAC +
Preference number: 2 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLHNHN*SAVVIH
Trigger: GTGGATTACCACAGCTGACCAGTTATGATTGTGAAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
3UTR-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAAAGGGGATCAAAATTaGACTAACCAAGTTTGTGCA +
Preference number: 2 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCKGDQN*TNQVCA
Trigger: TGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
3UTR-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAAAGGGGATCAAAATTaGACTAACCAAGTTTGTGCA +
Preference number: 2 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLKGDQN*TNQVCA
Trigger: TGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
3UTR-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAAAATGAGCTGTCTGTaGTCCAGCATTAAAGAACAT +
Preference number: 2 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLKMSCL*SSIKEH
Trigger: ATGTTCTTTAATGCTGGATCACAGACAGCTCATTTT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
3UTR-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTATCCACTTTCATCCATaGATTGCCCCAGCAGTCTAC +
Preference number: 3 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCIHFHP*IAPAVY
Trigger: GTAGACTGCTGGGGCAATCAATGGATGAAAGTGGAT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACGGCGCCCTCCATGGTaGATCGGTCCCCGCGATGTC +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRRRPPW*IGPRDV
Trigger: GACATCGCGGGGACCGATTCACCATGGAGGGCGCCG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGAGCCTCTCCTCAGGTaGCTTGTCAGGGCCCAGCCC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQEPLLR*LVRAQP
Trigger: GGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCGGCGCCCTCCATGGTaGATCGGTCCCCGCGATGTC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLRRPPW*IGPRDV
Trigger: GACATCGCGGGGACCGATTCACCATGGAGGGCGCCG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACGGCGCCCTCCATGGTaGATCGGTCCCCGCGATGTC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILARRPPW*IGPRDV
Trigger: GACATCGCGGGGACCGATTCACCATGGAGGGCGCCG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAGTCCAGAGGTGGGGGTaGGAGGCGGGAAACCCCTCG +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAVQRWG*EAGNPS
Trigger: CGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGAC...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGTCCAGAGGTGGGGGTaGGAGGCGGGAAACCCCTCG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLVQRWG*EAGNPS
Trigger: CGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGAC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACCCAGCCCGACACACTaGCCGAAGCGACGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRPSPTH*PKRRRG
Trigger: CCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTCCGGCCTAAGCGCTaGCTCCCTCCACACGCGGAG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLRPKR*LPPHAE
Trigger: CTCCGCGTGTGGAGGGAGCCAGCGCTTAGGCCGGAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCCCAGCCCGACACACTaGCCGAAGCGACGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYPSPTH*PKRRRG
Trigger: CCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGAGCCTCTCCTCAGGTaGCTTGTCAGGGCCCAGCCC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLEPLLR*LVRAQP
Trigger: GGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAAGCGACGAAGAGGGTaGTCCTCCTGTCCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYKRRRG*SSCPLR
Trigger: TCTGAGGGGACAGGAGGATCACCCTCTTCGTCGCTT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000337138.9
CDS-3UTR TCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCATTGGTATCATATACGTaGATGTGGCCTGTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSLVSYT*MWPVQC
Trigger: GCACTGCACAGGCCACATTCACGTATATGATACCAA...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR GCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTGTGCTTTGAGGACTTaGGCTTTCAGGGCTTGCGGA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQCALRT*AFRACG
Trigger: TCCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTGTGCTTTGAGGACTTaGGCTTTCAGGGCTTGCGGA +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCCALRT*AFRACG
Trigger: TCCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCAAGTAATTCTTCACCCTaGAGTAGGTTTCTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSSNSSP*SRFLLP
Trigger: AGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACT...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR CCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCACACATTATGTGGAAGTaGCAACTGATGAGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSHIMWK*QLMSKL
Trigger: GAGCTTGCTCATCAGTTGCCACTTCCACATAATGTG...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGAGCACTACTTCGAAGTaGCTTTGGCGTTTCAGCGGT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSTTSK*LWRFSG
Trigger: ACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCATATATTGTGCAATTGTaGCTACCACGTACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSYIVQL*LPRTAG
Trigger: GCCAGCAGTACGTGGTAGCCACAATTGCACAATATA...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGATGCAACTTCTTGATTaGGTGCAGGGTCAGCACTAC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQMQLLD*VQGQHY
Trigger: GTAGTGCTGACCCTGCACTCAATCAAGAAGTTGCAT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAACTGTAACTGTGCTTTaGGGACTTGCGCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRTVTVL*GLALSG
Trigger: CCCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGATGTGGCCTGTGCAGTaGAATACCTTCCATGTTGCA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQMWPVQ*NTFHVA
Trigger: TGCAACATGGAAGGTATTGCACTGCACAGGCCACAT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCGTGAATGTGGCCTGTaGAGTGCAATACCTTCCATG +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCRECGL*SAIPSM
Trigger: CATGGAAGGTATTGCACTGCACAGGCCACATTCACG...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACGTGAATGTGGCCTGTaGAGTGCAATACCTTCCATG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRRECGL*SAIPSM
Trigger: CATGGAAGGTATTGCACTGCACAGGCCACATTCACG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGTGCTTTGAGGACTTaGGCTTTCAGGGCTTGCGGA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYCALRT*AFRACG
Trigger: TCCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTACTTCGCCGAGATCTaGCTGCATCTCGAGACTTTT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQYFAEI*LHLETF
Trigger: AAAAGTCTCGAGATGCAGCCAGATCTCGGCGAAGTA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATTGGCGTTTCAGCGGTaGGTAATGGAGACATTGCCA +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRLAFQR*VMETLP
Trigger: TGGCAATGTCTCCATTACCCACCGCTGAAACGCCAA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAAGCACTACTTCGAAGTaGCTTTGGCGTTTCAGCGGT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRSTTSK*LWRFSG
Trigger: ACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCACTTCACAATCATAACTaGTCAGCTGTGGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSLHNHN*SAVVIH
Trigger: GTGGATTACCACAGCTGACCAGTTATGATTGTGAAG...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTTGGTATCATATACGTaGATGTGGCCTGTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCLVSYT*MWPVQC
Trigger: GCACTGCACAGGCCACATTCACGTATATGATACCAA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTATGCAACTTCTTGATTaGGTGCAGGGTCAGCACTAC +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCMQLLD*VQGQHY
Trigger: GTAGTGCTGACCCTGCACTCAATCAAGAAGTTGCAT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGACTATTAGGCTCAGGTaGACTTTGTCTAGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQTIRLR*TLSSAS
Trigger: GGAAGCACTAGACAAAGTTCACCTGAGCCTAATAGT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAACTGTAACTGTGCTTTaGGGACTTGCGCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILATVTVL*GLALSG
Trigger: CCCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAACTGTAACTGTGCTTTaGGGACTTGCGCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLTVTVL*GLALSG
Trigger: CCCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCAGTAGGTTCTTGTATTTaGGTCTGCTGGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSVGSCI*VCWNTV
Trigger: TACAGTATTCCAGCAGACTCAAATACAAGAACCTAC...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCTTGATCCAAAGCTCTaGGTAATTCTTCACCCTGCA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQLDPKL*VILHPA
Trigger: TGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTATGTGGCCTGTGCAGTaGAATACCTTCCATGTTGCA +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCMWPVQ*NTFHVA
Trigger: TGCAACATGGAAGGTATTGCACTGCACAGGCCACAT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCGTGAATGTGGCCTGTaGAGTGCAATACCTTCCATG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLRECGL*SAIPSM
Trigger: CATGGAAGGTATTGCACTGCACAGGCCACATTCACG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCGTGAATGTGGCCTGTaGAGTGCAATACCTTCCATG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYRECGL*SAIPSM
Trigger: CATGGAAGGTATTGCACTGCACAGGCCACATTCACG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCAGGGCTTGCGGAACTaGTTTCTAATGGTGACAACT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCQGLRN*FLMVTT
Trigger: AGTTGTCACCATTAGAAAGCAGTTCCGCAAGCCCTG...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACAGGGCTTGCGGAACTaGTTTCTAATGGTGACAACT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRQGLRN*FLMVTT
Trigger: AGTTGTCACCATTAGAAAGCAGTTCCGCAAGCCCTG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTACTTCGCCGAGATCTaGCTGCATCTCGAGACTTTT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCYFAEI*LHLETF
Trigger: AAAAGTCTCGAGATGCAGCCAGATCTCGGCGAAGTA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCACATTATGTGGAAGTaGCAACTGATGAGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQHIMWK*QLMSKL
Trigger: GAGCTTGCTCATCAGTTGCCACTTCCACATAATGTG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGACTTCCTCAAGTTGCTaGTCATCAGTTTCTGTGTCG +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQTSSSC*SSVSVS
Trigger: CGACACAGAAACTGATGACCAGCAACTTGAGGAAGT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATTGGCGTTTCAGCGGTaGGTAATGGAGACATTGCCA +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILALAFQR*VMETLP
Trigger: TGGCAATGTCTCCATTACCCACCGCTGAAACGCCAA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGGCGTTTCAGCGGTaGGTAATGGAGACATTGCCA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLAFQR*VMETLP
Trigger: TGGCAATGTCTCCATTACCCACCGCTGAAACGCCAA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTTGGCGTTTCAGCGGTaGGTAATGGAGACATTGCCA +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLLAFQR*VMETLP
Trigger: TGGCAATGTCTCCATTACCCACCGCTGAAACGCCAA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAGCACTACTTCGAAGTaGCTTTGGCGTTTCAGCGGT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSTTSK*LWRFSG
Trigger: ACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAGCACTACTTCGAAGTaGCTTTGGCGTTTCAGCGGT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSTTSK*LWRFSG
Trigger: ACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCGAAGGAACGTAACTaGAAGTCATCATCCATTGGG +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSKERN*KSSSIG
Trigger: CCCAATGGATGATGACTTCCAGTTACGTTCCTTCGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGGTATCATATACGTaGATGTGGCCTGTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLVSYT*MWPVQC
Trigger: GCACTGCACAGGCCACATTCACGTATATGATACCAA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTTGGTATCATATACGTaGATGTGGCCTGTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLLVSYT*MWPVQC
Trigger: GCACTGCACAGGCCACATTCACGTATATGATACCAA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTTCTTATACCCACACTaGGGTTGGTTACTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQFLYPH*GWLLLV
Trigger: TACCAACAGTAACCAACCTCAGTGTGGGTATAAGAA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATATGCAACTTCTTGATTaGGTGCAGGGTCAGCACTAC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYMQLLD*VQGQHY
Trigger: GTAGTGCTGACCCTGCACTCAATCAAGAAGTTGCAT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAACTATTAGGCTCAGGTaGACTTTGTCTAGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRTIRLR*TLSSAS
Trigger: GGAAGCACTAGACAAAGTTCACCTGAGCCTAATAGT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTCTAATGGTGACAACTaGTCGAAGGAACGTAACTGG +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCSNGDN*SKERNW
Trigger: CCAGTTACGTTCCTTCGATCAGTTGTCACCATTAGA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCCACTTTCATCCATTaGTTGCCCCAGCAGTCTACA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSTFIH*LPQQST
Trigger: TGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATCCACTTTCATCCATTaGTTGCCCCAGCAGTCTACA +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASTFIH*LPQQST
Trigger: TGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCCACTTTCATCCATTaGTTGCCCCAGCAGTCTACA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSTFIH*LPQQST
Trigger: TGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACTTGATCCAAAGCTCTaGGTAATTCTTCACCCTGCA +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRLDPKL*VILHPA
Trigger: TGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCGCCGAGATCTGGCTaGATCTCGAGACTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSPRSG*ISRLFF
Trigger: AAAGAAAAGTCTCGAGATGCAGCCAGATCTCGGCGA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTCGCCGAGATCTGGCTaGATCTCGAGACTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSPRSG*ISRLFF
Trigger: AAAGAAAAGTCTCGAGATGCAGCCAGATCTCGGCGA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATCGCCGAGATCTGGCTaGATCTCGAGACTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASPRSG*ISRLFF
Trigger: AAAGAAAAGTCTCGAGATGCAGCCAGATCTCGGCGA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGAGGCCTTATCAAGATaGGAACTCACATTATGTGGA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQEALSR*ELTLCG
Trigger: TCCACATAATGTGAGTTCGCATCTTGATAAGGCCTC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTATGTGGCCTGTGCAGTaGAATACCTTCCATGTTGCA +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLMWPVQ*NTFHVA
Trigger: TGCAACATGGAAGGTATTGCACTGCACAGGCCACAT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAACTTCTTGATTGAGTaGAGGGTCAGCACTACTTCG +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCNFLIE*RVSTTS
Trigger: CGAAGTAGTGCTGACCCTGCACTCAATCAAGAAGTT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACAGGGCTTGCGGAACTaGTTTCTAATGGTGACAACT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAQGLRN*FLMVTT
Trigger: AGTTGTCACCATTAGAAAGCAGTTCCGCAAGCCCTG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCAGGGCTTGCGGAACTaGTTTCTAATGGTGACAACT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYQGLRN*FLMVTT
Trigger: AGTTGTCACCATTAGAAAGCAGTTCCGCAAGCCCTG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATACTTCGCCGAGATCTaGCTGCATCTCGAGACTTTT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAYFAEI*LHLETF
Trigger: AAAAGTCTCGAGATGCAGCCAGATCTCGGCGAAGTA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACAAGCAGGTCATAGGTaGTTTCTTATACCCACACTG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRQAGHR*FLIPTL
Trigger: CAGTGTGGGTATAAGAAACCACCTATGACCTGCTTG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAACTTCCTCAAGTTGCTaGTCATCAGTTTCTGTGTCG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRTSSSC*SSVSVS
Trigger: CGACACAGAAACTGATGACCAGCAACTTGAGGAAGT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGTCCTGAGTAGAAAATaGGTTCTTTGCTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQVLSRK*VLCFCV
Trigger: GACACAGAAGCAAAGAACCCATTTTCTACTCAGGAC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCTTCACAATCATAACTaGTCAGCTGTGGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQLHNHN*SAVVIH
Trigger: GTGGATTACCACAGCTGACCAGTTATGATTGTGAAG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATATATTGTGCAATTGTaGCTACCACGTACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRYIVQL*LPRTAG
Trigger: GCCAGCAGTACGTGGTAGCCACAATTGCACAATATA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTATATTGTGCAATTGTaGCTACCACGTACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCYIVQL*LPRTAG
Trigger: GCCAGCAGTACGTGGTAGCCACAATTGCACAATATA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCATGGTCACATGGATaGGTAAAATCAAACACACTG +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSWSHG*VKSNTL
Trigger: CAGTGTGTTTGATTTTACTCATCCATGTGACCATGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATTCTTATACCCACACTaGGGTTGGTTACTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRFLYPH*GWLLLV
Trigger: TACCAACAGTAACCAACCTCAGTGTGGGTATAAGAA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCAATATTTGATGGGTaGGGAATGGGTTCACAAATC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSIFDG*GMGSQI
Trigger: GATTTGTGAACCCATTCCTCACCCATCAAATATTGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACAAAATCTAAAGATATaGTTGTGTCTCCAGCGGCTG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRQNLKI*LCLQRL
Trigger: CAGCCGCTGGAGACACAATCATATCTTTAGATTTTG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTTTAATGCAACTTCTTaGTTGAGTGCAGGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCFNATS*LSAGSA
Trigger: TGCTGACCCTGCACTCAATCAAGAAGTTGCATTAAA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAACTATTAGGCTCAGGTaGACTTTGTCTAGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLTIRLR*TLSSAS
Trigger: GGAAGCACTAGACAAAGTTCACCTGAGCCTAATAGT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACTATTAGGCTCAGGTaGACTTTGTCTAGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYTIRLR*TLSSAS
Trigger: GGAAGCACTAGACAAAGTTCACCTGAGCCTAATAGT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCTAATGGTGACAACTaGTCGAAGGAACGTAACTGG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSNGDN*SKERNW
Trigger: CCAGTTACGTTCCTTCGATCAGTTGTCACCATTAGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTAATGGTGACAACTaGTCGAAGGAACGTAACTGG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSNGDN*SKERNW
Trigger: CCAGTTACGTTCCTTCGATCAGTTGTCACCATTAGA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGATTTTTCGCTTTCTCTaGGCATTCTGCAAAGCTAGT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQIFRFL*AFCKAS
Trigger: ACTAGCTTTGCAGAATGCTCAGAGAAAGCGAAAAAT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACTTGATCCAAAGCTCTaGGTAATTCTTCACCCTGCA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLDPKL*VILHPA
Trigger: TGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTTGATCCAAAGCTCTaGGTAATTCTTCACCCTGCA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLDPKL*VILHPA
Trigger: TGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAGAGGCCTTATCAAGATaGGAACTCACATTATGTGGA +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCREALSR*ELTLCG
Trigger: TCCACATAATGTGAGTTCGCATCTTGATAAGGCCTC...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGGTACTTCCTCAAGTTaGTGGTCATCAGTTTCTGTG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLGTSSS*WSSVSV
Trigger: CACAGAAACTGATGACCAGCAACTTGAGGAAGTACC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAGGTACTTCCTCAAGTTaGTGGTCATCAGTTTCTGTG +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAGTSSS*WSSVSV
Trigger: CACAGAAACTGATGACCAGCAACTTGAGGAAGTACC...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGGTACTTCCTCAAGTTaGTGGTCATCAGTTTCTGTG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYGTSSS*WSSVSV
Trigger: CACAGAAACTGATGACCAGCAACTTGAGGAAGTACC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAACTTCTTGATTGAGTaGAGGGTCAGCACTACTTCG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYNFLIE*RVSTTS
Trigger: CGAAGTAGTGCTGACCCTGCACTCAATCAAGAAGTT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAACTTCTTGATTGAGTaGAGGGTCAGCACTACTTCG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLNFLIE*RVSTTS
Trigger: CGAAGTAGTGCTGACCCTGCACTCAATCAAGAAGTT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTAGTAATTCTTCACCCTaGAGTAGGTTTCTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSNSSP*SRFLLP
Trigger: AGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAGTAATTCTTCACCCTaGAGTAGGTTTCTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASNSSP*SRFLLP
Trigger: AGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAGTAATTCTTCACCCTaGAGTAGGTTTCTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSNSSP*SRFLLP
Trigger: AGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAGTGGCTACCACGTACTaGTGGCAAAGCATTATTATT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRVATTY*WQSIII
Trigger: AATAATAATGCTTTGCCAGCAGTACGTGGTAGCCAC...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCACATTATGTGGAAGTaGCAACTGATGAGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYHIMWK*QLMSKL
Trigger: GAGCTTGCTCATCAGTTGCCACTTCCACATAATGTG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACGAACTCACATTATGTaGAAGTGGCAACTGATGAGC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILARTHIM*KWQLMS
Trigger: GCTCATCAGTTGCCACTTCCACATAATGTGAGTTCG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCGAACTCACATTATGTaGAAGTGGCAACTGATGAGC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLRTHIM*KWQLMS
Trigger: GCTCATCAGTTGCCACTTCCACATAATGTGAGTTCG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACGAACTCACATTATGTaGAAGTGGCAACTGATGAGC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLRTHIM*KWQLMS
Trigger: GCTCATCAGTTGCCACTTCCACATAATGTGAGTTCG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACAAGCAGGTCATAGGTaGTTTCTTATACCCACACTG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLQAGHR*FLIPTL
Trigger: CAGTGTGGGTATAAGAAACCACCTATGACCTGCTTG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCAAGCAGGTCATAGGTaGTTTCTTATACCCACACTG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLQAGHR*FLIPTL
Trigger: CAGTGTGGGTATAAGAAACCACCTATGACCTGCTTG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCAAGCAGGTCATAGGTaGTTTCTTATACCCACACTG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYQAGHR*FLIPTL
Trigger: CAGTGTGGGTATAAGAAACCACCTATGACCTGCTTG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCATATCCACCTCTTTTaGCAAGCATCCTGTACTGTC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYHIHLF*QASCTV
Trigger: GACAGTACAGGATGCTTGCCAAAAGAGGTGGATATG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACATATCCACCTCTTTTaGCAAGCATCCTGTACTGTC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLHIHLF*QASCTV
Trigger: GACAGTACAGGATGCTTGCCAAAAGAGGTGGATATG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACATATCCACCTCTTTTaGCAAGCATCCTGTACTGTC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAHIHLF*QASCTV
Trigger: GACAGTACAGGATGCTTGCCAAAAGAGGTGGATATG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACTTCCTCAAGTTGCTaGTCATCAGTTTCTGTGTCG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYTSSSC*SSVSVS
Trigger: CGACACAGAAACTGATGACCAGCAACTTGAGGAAGT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAACTTCCTCAAGTTGCTaGTCATCAGTTTCTGTGTCG +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILATSSSC*SSVSVS
Trigger: CGACACAGAAACTGATGACCAGCAACTTGAGGAAGT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCTGTAATTTTTCGTTaGGTGAGGGGAGCATTACAT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSVIFR*VRGALH
Trigger: ATGTAATGCTCCCCTCACCCAACGAAAAATTACAGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTCGAAGGAACGTAACTaGAAGTCATCATCCATTGGG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSKERN*KSSSIG
Trigger: CCCAATGGATGATGACTTCCAGTTACGTTCCTTCGA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCGAAGGAACGTAACTaGAAGTCATCATCCATTGGG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSKERN*KSSSIG
Trigger: CCCAATGGATGATGACTTCCAGTTACGTTCCTTCGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCATATGTGGGTAGGAGATaGAGATGCAATCAATATTTT +
Preference number: 4 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSYVGRR*RCNQYF
Trigger: AAAATATTGATTGCATCTCCATCTCCTACCCACATA...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACACGTTAGGGCTTCTTaGATGAGATTTTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRHVRAS*MRFFCL
Trigger: CAGACAGAAAAATCTCATCCAAGAAGCCCTAACGTG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACTTCACAATCATAACTaGTCAGCTGTGGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRLHNHN*SAVVIH
Trigger: GTGGATTACCACAGCTGACCAGTTATGATTGTGAAG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCTTCACAATCATAACTaGTCAGCTGTGGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCLHNHN*SAVVIH
Trigger: GTGGATTACCACAGCTGACCAGTTATGATTGTGAAG...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTATATTGTGCAATTGTaGCTACCACGTACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYYIVQL*LPRTAG
Trigger: GCCAGCAGTACGTGGTAGCCACAATTGCACAATATA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTCATGGTCACATGGATaGGTAAAATCAAACACACTG +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCSWSHG*VKSNTL
Trigger: CAGTGTGTTTGATTTTACTCATCCATGTGACCATGA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATTCTTATACCCACACTaGGGTTGGTTACTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAFLYPH*GWLLLV
Trigger: TACCAACAGTAACCAACCTCAGTGTGGGTATAAGAA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTTCTTATACCCACACTaGGGTTGGTTACTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYFLYPH*GWLLLV
Trigger: TACCAACAGTAACCAACCTCAGTGTGGGTATAAGAA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAAAATCAAGTCGTGCTaGATAATACCACTCACAACG +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCKIKSC*IIPLTT
Trigger: CGTTGTGAGTGGTATTATTCAGCACGACTTGATTTT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAAAAATCAAGTCGTGCTaGATAATACCACTCACAACG +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRKIKSC*IIPLTT
Trigger: CGTTGTGAGTGGTATTATTCAGCACGACTTGATTTT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCTGATTCAACTTTGGTaGATAGCTGAGTCATTTTCA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQLIQLW*IAESFS
Trigger: TGAAAATGACTCAGCTATTCACCAAAGTTGAATCAG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACAAAATCTAAAGATATaGTTGTGTCTCCAGCGGCTG +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAQNLKI*LCLQRL
Trigger: CAGCCGCTGGAGACACAATCATATCTTTAGATTTTG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCAAAATCTAAAGATATaGTTGTGTCTCCAGCGGCTG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLQNLKI*LCLQRL
Trigger: CAGCCGCTGGAGACACAATCATATCTTTAGATTTTG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTTTAATGCAACTTCTTaGTTGAGTGCAGGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYFNATS*LSAGSA
Trigger: TGCTGACCCTGCACTCAATCAAGAAGTTGCATTAAA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTTAATGCAACTTCTTaGTTGAGTGCAGGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLFNATS*LSAGSA
Trigger: TGCTGACCCTGCACTCAATCAAGAAGTTGCATTAAA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGGAACTGTAGTTCTTTaGCTCAAAGCGACAGATAAC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLGTVVL*LKATDN
Trigger: GTTATCTGTCGCTTTGAGTCAAAGAACTACAGTTCC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGGAACTGTAGTTCTTTaGCTCAAAGCGACAGATAAC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYGTVVL*LKATDN
Trigger: GTTATCTGTCGCTTTGAGTCAAAGAACTACAGTTCC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGGAACTGTAGTTCTTTaGCTCAAAGCGACAGATAAC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLGTVVL*LKATDN
Trigger: GTTATCTGTCGCTTTGAGTCAAAGAACTACAGTTCC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAGGAACTGTAGTTCTTTaGCTCAAAGCGACAGATAAC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAGTVVL*LKATDN
Trigger: GTTATCTGTCGCTTTGAGTCAAAGAACTACAGTTCC...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGAAAGGGGATCAAAATTaGACTAACCAAGTTTGTGCA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQKGDQN*TNQVCA
Trigger: TGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGAGGCCTTATCAAGATaGGAACTCACATTATGTGGA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLEALSR*ELTLCG
Trigger: TCCACATAATGTGAGTTCGCATCTTGATAAGGCCTC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGAGGCCTTATCAAGATaGGAACTCACATTATGTGGA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYEALSR*ELTLCG
Trigger: TCCACATAATGTGAGTTCGCATCTTGATAAGGCCTC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGTTATATATGACAGTTaGTTGAGTTTCAACCCAGAC +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQVIYDS*LSFNPD
Trigger: GTCTGGGTTGAAACTCAAGCAACTGTCATATATAAC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGTGGCTACCACGTACTaGTGGCAAAGCATTATTATT +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLVATTY*WQSIII
Trigger: AATAATAATGCTTTGCCAGCAGTACGTGGTAGCCAC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAGTGGCTACCACGTACTaGTGGCAAAGCATTATTATT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAVATTY*WQSIII
Trigger: AATAATAATGCTTTGCCAGCAGTACGTGGTAGCCAC...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGGCTACCACGTACTaGTGGCAAAGCATTATTATT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYVATTY*WQSIII
Trigger: AATAATAATGCTTTGCCAGCAGTACGTGGTAGCCAC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGAGGTTGGTTACTGTTaGTATCATATACGTGAATGT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQEVGYC*YHIREC
Trigger: ACATTCACGTATATGATACCAACAGTAACCAACCTC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTATCATGATGAGTTTTaGTCAGATGATCAGAGTCCA +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQYHDEF*SDDQSP
Trigger: TGGACTCTGATCATCTGACCAAAACTCATCATGATA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGACATACAATGCACTGTaGTTGAGAATTCTTGGTGTT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQTYNAL*LRILGV
Trigger: AACACCAAGAATTCTCAACCACAGTGCATTGTATGT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATCTGTAATTTTTCGTTaGGTGAGGGGAGCATTACAT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRSVIFR*VRGALH
Trigger: ATGTAATGCTCCCCTCACCCAACGAAAAATTACAGA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGTCCTGAGTAGAAAATaGGTTCTTTGCTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLVLSRK*VLCFCV
Trigger: GACACAGAAGCAAAGAACCCATTTTCTACTCAGGAC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCCTGAGTAGAAAATaGGTTCTTTGCTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYVLSRK*VLCFCV
Trigger: GACACAGAAGCAAAGAACCCATTTTCTACTCAGGAC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGTTTCTTTATGTATGTaGGTAGGAGATGGAGATGCA +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCVSLCM*VGDGDA
Trigger: TGCATCTCCATCTCCTACCCACATACATAAAGAAAC...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACACGTTAGGGCTTCTTaGATGAGATTTTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLHVRAS*MRFFCL
Trigger: CAGACAGAAAAATCTCATCCAAGAAGCCCTAACGTG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTACCACGTACTGCTaGCAAAGCATTATTATTTAT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQATTYC*QSIIIY
Trigger: ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCATGGTCACATGGATaGGTAAAATCAAACACACTG +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSWSHG*VKSNTL
Trigger: CAGTGTGTTTGATTTTACTCATCCATGTGACCATGA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCATGGTCACATGGATaGGTAAAATCAAACACACTG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSWSHG*VKSNTL
Trigger: CAGTGTGTTTGATTTTACTCATCCATGTGACCATGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCAATATTTGATGGGTaGGGAATGGGTTCACAAATC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSIFDG*GMGSQI
Trigger: GATTTGTGAACCCATTCCTCACCCATCAAATATTGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTCAATATTTGATGGGTaGGGAATGGGTTCACAAATC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSIFDG*GMGSQI
Trigger: GATTTGTGAACCCATTCCTCACCCATCAAATATTGA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAGGAATTTCAATATTTaGTGGGTGAGGAATGGGTTC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILARNFNI*WVRNGF
Trigger: GAACCCATTCCTCACCCATCAAATATTGAAATTCCT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAGGAATTTCAATATTTaGTGGGTGAGGAATGGGTTC +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLRNFNI*WVRNGF
Trigger: GAACCCATTCCTCACCCATCAAATATTGAAATTCCT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAGGAATTTCAATATTTaGTGGGTGAGGAATGGGTTC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYRNFNI*WVRNGF
Trigger: GAACCCATTCCTCACCCATCAAATATTGAAATTCCT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTACAATGCACTGTGGTTaGGAATTCTTGGTGTTATAT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCTMHCG*EFLVLY
Trigger: ATATAACACCAAGAATTCTCAACCACAGTGCATTGT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAACAATGCACTGTGGTTaGGAATTCTTGGTGTTATAT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRTMHCG*EFLVLY
Trigger: ATATAACACCAAGAATTCTCAACCACAGTGCATTGT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTAAAATCAAGTCGTGCTaGATAATACCACTCACAACG +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLKIKSC*IIPLTT
Trigger: CGTTGTGAGTGGTATTATTCAGCACGACTTGATTTT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAAAATCAAGTCGTGCTaGATAATACCACTCACAACG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYKIKSC*IIPLTT
Trigger: CGTTGTGAGTGGTATTATTCAGCACGACTTGATTTT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATCTAAATCTGTGTCCTaGGTAGAAAATGGGTTCTTT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRSKSVS*VENGFF
Trigger: AAAGAACCCATTTTCTACTCAGGACACAGATTTAGA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTCTAAATCTGTGTCCTaGGTAGAAAATGGGTTCTTT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCSKSVS*VENGFF
Trigger: AAAGAACCCATTTTCTACTCAGGACACAGATTTAGA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAGGTTCTTGTATTTaGGTCTGCTGGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYVGSCI*VCWNTV
Trigger: TACAGTATTCCAGCAGACTCAAATACAAGAACCTAC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGTAGGTTCTTGTATTTaGGTCTGCTGGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLVGSCI*VCWNTV
Trigger: TACAGTATTCCAGCAGACTCAAATACAAGAACCTAC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGTAGGTTCTTGTATTTaGGTCTGCTGGAATACTGTA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLVGSCI*VCWNTV
Trigger: TACAGTATTCCAGCAGACTCAAATACAAGAACCTAC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAATTTTTCGCTTTCTCTaGGCATTCTGCAAAGCTAGT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAIFRFL*AFCKAS
Trigger: ACTAGCTTTGCAGAATGCTCAGAGAAAGCGAAAAAT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAAAAGGGGATCAAAATTaGACTAACCAAGTTTGTGCA +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRKGDQN*TNQVCA
Trigger: TGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAAAAATGAGCTGTCTGTaGTCCAGCATTAAAGAACAT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRKMSCL*SSIKEH
Trigger: ATGTTCTTTAATGCTGGATCACAGACAGCTCATTTT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAAAATGAGCTGTCTGTaGTCCAGCATTAAAGAACAT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCKMSCL*SSIKEH
Trigger: ATGTTCTTTAATGCTGGATCACAGACAGCTCATTTT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCAATACCTTCCATGTTaGAGACTTTATGTTCATAGT +
Preference number: 4 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQQYLPC*RLYVHS
Trigger: ACTATGAACATAAAGTCTGCAACATGGAAGGTATTG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGTTATATATGACAGTTaGTTGAGTTTCAACCCAGAC +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCVIYDS*LSFNPD
Trigger: GTCTGGGTTGAAACTCAAGCAACTGTCATATATAAC...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGAGGTTGGTTACTGTTaGTATCATATACGTGAATGT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCEVGYC*YHIREC
Trigger: ACATTCACGTATATGATACCAACAGTAACCAACCTC...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCTGTAATTTTTCGTTaGGTGAGGGGAGCATTACAT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSVIFR*VRGALH
Trigger: ATGTAATGCTCCCCTCACCCAACGAAAAATTACAGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGTTTCTTTATGTATGTaGGTAGGAGATGGAGATGCA +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLVSLCM*VGDGDA
Trigger: TGCATCTCCATCTCCTACCCACATACATAAAGAAAC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGTTTCTTTATGTATGTaGGTAGGAGATGGAGATGCA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLVSLCM*VGDGDA
Trigger: TGCATCTCCATCTCCTACCCACATACATAAAGAAAC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTTCTTTATGTATGTaGGTAGGAGATGGAGATGCA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYVSLCM*VGDGDA
Trigger: TGCATCTCCATCTCCTACCCACATACATAAAGAAAC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCCAGTTAGTTCAAACTaGGTTAATCCCATGTATTTG +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYPVSSN*VNPMYL
Trigger: CAAATACATGGGATTAACTCAGTTTGAACTAACTGG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTATATGACAGTTGCTTaGGTTTCAACCCAGACATAT +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLYMTVA*VSTQTY
Trigger: ATATGTCTGGGTTGAAACTCAAGCAACTGTCATATA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATATATGACAGTTGCTTaGGTTTCAACCCAGACATAT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLYMTVA*VSTQTY
Trigger: ATATGTCTGGGTTGAAACTCAAGCAACTGTCATATA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATATATGACAGTTGCTTaGGTTTCAACCCAGACATAT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAYMTVA*VSTQTY
Trigger: ATATGTCTGGGTTGAAACTCAAGCAACTGTCATATA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAACAATGCACTGTGGTTaGGAATTCTTGGTGTTATAT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILATMHCG*EFLVLY
Trigger: ATATAACACCAAGAATTCTCAACCACAGTGCATTGT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACTGATTCAACTTTGGTaGATAGCTGAGTCATTTTCA +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLIQLW*IAESFS
Trigger: TGAAAATGACTCAGCTATTCACCAAAGTTGAATCAG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTGATTCAACTTTGGTaGATAGCTGAGTCATTTTCA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLIQLW*IAESFS
Trigger: TGAAAATGACTCAGCTATTCACCAAAGTTGAATCAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTCTAAATCTGTGTCCTaGGTAGAAAATGGGTTCTTT +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSKSVS*VENGFF
Trigger: AAAGAACCCATTTTCTACTCAGGACACAGATTTAGA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCTAAATCTGTGTCCTaGGTAGAAAATGGGTTCTTT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSKSVS*VENGFF
Trigger: AAAGAACCCATTTTCTACTCAGGACACAGATTTAGA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAAAGGGGATCAAAATTaGACTAACCAAGTTTGTGCA +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAKGDQN*TNQVCA
Trigger: TGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR TCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAAAATGAGCTGTCTGTaGTCCAGCATTAAAGAACAT +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAKMSCL*SSIKEH
Trigger: ATGTTCTTTAATGCTGGATCACAGACAGCTCATTTT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACAATACCTTCCATGTTaGAGACTTTATGTTCATAGT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRQYLPC*RLYVHS
Trigger: ACTATGAACATAAAGTCTGCAACATGGAAGGTATTG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGTTATATATGACAGTTaGTTGAGTTTCAACCCAGAC +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLVIYDS*LSFNPD
Trigger: GTCTGGGTTGAAACTCAAGCAACTGTCATATATAAC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCAGTTTCTGTGTCGTTaGTGCCAAAATCTAAAGATA +
Preference number: 4 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLQFLCR*CQNLKI
Trigger: TATCTTTAGATTTTGGCAGCAACGACACAGAAACTG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCAGTTTCTGTGTCGTTaGTGCCAAAATCTAAAGATA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYQFLCR*CQNLKI
Trigger: TATCTTTAGATTTTGGCAGCAACGACACAGAAACTG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAGGTAGGAGATGGAGATaGAATCAATATTTTAATGTC +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRGRRWR*NQYFNV
Trigger: GACATTAAAATATTGATTGCATCTCCATCTCCTACC...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTATCATGATGAGTTTTaGTCAGATGATCAGAGTCCA +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYYHDEF*SDDQSP
Trigger: TGGACTCTGATCATCTGACCAAAACTCATCATGATA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATATCATGATGAGTTTTaGTCAGATGATCAGAGTCCA +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAYHDEF*SDDQSP
Trigger: TGGACTCTGATCATCTGACCAAAACTCATCATGATA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAACATACAATGCACTGTaGTTGAGAATTCTTGGTGTT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLTYNAL*LRILGV
Trigger: AACACCAAGAATTCTCAACCACAGTGCATTGTATGT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACATACAATGCACTGTaGTTGAGAATTCTTGGTGTT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYTYNAL*LRILGV
Trigger: AACACCAAGAATTCTCAACCACAGTGCATTGTATGT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATATGTGGGTAGGAGATaGAGATGCAATCAATATTTT +
Preference number: 4 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRYVGRR*RCNQYF
Trigger: AAAATATTGATTGCATCTCCATCTCCTACCCACATA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTATGTGGGTAGGAGATaGAGATGCAATCAATATTTT +
Preference number: 4 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCYVGRR*RCNQYF
Trigger: AAAATATTGATTGCATCTCCATCTCCTACCCACATA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGCTACCACGTACTGCTaGCAAAGCATTATTATTTAT +
Preference number: 4 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLATTYC*QSIIIY
Trigger: ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGCTACCACGTACTGCTaGCAAAGCATTATTATTTAT +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYATTYC*QSIIIY
Trigger: ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAGGTAGGAGATGGAGATaGAATCAATATTTTAATGTC +
Preference number: 4 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAGRRWR*NQYFNV
Trigger: GACATTAAAATATTGATTGCATCTCCATCTCCTACC...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR GCA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGGTAGGAGATGGAGATaGAATCAATATTTTAATGTC +
Preference number: 4 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYGRRWR*NQYFNV
Trigger: GACATTAAAATATTGATTGCATCTCCATCTCCTACC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS CCA 90 bp CGGCAATCGCCGGGGTCCGGGCCCGGCTCCGAGCCTCTCCTCAGGTaGCTTGTCAGGGCCCAGCCCGACACACTGGCCGAAGCGACGAAG +
Preference number: 5 (lower is better)
Translates to: RQSPGSGPGSEPLLR*LVRAQPDTLAEATK
Trigger: CTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATTGCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000553999.5
ENST00000557446.5
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCTCTCCTCAGGTGGCTaGTCAGGGCCCAGCCCGACA +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCLSSGG*SGPSPT
Trigger: TGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAG...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCTCTCCTCAGGTGGCTaGTCAGGGCCCAGCCCGACA +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLLSSGG*SGPSPT
Trigger: TGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000337138.9
ENST00000394997.5
CDS-3UTR CAA 90 bp AATTCTTCACCCTGCAGTAGGTTTCTGCTGCCTTGTATAGGAGCATTAACTTCAGAACTTATCTTTTTCTaGTCGTTCGCGCCGCCGGCG +
Preference number: 5 (lower is better)
Translates to: NSSPCSRFLLPCIGALTSELIFF*SFAPPA
Trigger: CGCCGGCGGCGCGAACGACAAGAAAAAGATAAGTTC...TGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCTGTGCTTTGAGGACTaGCGCTTTCAGGGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQLCFED*RFQGLR
Trigger: CCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACAG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS TCA 90 bp AGTAATTCATTCCCCTTTTACTCACTCCAGCACACCCAAGAGATCTaGCACACACTACTCAGTAGCTGTGATTCCCTGAGTTGGCTGAAA +
Preference number: 5 (lower is better)
Translates to: SNSFPFYSLQHTQEI*HTLLSSCDSLSWLK
Trigger: TTTCAGCCAACTCAGGGAATCACAGCTACTGAGTAGTGTGTGTCAGATCTCTTGGGTGTGCTGGAGTGAGTAAAAGGGGAATGAATTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000556237.1
CDS CCA 90 bp TGGGTGAGGAATGGGTTCACAAATCAGCACCAAGCAGGTCATAGGTaGTTTCTTATACCCACACTGAGGTTGGTTACTGTTGGTATCATA +
Preference number: 5 (lower is better)
Translates to: WVRNGFTNQHQAGHR*FLIPTLRLVTVGII
Trigger: TATGATACCAACAGTAACCAACCTCAGTGTGGGTATAAGAAACCACCTATGACCTGCTTGGTGCTGATTTGTGAACCCATTCCTCACCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000556237.1
ENST00000557206.1
ENST00000557538.5
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTGTGCTTTGAGGACTaGCGCTTTCAGGGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLCFED*RFQGLR
Trigger: CCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCTGTGCTTTGAGGACTaGCGCTTTCAGGGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLLCFED*RFQGLR
Trigger: CCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACAG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGAACTTATCTTTTTCTaGTCGTTCGCGCCGCCGGCG +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYELIFF*SFAPPA
Trigger: CGCCGGCGGCGCGAACGACAAGAAAAAGATAAGTTC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000323441.10
ENST00000337138.9
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATACTTCGAAGTGGCTTaGGCGTTTCAGCGGTGGGTA +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRYFEVA*AFQRWV
Trigger: TACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTACTTCGAAGTGGCTTaGGCGTTTCAGCGGTGGGTA +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCYFEVA*AFQRWV
Trigger: TACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATCTTATCCTATTTTTCTaGTCGTTCGCGCCGCCGGCG +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLILFF*SFAPPA
Trigger: CGCCGGCGGCGCGAACGACAAGAAAAATAGGATAAG...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394997.5
CDS TCA 90 bp TCTATGACTCCTTTTCCTGCTCTGTTTGGTGAGGCTGTCCGACTTTaGGTATCTCTATATGGTGATGATGTGGCACTAGTAGTTTCTTTA +
Preference number: 5 (lower is better)
Translates to: SMTPFPALFGEAVRL*VSLYGDDVALVVSL
Trigger: TAAAGAAACTACTAGTGCCACATCATCACCATATAGAGATACTCAAAGTCGGACAGCCTCACCAAACAGAGCAGGAAAAGGAGTCATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATACTTCGAAGTGGCTTaGGCGTTTCAGCGGTGGGTA +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAYFEVA*AFQRWV
Trigger: TACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACTTCGAAGTGGCTTaGGCGTTTCAGCGGTGGGTA +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLYFEVA*AFQRWV
Trigger: TACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATTGCGCTTTCAGGGCTaGCGGAACTGCTTTCTAATG +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRLRFQG*RNCFLM
Trigger: CATTAGAAAGCAGTTCCGCAAGCCCTGAAAGCGCAA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTACTGTAACTGTGCTTaGAGGACTTGCGCTTTCAGG +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQYCNCA*RTCAFR
Trigger: CCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGTA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGACTTTTCCTGCTCTGTTaGGTGAGGCTGTCCGACTTT +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRLFLLC*VRLSDF
Trigger: AAAGTCGGACAGCCTCACCAAACAGAGCAGGAAAAG...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGATCCACTTTCATCCATaGATTGCCCCAGCAGTCTAC +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQIHFHP*IAPAVY
Trigger: GTAGACTGCTGGGGCAATCAATGGATGAAAGTGGAT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS GCA 90 bp GGTGAGGGGAGCATTACATCATTATATAATGGTACTTCCTCAAGTTaGTGGTCATCAGTTTCTGTGTCGTTGCTGCCAAAATCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: GEGSITSLYNGTSSS*WSSVSVSLLPKSKD
Trigger: ATCTTTAGATTTTGGCAGCAACGACACAGAAACTGATGACCAGCAACTTGAGGAAGTACCATTATATAATGATGTAATGCTCCCCTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTGGTACTTCCTCAAGTaGCTGGTCATCAGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQWYFLK*LVISFC
Trigger: ACAGAAACTGATGACCAGCAACTTGAGGAAGTACCA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTTGCGCTTTCAGGGCTaGCGGAACTGCTTTCTAATG +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYLRFQG*RNCFLM
Trigger: CATTAGAAAGCAGTTCCGCAAGCCCTGAAAGCGCAA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGCGCTTTCAGGGCTaGCGGAACTGCTTTCTAATG +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLRFQG*RNCFLM
Trigger: CATTAGAAAGCAGTTCCGCAAGCCCTGAAAGCGCAA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTACTGTAACTGTGCTTaGAGGACTTGCGCTTTCAGG +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCYCNCA*RTCAFR
Trigger: CCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGTA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCACTTTTCCTGCTCTGTTaGGTGAGGCTGTCCGACTTT +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILALFLLC*VRLSDF
Trigger: AAAGTCGGACAGCCTCACCAAACAGAGCAGGAAAAG...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTACTTTTCCTGCTCTGTTaGGTGAGGCTGTCCGACTTT +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLLFLLC*VRLSDF
Trigger: AAAGTCGGACAGCCTCACCAAACAGAGCAGGAAAAG...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTAC +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRIHFHP*IAPAVY
Trigger: GTAGACTGCTGGGGCAATCAATGGATGAAAGTGGAT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS GCA 90 bp TACAATGCACTGTGGTTGAGAATTCTTGGTGTTATATATGACAGTTaGTTGAGTTTCAACCCAGACATATCCACCTCTTTTGGCAAGCAT +
Preference number: 5 (lower is better)
Translates to: YNALWLRILGVIYDS*LSFNPDISTSFGKH
Trigger: ATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCTGTCCTGTGGTGACTaGTCCTTTAGTAAACATATC +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQLSCGD*SFSKHI
Trigger: GATATGTTTACTAAAGGACAAGTCACCACAGGACAG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTACATATCCACCTCTTTaGGCAAGCATCCTGTACTGT +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCTYPPL*ASILYC
Trigger: ACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTTCTGTAATTTTTCGTaGGGTGAGGGGAGCATTACA +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQFCNFS*GEGSIT
Trigger: TGTAATGCTCCCCTCACCCAACGAAAAATTACAGAA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACTGTAACTGTGCTTaGAGGACTTGCGCTTTCAGG +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLYCNCA*RTCAFR
Trigger: CCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGTA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTACTGTAACTGTGCTTaGAGGACTTGCGCTTTCAGG +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLYCNCA*RTCAFR
Trigger: CCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGTA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTAC +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAIHFHP*IAPAVY
Trigger: GTAGACTGCTGGGGCAATCAATGGATGAAAGTGGAT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATATCCACTTTCATCCATaGATTGCCCCAGCAGTCTAC +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYIHFHP*IAPAVY
Trigger: GTAGACTGCTGGGGCAATCAATGGATGAAAGTGGAT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGCTTCGCTGTGTGTTTaGTTCTTTACCCTTTTTCAC +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCASLCV*FFTLFH
Trigger: GTGAAAAAGGGTAAAGAACAAAACACACAGCGAAGC...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAATACCCACACTGAGGTaGGTTACTGTTGGTATCATA +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRIPTLR*VTVGII
Trigger: TATGATACCAACAGTAACCAACCTCAGTGTGGGTAT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCTGTCCTGTGGTGACTaGTCCTTTAGTAAACATATC +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCLSCGD*SFSKHI
Trigger: GATATGTTTACTAAAGGACAAGTCACCACAGGACAG...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATACATATCCACCTCTTTaGGCAAGCATCCTGTACTGT +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYTYPPL*ASILYC
Trigger: ACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACATATCCACCTCTTTaGGCAAGCATCCTGTACTGT +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLTYPPL*ASILYC
Trigger: ACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGTCAGTTTCTGTGTCGTaGCTGCCAAAATCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSVSVS*LPKSKD
Trigger: ATCTTTAGATTTTGGCAGCAACGACACAGAAACTGA...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTGGTACTTCCTCAAGTaGCTGGTCATCAGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLWYFLK*LVISFC
Trigger: ACAGAAACTGATGACCAGCAACTTGAGGAAGTACCA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGGTACTTCCTCAAGTaGCTGGTCATCAGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLWYFLK*LVISFC
Trigger: ACAGAAACTGATGACCAGCAACTTGAGGAAGTACCA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGGTACTTCCTCAAGTaGCTGGTCATCAGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYWYFLK*LVISFC
Trigger: ACAGAAACTGATGACCAGCAACTTGAGGAAGTACCA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGAGTAGGTTCTTGTATTaGAGTCTGCTGGAATACTGT +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQSRFLY*SLLEYC
Trigger: ACAGTATTCCAGCAGACTCAAATACAAGAACCTACT...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCAAAGCTAGTATCTTaGGATTTAGTTCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQAKLVS*DLVLPQ
Trigger: CTGAGGAAGAACTAAATCCAAAGATACTAGCTTTGC...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AGTAGAAAGGGGATCAAAATTGAACTAACCAAGTTTGTGCAGTATTGTAGCCAGCCAATTCTTCAGGTTTaGAGTTTCCTAGACCTTCTT +
Preference number: 5 (lower is better)
Translates to: SRKGIKIELTKFVQYCSQPILQV*SFLDLL
Trigger: AAGAAGGTCTAGGAAACTCAAAACCTGAAGAATTGG...CTGGCTACAATACTGCACAAACTTGGTTAGTTCAATTTTGATCCCCTTTCTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000539097.2
CDS GCA 90 bp TGTGGCACTAGTAGTTTCTTTATGTATGTGGGTAGGAGATGGAGATaGAATCAATATTTTAATGTCTTCCATACGGTCTTTTGTCACTGT +
Preference number: 5 (lower is better)
Translates to: CGTSSFFMYVGRRWR*NQYFNVFHTVFCHC
Trigger: ACAGTGACAAAAGACCGTATGGAAGACATTAAAATATTGATTGCATCTCCATCTCCTACCCACATACATAAAGAAACTACTAGTGCCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAATACCCACACTGAGGTaGGTTACTGTTGGTATCATA +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAIPTLR*VTVGII
Trigger: TATGATACCAACAGTAACCAACCTCAGTGTGGGTAT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATATACCCACACTGAGGTaGGTTACTGTTGGTATCATA +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYIPTLR*VTVGII
Trigger: TATGATACCAACAGTAACCAACCTCAGTGTGGGTAT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAATACCCACACTGAGGTaGGTTACTGTTGGTATCATA +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLIPTLR*VTVGII
Trigger: TATGATACCAACAGTAACCAACCTCAGTGTGGGTAT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTCTGTCCTGTGGTGACTaGTCCTTTAGTAAACATATC +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLLSCGD*SFSKHI
Trigger: GATATGTTTACTAAAGGACAAGTCACCACAGGACAG...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTA +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCGSFLS*SKRLLV
Trigger: TACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACC...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTTCAGTTTCTGTGTCGTaGCTGCCAAAATCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCSVSVS*LPKSKD
Trigger: ATCTTTAGATTTTGGCAGCAACGACACAGAAACTGA...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTTCTGTAATTTTTCGTaGGGTGAGGGGAGCATTACA +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYFCNFS*GEGSIT
Trigger: TGTAATGCTCCCCTCACCCAACGAAAAATTACAGAA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTCTGTAATTTTTCGTaGGGTGAGGGGAGCATTACA +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLFCNFS*GEGSIT
Trigger: TGTAATGCTCCCCTCACCCAACGAAAAATTACAGAA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAATTAGCAGTAGGTTCTaGTATTTGAGTCTGCTGGAA +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRISSRF*YLSLLE
Trigger: TTCCAGCAGACTCAAATACAAGAACCTACTGCTAAT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTAAATATATTGTGCAATaGTGGCTACCACGTACTGCT +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCKYIVQ*WLPRTA
Trigger: AGCAGTACGTGGTAGCCACAATTGCACAATATATTT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGAATATATGACAGTTGCTaGAGTTTCAACCCAGACATA +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRIYDSC*SFNPDI
Trigger: TATGTCTGGGTTGAAACTCAAGCAACTGTCATATAT...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTATATATGACAGTTGCTaGAGTTTCAACCCAGACATA +
Preference number: 5 (lower is better)
Translates to: ILCNCGYHVLLAKHYYLCIYDSC*SFNPDI
Trigger: TATGTCTGGGTTGAAACTCAAGCAACTGTCATATAT...ACATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GAACTAACCAAGTTTGTGCAGTATTGTAGCCAGGCTTCTAAAATTAGATGTAGATACAATGCACTGTGGTaGAGAATTCTTGGTGTTATA +
Preference number: 5 (lower is better)
Translates to: ELTKFVQYCSQASKIRCRYNALW*RILGVI
Trigger: TATAACACCAAGAATTCTCAACCACAGTGCATTGTA...TCTACATCTAATTTTAGAAGCCTGGCTACAATACTGCACAAACTTGGTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTA +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYGSFLS*SKRLLV
Trigger: TACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACC...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTA +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLGSFLS*SKRLLV
Trigger: TACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTA +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLGSFLS*SKRLLV
Trigger: TACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACC...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATCAGTTTCTGTGTCGTaGCTGCCAAAATCTAAAGAT +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASVSVS*LPKSKD
Trigger: ATCTTTAGATTTTGGCAGCAACGACACAGAAACTGA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAGTAGGTTCTTGTATTaGAGTCTGCTGGAATACTGT +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASRFLY*SLLEYC
Trigger: ACAGTATTCCAGCAGACTCAAATACAAGAACCTACT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAAGTAGGTTCTTGTATTaGAGTCTGCTGGAATACTGT +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLSRFLY*SLLEYC
Trigger: ACAGTATTCCAGCAGACTCAAATACAAGAACCTACT...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAGTAGGTTCTTGTATTaGAGTCTGCTGGAATACTGT +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYSRFLY*SLLEYC
Trigger: ACAGTATTCCAGCAGACTCAAATACAAGAACCTACT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAATTAGCAGTAGGTTCTaGTATTTGAGTCTGCTGGAA +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAISSRF*YLSLLE
Trigger: TTCCAGCAGACTCAAATACAAGAACCTACTGCTAAT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTAGCAAAGCTAGTATCTTaGGATTTAGTTCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLAKLVS*DLVLPQ
Trigger: CTGAGGAAGAACTAAATCCAAAGATACTAGCTTTGC...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATAAATATATTGTGCAATaGTGGCTACCACGTACTGCT +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYKYIVQ*WLPRTA
Trigger: AGCAGTACGTGGTAGCCACAATTGCACAATATATTT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCAAAATATATTGTGCAATaGTGGCTACCACGTACTGCT +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAKYIVQ*WLPRTA
Trigger: AGCAGTACGTGGTAGCCACAATTGCACAATATATTT...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTAAATATATTGTGCAATaGTGGCTACCACGTACTGCT +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLKYIVQ*WLPRTA
Trigger: AGCAGTACGTGGTAGCCACAATTGCACAATATATTT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS CCA 90 bp TCTCTATATGGTGATGATGTGGCACTAGTAGTTTCTTTATGTATGTaGGTAGGAGATGGAGATGCAATCAATATTTTAATGTCTTCCATA +
Preference number: 5 (lower is better)
Translates to: SLYGDDVALVVSLCM*VGDGDAINILMSSI
Trigger: TATGGAAGACATTAAAATATTGATTGCATCTCCATCTCCTACCCACATACATAAAGAAACTACTAGTGCCACATCATCACCATATAGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTATATATGACAGTTGCTaGAGTTTCAACCCAGACATA +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLIYDSC*SFNPDI
Trigger: TATGTCTGGGTTGAAACTCAAGCAACTGTCATATAT...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATATATATGACAGTTGCTaGAGTTTCAACCCAGACATA +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYIYDSC*SFNPDI
Trigger: TATGTCTGGGTTGAAACTCAAGCAACTGTCATATAT...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTACAATGCACTGTGGTaGAGAATTCTTGGTGTTATA +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYYNALW*RILGVI
Trigger: TATAACACCAAGAATTCTCAACCACAGTGCATTGTA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATACAATGCACTGTGGTaGAGAATTCTTGGTGTTATA +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILAYNALW*RILGVI
Trigger: TATAACACCAAGAATTCTCAACCACAGTGCATTGTA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp AATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATGTCAAAGAGGCTACTaGTATCTTCTGATTCAACTT +
Preference number: 5 (lower is better)
Translates to: NILCNCGYHVLLAKHYYLCQRGY*YLLIQL
Trigger: AAGTTGAATCAGAAGATACAAGTAGCCTCTTTGACA...TAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp ATATATTGTGCAATTGTGGCTACCACGTACTGCTGGCAAAGCATTATTATTTATTGTCAAAGAGGCTACTaGTATCTTCTGATTCAACTT +
Preference number: 5 (lower is better)
Translates to: IYCAIVATTYCWQSIIIYCQRGY*YLLIQL
Trigger: AAGTTGAATCAGAAGATACAAGTAGCCTCTTTGACA...ATAAATAATAATGCTTTGCCAGCAGTACGTGGTAGCCACAATTGCACAATATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp CTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTACAAAAATTATATTGGCATCCAACTTGAATTCATaGACCATATCACTATCCACA +
Preference number: 5 (lower is better)
Translates to: LPMIMMKGYCLLTKIILASNLNS*TISLST
Trigger: TGTGGATAGTGATATGGTCAATGAATTCAAGTTGGA...TGCCAATATAATTTTTGTAAGAAGGCAGTAACCTTTCATCATGATCATAGGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS-3UTR CAA 90 bp GGTGTAAAAATTTTTCAACTGCCTATGATCATGATGAAAGGTTACTGCCTTCTTTCCAACTTGAATTCATaGACCATATCACTATCCACA +
Preference number: 5 (lower is better)
Translates to: GVKIFQLPMIMMKGYCLLSNLNS*TISLST
Trigger: TGTGGATAGTGATATGGTCAATGAATTCAAGTTGGA...AAGAAGGCAGTAACCTTTCATCATGATCATAGGCAGTTGAAAAATTTTTACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
CDS CCA 72 bp CCGGGGTCCGGGCCCGGCTCCGAGCCTCTCCTCAGGTaGCTTGTCAGGGCCCAGCCCGACACACTGGCCGAA +
Preference number: 6 (lower is better)
Translates to: PGSGPGSEPLLR*LVRAQPDTLAE
Trigger: TTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000553999.5
ENST00000557446.5
CDS CAA 72 bp GGTCCGGGCCCGGCTCCGAGCCTCTCCTCAGGTGGCTaGTCAGGGCCCAGCCCGACACACTGGCCGAAGCGA +
Preference number: 6 (lower is better)
Translates to: GPGPAPSLSSGG*SGPSPTHWPKR
Trigger: TCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000553999.5
ENST00000557446.5
CDS CAA 90 bp AATCGCCGGGGTCCGGGCCCGGCTCCGAGCCTCTCCTCAGGTGGCTaGTCAGGGCCCAGCCCGACACACTGGCCGAAGCGACGAAGAGGG +
Preference number: 6 (lower is better)
Translates to: NRRGPGPAPSLSSGG*SGPSPTHWPKRRRG
Trigger: CCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000553999.5
ENST00000557446.5
CDS TCA 72 bp TTTTCTTGTCGTTCGCGCCGCCGGCGCCCTCCATGGTaGATCGGTCCCCGCGATGTCTTCACGGCGGGCGGC +
Preference number: 6 (lower is better)
Translates to: FSCRSRRRRPPW*IGPRDVFTAGG
Trigger: GCCGCCCGCCGTGAAGACATCGCGGGGACCGATTCACCATGGAGGGCGCCGGCGGCGCGAACGACAAGAAAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000553999.5
ENST00000557446.5
CDS TCA 72 bp CCCAGCCCGACACACTGGCCGAAGCGACGAAGAGGGTaGTCCTCCTGTCCCCTCAGACGAGGCAGCACTGTG +
Preference number: 6 (lower is better)
Translates to: PSPTHWPKRRRG*SSCPLRRGSTV
Trigger: CACAGTGCTGCCTCGTCTGAGGGGACAGGAGGATCACCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000337138.9
ENST00000553999.5
ENST00000557446.5
CDS CAA 72 bp TTGTATTTGAGTCTGCTGGAATACTGTAACTGTGCTTaGAGGACTTGCGCTTTCAGGGCTTGCGGAACTGCT +
Preference number: 6 (lower is better)
Translates to: LYLSLLEYCNCA*RTCAFRACGTA
Trigger: AGCAGTTCCGCAAGCCCTGAAAGCGCAAGTCCTCAAAGCACAGTTACAGTATTCCAGCAGACTCAAATACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS CAA 72 bp GCAGGTCATAGGTGGTTTCTTATACCCACACTGAGGTaGGTTACTGTTGGTATCATATACGTGAATGTGGCC +
Preference number: 6 (lower is better)
Translates to: AGHRWFLIPTLR*VTVGIIYVNVA
Trigger: GGCCACATTCACGTATATGATACCAACAGTAACCAACCTCAGTGTGGGTATAAGAAACCACCTATGACCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000556237.1
ENST00000557206.1
ENST00000557538.5
CDS CAA 72 bp CATAACTGGTCAGCTGTGGTAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTACATGCTAAATCAGAGG +
Preference number: 6 (lower is better)
Translates to: HNWSAVVIHFHP*IAPAVYMLNQR
Trigger: CCTCTGATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000556827.1
ENST00000557538.5
CDS CCA 72 bp AATGGGTTCACAAATCAGCACCAAGCAGGTCATAGGTaGTTTCTTATACCCACACTGAGGTTGGTTACTGTT +
Preference number: 6 (lower is better)
Translates to: NGFTNQHQAGHR*FLIPTLRLVTV
Trigger: AACAGTAACCAACCTCAGTGTGGGTATAAGAAACCACCTATGACCTGCTTGGTGCTGATTTGTGAACCCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000556237.1
ENST00000557206.1
ENST00000557538.5
CDS CCA 72 bp CAGCACTACTTCGAAGTGGCTTTGGCGTTTCAGCGGTaGGTAATGGAGACATTGCCAAATTTATATTCTGTA +
Preference number: 6 (lower is better)
Translates to: QHYFEVALAFQR*VMETLPNLYSV
Trigger: TACAGAATATAAATTTGGCAATGTCTCCATTACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS CAA 90 bp GCGGCTGGGGCCAGCAAAGTTAAAGCATCAGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTATCTTCTGATTCAACTTTGGTGAAT +
Preference number: 6 (lower is better)
Translates to: AAGASKVKASGSFLS*SKRLLVSSDSTLVN
Trigger: ATTCACCAAAGTTGAATCAGAAGATACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACCTGATGCTTTAACTTTGCTGGCCCCAGCCGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS TCA 72 bp GACTCTGGATTTGGTTCTAATTTTAATGCAACTTCTTaGTTGAGTGCAGGGTCAGCACTACTTCGAAGTGGC +
Preference number: 6 (lower is better)
Translates to: DSGFGSNFNATS*LSAGSALLRSG
Trigger: GCCACTTCGAAGTAGTGCTGACCCTGCACTCAATCAAGAAGTTGCATTAAAATTAGAACCAAATCCAGAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS CAA 72 bp CATAACTGGTCAGCTGTGGTAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTACATGCTAAATAATTCC +
Preference number: 6 (lower is better)
Translates to: HNWSAVVIHFHP*IAPAVYMLNNS
Trigger: GGAATTATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS CAA 90 bp CTTCACAATCATAACTGGTCAGCTGTGGTAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTACATGCTAAATAATTCCTACTGCTTG +
Preference number: 6 (lower is better)
Translates to: LHNHNWSAVVIHFHP*IAPAVYMLNNSYCL
Trigger: CAAGCAGTAGGAATTATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000323441.10
CDS CAA 90 bp CTTCACAATCATAACTGGTCAGCTGTGGTAATCCACTTTCATCCATaGATTGCCCCAGCAGTCTACATGCTAAATCAGAGGGTATTAAAA +
Preference number: 6 (lower is better)
Translates to: LHNHNWSAVVIHFHP*IAPAVYMLNQRVLK
Trigger: TTTTAATACCCTCTGATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000556827.1
ENST00000557538.5
CDS CAA 90 bp TTTTGGTCAGATGATCAGAGTCCAAAGCATGATAATATTCATAAATaGAGCGGCCTAAAAGTTCTTCTGGCTCATATCCCATCAATTCGG +
Preference number: 6 (lower is better)
Translates to: FWSDDQSPKHDNIHK*SGLKVLLAHIPSIR
Trigger: CCGAATTGATGGGATATGAGCCAGAAGAACTTTTAGGCCGCTCAATTTATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS GCA 72 bp AGCATTACATCATTATATAATGGTACTTCCTCAAGTTaGTGGTCATCAGTTTCTGTGTCGTTGCTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: SITSLYNGTSSS*WSSVSVSLLPK
Trigger: TTTTGGCAGCAACGACACAGAAACTGATGACCAGCAACTTGAGGAAGTACCATTATATAATGATGTAATGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS CAA 72 bp GCCAGCAAAGTTAAAGCATCAGGTTCCTTCTTAAGTTaGTCAAAGAGGCTACTTGTATCTTCTGATTCAACT +
Preference number: 6 (lower is better)
Translates to: ASKVKASGSFLS*SKRLLVSSDST
Trigger: AGTTGAATCAGAAGATACAAGTAGCCTCTTTGACAAACTTAAGAAGGAACCTGATGCTTTAACTTTGCTGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS CCA 72 bp ATTACATCATTATATAATGGTACTTCCTCAAGTTGCTaGTCATCAGTTTCTGTGTCGTTGCTGCCAAAATCT +
Preference number: 6 (lower is better)
Translates to: ITSLYNGTSSSC*SSVSVSLLPKS
Trigger: AGATTTTGGCAGCAACGACACAGAAACTGATGACCAGCAACTTGAGGAAGTACCATTATATAATGATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS CAA 90 bp AATAATACCACTCACAACGTAATTCACACATACAATGCACTGTGGTaGAGAATTCTTGGTGTTATATATGACAGTTGCTTGAGTTTCAAC +
Preference number: 6 (lower is better)
Translates to: NNTTHNVIHTYNALW*RILGVIYDSCLSFN
Trigger: GTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAGTGGTATTATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000557538.5
CDS TCA 72 bp CAAAGAGGCTACTTGTATCTTCTGATTCAACTTTGGTaGATAGCTGAGTCATTTTCATATCTGAAGATTCAA +
Preference number: 6 (lower is better)
Translates to: QRGYLYLLIQLW*IAESFSYLKIQ
Trigger: TTGAATCTTCAGATATGAAAATGACTCAGCTATTCACCAAAGTTGAATCAGAAGATACAAGTAGCCTCTTTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5
CDS GCA 72 bp AGTAGTTTCTTTATGTATGTGGGTAGGAGATGGAGATaGAATCAATATTTTAATGTCTTCCATACGGTCTTT +
Preference number: 6 (lower is better)
Translates to: SSFFMYVGRRWR*NQYFNVFHTVF
Trigger: AAAGACCGTATGGAAGACATTAAAATATTGATTGCATCTCCATCTCCTACCCACATACATAAAGAAACTACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000323441.10
ENST00000337138.9
ENST00000394997.5
ENST00000539097.2
ENST00000555014.1
ENST00000557538.5