Pregenerated sensors for HESX1 (Homo sapiens)
Ensembl gene IDs: ENSG00000163666Ensembl transcript IDs: ENST00000295934.8, ENST00000473921.2, ENST00000495160.2, ENST00000647958.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGCTGAGCGCCTTCCTGAAGGCTGGGAGACATCCTCTCGTGGTCTaGACAGAGCAACAGCTCTGGCCTCTGCTGGCTCTGCCCCACGTG | + |
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Preference number: 5 (lower is better) Translates to: ELSAFLKAGRHPLVV*TEQQLWPLLALPHV Trigger: CACGTGGGGCAGAGCCAGCAGAGGCCAGAGCTGTTGCTCTGTGCAGACCACGAGAGGATGTCTCCCAGCCTTCAGGAAGGCGCTCAGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000295934.8 ENST00000495160.2 ENST00000647958.1 |
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| CDS GCA 90 bp | GGCCTCTGCTGGCTCTGCCCCACGTGTATAGGGCTGGGATCTTCCTaGAGTTCACCTTATAGCTCCGCTGACAAGGGGGCTGGGCAACAC | + |
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Preference number: 5 (lower is better) Translates to: GLCWLCPTCIGLGSS*SSPYSSADKGAGQH Trigger: GTGTTGCCCAGCCCCCTTGTCAGCGGAGCTATAAGGTGAACTGCAGGAAGATCCCAGCCCTATACACGTGGGGCAGAGCCAGCAGAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647958.1 |
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| CDS CCA 90 bp | AAGGCTGGGAGACATCCTCTCGTGGTCTGCACAGAGCAACAGCTCTaGCCTCTGCTGGCTCTGCCCCACGTGTATAGGGCTGGGATCTTC | + |
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Preference number: 5 (lower is better) Translates to: KAGRHPLVVCTEQQL*PLLALPHVYRAGIF Trigger: GAAGATCCCAGCCCTATACACGTGGGGCAGAGCCAGCAGAGGCCAGAGCTGTTGCTCTGTGCAGACCACGAGAGGATGTCTCCCAGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 90 bp | TTACCATCTTTCCCTGATGAGCTGCAGGTGTCTGCCCAGGGCCTGTaGGGTTTCATTAATGGAACACAGTCTTTCTTCTGGTCCAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: LPSFPDELQVSAQGL*GFINGTQSFFWSSP Trigger: AGGACTGGACCAGAAGAAAGACTGTGTTCCATTAATGAAACCCCACAGGCCCTGGGCAGACACCTGCAGCTCATCAGGGAAAGATGGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295934.8 ENST00000473921.2 ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 90 bp | GCCCAGGGCCTGTGGGGTTTCATTAATGGAACACAGTCTTTCTTCTaGTCCAGTCCTAAGATTCTCTCAATTGAAAAGGAGCAAGTTGAG | + |
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Preference number: 5 (lower is better) Translates to: AQGLWGFINGTQSFF*SSPKILSIEKEQVE Trigger: CTCAACTTGCTCCTTTTCAATTGAGAGAATCTTAGGACTGGACCAGAAGAAAGACTGTGTTCCATTAATGAAACCCCACAGGCCCTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000295934.8 ENST00000473921.2 ENST00000495160.2 ENST00000647958.1 |
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| CDS GCA 72 bp | GCCTTCCTGAAGGCTGGGAGACATCCTCTCGTGGTCTaGACAGAGCAACAGCTCTGGCCTCTGCTGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: AFLKAGRHPLVV*TEQQLWPLLAL Trigger: CAGAGCCAGCAGAGGCCAGAGCTGTTGCTCTGTGCAGACCACGAGAGGATGTCTCCCAGCCTTCAGGAAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000295934.8 ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 72 bp | AGACATCCTCTCGTGGTCTGCACAGAGCAACAGCTCTaGCCTCTGCTGGCTCTGCCCCACGTGTATAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: RHPLVVCTEQQL*PLLALPHVYRA Trigger: AGCCCTATACACGTGGGGCAGAGCCAGCAGAGGCCAGAGCTGTTGCTCTGTGCAGACCACGAGAGGATGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000495160.2 ENST00000647958.1 |
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| CDS GCA 72 bp | TGGCTCTGCCCCACGTGTATAGGGCTGGGATCTTCCTaGAGTTCACCTTATAGCTCCGCTGACAAGGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: WLCPTCIGLGSS*SSPYSSADKGA Trigger: AGCCCCCTTGTCAGCGGAGCTATAAGGTGAACTGCAGGAAGATCCCAGCCCTATACACGTGGGGCAGAGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 72 bp | GTTTGTTTTCCCCGAGCTGAGCGCCTTCCTGAAGGCTaGGAGACATCCTCTCGTGGTCTGCACAGAGCAACA | + |
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Preference number: 6 (lower is better) Translates to: VCFPRAERLPEG*ETSSRGLHRAT Trigger: TGTTGCTCTGTGCAGACCACGAGAGGATGTCTCCCAGCCTTCAGGAAGGCGCTCAGCTCGGGGAAAACAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000295934.8 ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 72 bp | TTCCCTGATGAGCTGCAGGTGTCTGCCCAGGGCCTGTaGGGTTTCATTAATGGAACACAGTCTTTCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: FPDELQVSAQGL*GFINGTQSFFW Trigger: CCAGAAGAAAGACTGTGTTCCATTAATGAAACCCCACAGGCCCTGGGCAGACACCTGCAGCTCATCAGGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295934.8 ENST00000473921.2 ENST00000495160.2 ENST00000647958.1 |
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| CDS TCA 72 bp | TTTTCATATTTCGAAGCTCTTTCTTCTGGCATTGGGTaGTCCACCACGCTAGGGAATGAAATCCCACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: FSYFEALSSGIG*STTLGNEIPLG Trigger: TCCCAGTGGGATTTCATTCCCTAGCGTGGTGGATCACCCAATGCCAGAAGAAAGAGCTTCGAAATATGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000295934.8 ENST00000473921.2 ENST00000495160.2 ENST00000647958.1 |
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| CDS CCA 72 bp | TTGAAACCAAATCTGGTTTTGAGTAAAAGCAGTTCTTaGTCTTCGGCCTCTATACCAACTCAACTCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: LKPNLVLSKSSS*SSASIPTQLSF Trigger: AAAAGAGAGTTGAGTTGGTATAGAGGCCGAAGACCAAGAACTGCTTTTACTCAAAACCAGATTTGGTTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000473921.2 |
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