Pregenerated sensors for HHLA3 (Homo sapiens)
Ensembl gene IDs: ENSG00000197568Ensembl transcript IDs: ENST00000359875.9, ENST00000361764.8, ENST00000370940.6, ENST00000463058.5, ENST00000486110.1, ENST00000525653.1, ENST00000531950.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAAAGCGCGGTTGGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCTaGGAGACTCCAGCTCTGGGCGGAAACACACTGCCTCGGAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: KSAVGGSAGSGSAGS*ETPALGGNTLPRRR Trigger: GCGCCTCCGAGGCAGTGTGTTTCCGCCCAGAGCTGGAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000486110.1 |
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| CDS CCA 90 bp | GCCCACAAAAAGCGCGGTTGGCGGGAGTGCGGGTTCGGGGTCGGCTaGCAGCTGGGAGACTCCAGCTCTGGGCGGAAACACACTGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: AHKKRGWRECGFGVG*QLGDSSSGRKHTAS Trigger: CGAGGCAGTGTGTTTCCGCCCAGAGCTGGAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTTTGTGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 |
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| CDS CCA 90 bp | ATCCAACGGAGGCTGTGGTTTCCGACCGCCCACAAAAAGCGCGGTTaGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCTGGGAGACTCC | + |
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Preference number: 5 (lower is better) Translates to: IQRRLWFPTAHKKRG*RECGFGVGWQLGDS Trigger: GGAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCTCCGTTGGAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 90 bp | ACTGAGTATCCTCTGCATCTCGGTGACATCACATCCTGCGTGCCGTaGCGTCATTCTGCATTCCTCTGCGGGAGGCTCAGATCCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TEYPLHLGDITSCVP*RHSAFLCGRLRSGG Trigger: CCCTCCGGATCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACCGAGATGCAGAGGATACTCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 90 bp | TGTTGGTTGACTGAGTATCCTCTGCATCTCGGTGACATCACATCCTaGGTGCCGTGGCGTCATTCTGCATTCCTCTGCGGGAGGCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: CWLTEYPLHLGDITS*VPWRHSAFLCGRLR Trigger: TCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACCGAGATGCAGAGGATACTCAGTCAACCAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 90 bp | AAGTGGTTGTTTATAACATGCACCGAACATATCCAACGGAGGCTGTaGTTTCCGACCGCCCACAAAAAGCGCGGTTGGCGGGAGTGCGGG | + |
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Preference number: 5 (lower is better) Translates to: KWLFITCTEHIQRRL*FPTAHKKRGWRECG Trigger: CCCGCACTCCCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCTCCGTTGGATATGTTCGGTGCATGTTATAAACAACCACTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 90 bp | GGTGACATCACATCCTGCGTGCCGTGGCGTCATTCTGCATTCCTCTaGGGGAGGCTCAGATCCGGAGGGTTTAAGTGGTTGTTTATAACA | + |
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Preference number: 5 (lower is better) Translates to: GDITSCVPWRHSAFL*GRLRSGGFKWLFIT Trigger: TGTTATAAACAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 90 bp | CATTCTGCATTCCTCTGCGGGAGGCTCAGATCCGGAGGGTTTAAGTaGTTGTTTATAACATGCACCGAACATATCCAACGGAGGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: HSAFLCGRLRSGGFK*LFITCTEHIQRRLW Trigger: CCACAGCCTCCGTTGGATATGTTCGGTGCATGTTATAAACAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAGGAATGCAGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 90 bp | CCCGCCTCCGCTTTTAATTGTTTGGCCTTCATTCCTCTTCTACAGTaGTCCCTGCAATCAGTACTGGTGCTGTACATATTTGCTAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: PASAFNCLAFIPLLQ*SLQSVLVLYIFASF Trigger: GAAGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCAAACAATTAAAAGCGGAGGCGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS GCA 90 bp | TGGCCTTCATTCCTCTTCTACAGTGCTCCCTGCAATCAGTACTGGTaGTGTACATATTTGCTAGCTTCGTACATACGGCACGAAGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: WPSFLFYSAPCNQYW*CTYLLASYIRHEVD Trigger: ATCTACTTCGTGCCGTATGTACGAAGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS CCA 90 bp | GTTTGGCCTTCATTCCTCTTCTACAGTGCTCCCTGCAATCAGTACTaGTGCTGTACATATTTGCTAGCTTCGTACATACGGCACGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: VWPSFLFYSAPCNQY*CCTYLLASYIRHEV Trigger: TACTTCGTGCCGTATGTACGAAGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS CCA 90 bp | TTGCTTGGGCTCAGAGGTCTGACACACATCACTAAGCTTACTCTATaGATTCGCCTCAAATTCTTTCTTGCAAGAGATCCAAGAATGCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGLRGLTHITKLTL*IRLKFFLARDPRML Trigger: GAGCATTCTTGGATCTCTTGCAAGAAAGAATTTGAGGCGAATCCATAGAGTAAGCTTAGTGATGTGTGTCAGACCTCTGAGCCCAAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 |
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| CDS TCA 90 bp | CCGTTGACAAGACCCCTGATGGTGTTTTTCTCCTTCGTGCTCCATTaGAACCACTATCTTGAATTTGGCGTTATTATTCCCACACATTTG | + |
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Preference number: 5 (lower is better) Translates to: PLTRPLMVFFSFVLH*NHYLEFGVIIPTHL Trigger: CAAATGTGTGGGAATAATAACGCCAAATTCAAGATAGTGGTTTCAATGGAGCACGAAGGAGAAAAACACCATCAGGGGTCTTGTCAACGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000525653.1 |
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| CDS GCA 90 bp | CCGCTTTTAATTGTTTGGCCTTCATTCCTCTTCTACAGTGCTCCCTaGAATCAGTACTGGTGCTGTACATATTTGCTAGCTTCGTACATA | + |
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Preference number: 5 (lower is better) Translates to: PLLIVWPSFLFYSAP*NQYWCCTYLLASYI Trigger: TATGTACGAAGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCAAACAATTAAAAGCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS CCA 72 bp | AAGCGCGGTTGGCGGGAGTGCGGGTTCGGGGTCGGCTaGCAGCTGGGAGACTCCAGCTCTGGGCGGAAACAC | + |
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Preference number: 6 (lower is better) Translates to: KRGWRECGFGVG*QLGDSSSGRKH Trigger: GTGTTTCCGCCCAGAGCTGGAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000531950.1 |
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| CDS CCA 72 bp | GTTGGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCTaGGAGACTCCAGCTCTGGGCGGAAACACACTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VGGSAGSGSAGS*ETPALGGNTLP Trigger: AGGCAGTGTGTTTCCGCCCAGAGCTGGAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 |
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| CDS CCA 72 bp | AGGCTGTGGTTTCCGACCGCCCACAAAAAGCGCGGTTaGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: RLWFPTAHKKRG*RECGFGVGWQL Trigger: CAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CAA 72 bp | GAGGCTGTGGTTTCCGACCGCCCACAAAAAGCGCGGTaGGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: EAVVSDRPQKAR*AGVRVRGRLAA Trigger: AGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CAA 90 bp | TATCCAACGGAGGCTGTGGTTTCCGACCGCCCACAAAAAGCGCGGTaGGCGGGAGTGCGGGTTCGGGGTCGGCTGGCAGCTGGGAGACTC | + |
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Preference number: 6 (lower is better) Translates to: YPTEAVVSDRPQKAR*AGVRVRGRLAAGRL Trigger: GAGTCTCCCAGCTGCCAGCCGACCCCGAACCCGCACTCCCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCTCCGTTGGATA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 72 bp | CCTCTGCATCTCGGTGACATCACATCCTGCGTGCCGTaGCGTCATTCTGCATTCCTCTGCGGGAGGCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: PLHLGDITSCVP*RHSAFLCGRLR Trigger: TCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACCGAGATGCAGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 72 bp | ACATCCTGCGTGCCGTGGCGTCATTCTGCATTCCTCTaGGGGAGGCTCAGATCCGGAGGGTTTAAGTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: TSCVPWRHSAFL*GRLRSGGFKWL Trigger: CAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 72 bp | AGTATCCTCTGCATCTCGGTGACATCACATCCTGCGTaGCGTGGCGTCATTCTGCATTCCTCTGCGGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SILCISVTSHPA*RGVILHSSAGG Trigger: GCCTCCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACCGAGATGCAGAGGATACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS GCA 72 bp | ACTGAGTATCCTCTGCATCTCGGTGACATCACATCCTaGGTGCCGTGGCGTCATTCTGCATTCCTCTGCGGG | + |
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Preference number: 6 (lower is better) Translates to: TEYPLHLGDITS*VPWRHSAFLCG Trigger: CCCGCAGAGGAATGCAGAATGACGCCACGGCACGCAGGATGTGATGTCACCGAGATGCAGAGGATACTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 72 bp | TTTATAACATGCACCGAACATATCCAACGGAGGCTGTaGTTTCCGACCGCCCACAAAAAGCGCGGTTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: FITCTEHIQRRL*FPTAHKKRGWR Trigger: CCGCCAACCGCGCTTTTTGTGGGCGGTCGGAAACCACAGCCTCCGTTGGATATGTTCGGTGCATGTTATAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CAA 72 bp | CTCTGCGGGAGGCTCAGATCCGGAGGGTTTAAGTGGTaGTTTATAACATGCACCGAACATATCCAACGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LCGRLRSGGFKW*FITCTEHIQRR Trigger: CCTCCGTTGGATATGTTCGGTGCATGTTATAAACAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CAA 72 bp | ATGCTCTCTTGGGGTCTGGATAGGGACCCCTTTCCGTaGACAAGACATACGGCACGAAGTAGATGCTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: MLSWGLDRDPFP*TRHTARSRCSV Trigger: TACTGAGCATCTACTTCGTGCCGTATGTCTTGTCAACGGAAAGGGGTCCCTATCCAGACCCCAAGAGAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370940.6 |
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| CDS CAA 90 bp | TCTGCATTCCTCTGCGGGAGGCTCAGATCCGGAGGGTTTAAGTGGTaGTTTATAACATGCACCGAACATATCCAACGGAGGCTGTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SAFLCGRLRSGGFKW*FITCTEHIQRRLWF Trigger: AAACCACAGCCTCCGTTGGATATGTTCGGTGCATGTTATAAACAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAGGAATGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CCA 72 bp | TTCCTCTGCGGGAGGCTCAGATCCGGAGGGTTTAAGTaGTTGTTTATAACATGCACCGAACATATCCAACGG | + |
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Preference number: 6 (lower is better) Translates to: FLCGRLRSGGFK*LFITCTEHIQR Trigger: CCGTTGGATATGTTCGGTGCATGTTATAAACAACCACTTAAACCCTCCGGATCTGAGCCTCCCGCAGAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 ENST00000486110.1 ENST00000525653.1 ENST00000531950.1 |
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| CDS CAA 90 bp | GATCCAAGAATGCTCTCTTGGGGTCTGGATAGGGACCCCTTTCCGTaGACAAGACATACGGCACGAAGTAGATGCTCAGTAAATGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: DPRMLSWGLDRDPFP*TRHTARSRCSVNVG Trigger: ACCAACATTTACTGAGCATCTACTTCGTGCCGTATGTCTTGTCAACGGAAAGGGGTCCCTATCCAGACCCCAAGAGAGCATTCTTGGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370940.6 |
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| CDS CAA 72 bp | AGTGCTCCCTGCAATCAGTACTGGTGCTGTACATATTaGCTAGCTTCGTACATACGGCACGAAGTAGATGCT | + |
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Preference number: 6 (lower is better) Translates to: SAPCNQYWCCTY*LASYIRHEVDA Trigger: AGCATCTACTTCGTGCCGTATGTACGAAGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS CCA 72 bp | GAGAAGGAAGTTCACAGGTTAATCGCTCAGTTAAGGTaGGGCAGGAACAAATCACAATGGTGGAATGTCATC | + |
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Preference number: 6 (lower is better) Translates to: EKEVHRLIAQLR*GRNKSQWWNVI Trigger: GATGACATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTGAGCGATTAACCTGTGAACTTCCTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 ENST00000463058.5 |
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| CDS CAA 90 bp | GCTTTGCTTGGGCTCAGAGGTCTGACACACATCACTAAGCATTGTTaGATCTGTAAGGGTGCACCCTTCTATATAGAAGTAACTTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: ALLGLRGLTHITKHC*ICKGAPFYIEVTCL Trigger: AAGGCAAGTTACTTCTATATAGAAGGGTGCACCCTTACAGATCAAACAATGCTTAGTGATGTGTGTCAGACCTCTGAGCCCAAGCAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000463058.5 ENST00000525653.1 |
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| CDS TCA 72 bp | CATAACTCTAAACAACTCAAACAAATGGTTGAGGGGTaGGTAAGGTTGCCAGACGAAATACAAGGTGTCGGC | + |
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Preference number: 6 (lower is better) Translates to: HNSKQLKQMVEG*VRLPDEIQGVG Trigger: GCCGACACCTTGTATTTCGTCTGGCAACCTTACTCACCCCTCAACCATTTGTTTGAGTTGTTTAGAGTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000486110.1 ENST00000525653.1 |
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| CDS GCA 72 bp | ATTGTTTGGCCTTCATTCCTCTTCTACAGTGCTCCCTaGAATCAGTACTGGTGCTGTACATATTTGCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: IVWPSFLFYSAP*NQYWCCTYLLA Trigger: AGCTAGCAAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCAAACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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| CDS GCA 72 bp | CTTGCTTACTCTATGGATTCGCCTCAAATTCTTTCTTaGAAGAGATCCAAGAATGCTCTCTTGGGGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LAYSMDSPQILS*KRSKNALLGSG Trigger: TCCAGACCCCAAGAGAGCATTCTTGGATCTCTTGCAAGAAAGAATTTGAGGCGAATCCATAGAGTAAGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000463058.5 ENST00000525653.1 |
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| CDS GCA 72 bp | CCATCTTACTCTATGGATTCGCCTCAAATTCTTTCTTaGAAGAGATCCAAGAATGCTCTCTTGGGGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PSYSMDSPQILS*KRSKNALLGSG Trigger: TCCAGACCCCAAGAGAGCATTCTTGGATCTCTTGCAAGAAAGAATTTGAGGCGAATCCATAGAGTAAGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531950.1 |
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| CDS CAA 72 bp | GGGCTCAGAGGTCTGACACACATCACTAAGCATTGTTaGATCTGTAAGGGTGCACCCTTCTATATAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: GLRGLTHITKHC*ICKGAPFYIEV Trigger: TACTTCTATATAGAAGGGTGCACCCTTACAGATCAAACAATGCTTAGTGATGTGTGTCAGACCTCTGAGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000463058.5 ENST00000525653.1 |
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| CDS CAA 72 bp | TCCATCTTACTCTATGGATTCGCCTCAAATTCTTTCTaGCAAGAGATCCAAGAATGCTCTCTTGGGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SILLYGFASNSF*QEIQECSLGVW Trigger: CCAGACCCCAAGAGAGCATTCTTGGATCTCTTGCAAGAAAGAATTTGAGGCGAATCCATAGAGTAAGATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000531950.1 |
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| CDS TCA 72 bp | AGACCCCTGATGGTGTTTTTCTCCTTCGTGCTCCATTaGAACCACTATCTTGAATTTGGCGTTATTATTCCC | + |
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Preference number: 6 (lower is better) Translates to: RPLMVFFSFVLH*NHYLEFGVIIP Trigger: GGGAATAATAACGCCAAATTCAAGATAGTGGTTTCAATGGAGCACGAAGGAGAAAAACACCATCAGGGGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000525653.1 |
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| CDS CCA 72 bp | CTCAGAGGTCTGACACACATCACTAAGCTTACTCTATaGATTCGCCTCAAATTCTTTCTTGCAAGAGATCCA | + |
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Preference number: 6 (lower is better) Translates to: LRGLTHITKLTL*IRLKFFLARDP Trigger: TGGATCTCTTGCAAGAAAGAATTTGAGGCGAATCCATAGAGTAAGCTTAGTGATGTGTGTCAGACCTCTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000361764.8 ENST00000370940.6 |
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| CDS GCA 72 bp | GCTTTTAATTGTTTGGCCTTCATTCCTCTTCTACAGTaGTCCCTGCAATCAGTACTGGTGCTGTACATATTT | + |
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Preference number: 6 (lower is better) Translates to: AFNCLAFIPLLQ*SLQSVLVLYIF Trigger: AAATATGTACAGCACCAGTACTGATTGCAGGGAGCACTGTAGAAGAGGAATGAAGGCCAAACAATTAAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000359875.9 ENST00000486110.1 ENST00000531950.1 |
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