RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HERC4 (Homo sapiens)

Ensembl gene IDs: ENSG00000148634

Ensembl transcript IDs: ENST00000277817.10, ENST00000373700.9, ENST00000395185.7, ENST00000395198.7, ENST00000412272.6, ENST00000427635.6, ENST00000460168.1, ENST00000463478.1, ENST00000473533.6, ENST00000480158.1, ENST00000492996.6, ENST00000505760.5, ENST00000506515.1, ENST00000513996.5, ENST00000515753.1

Found 511 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGAAAGGGTGAGTACAAAACTATGGGCTCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGCAAAGACTTAAGCAGCTGCGGTGAA +
Preference number: 1 (lower is better)
Translates to: PERVSTKLWAPPAAT*MKGIPSKDLSSCGE
Trigger: TTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR GCA 90 bp GATAGCTCCAGAAAGGGTGAGTACAAAACTATGGGCTCCTCCTGCTaGAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCAGCTG +
Preference number: 1 (lower is better)
Translates to: DSSRKGEYKTMGSSC*NLHERDSKQRLKQL
Trigger: CAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR CCA 90 bp CAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTaGATGACTAGTTTCAGACTCTTCATACCAAGAATAGGAATGCGA +
Preference number: 1 (lower is better)
Translates to: QVWETGRYSSPPPVD*MTSFRLFIPRIGMR
Trigger: TCGCATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR GCA 90 bp AAAGATAGCTCCAGAAAGGGTGAGTACAAAACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCAG +
Preference number: 1 (lower is better)
Translates to: KDSSRKGEYKTMGSS*CNLHERDSKQRLKQ
Trigger: CTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR GCA 90 bp CAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAGAACTaGAGGTTATGTAGTATATTCCCTATCTGTGATTTAGGTTTGCAC +
Preference number: 1 (lower is better)
Translates to: QSPIYQCVRIHKEKN*RLCSIFPICDLGLH
Trigger: GTGCAAACCTAAATCACAGATAGGGAATATACTACATAACCTGCAGTTCTTTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR CCA 90 bp CTGCTCCCCAAACTGGAAAGAGTATCTATTACCAAAAATATTGCTTaGCTAGTCCATAGTCTATCCCTGTTATCCTATTCCCATTCCTTA +
Preference number: 1 (lower is better)
Translates to: LLPKLERVSITKNIA*LVHSLSLLSYSHSL
Trigger: TAAGGAATGGGAATAGGATAACAGGGATAGACTATGGACTAGCCAAGCAATATTTTTGGTAATAGATACTCTTTCCAGTTTGGGGAGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 90 bp GACAGGTTTCAATCACCATTTGGTTATTTCAGTAAAACTACTACATaGAGGCAGGAGAGTAGTTCCATCAGGAAACACATAATTCCTTTG +
Preference number: 1 (lower is better)
Translates to: DRFQSPFGYFSKTTT*RQESSSIRKHIIPL
Trigger: CAAAGGAATTATGTGTTTCCTGATGGAACTACTCTCCTGCCTCCATGTAGTAGTTTTACTGAAATAACCAAATGGTGATTGAAACCTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 90 bp AGACTGGATTTTGCTGACTTTATCTTTGTGGTTTCTCCTAACATTTaGCTTGGTCTTCTGTTCTGTAAATTGGTGGTTGAATCTAGACAG +
Preference number: 1 (lower is better)
Translates to: RLDFADFIFVVSPNI*LGLLFCKLVVESRQ
Trigger: CTGTCTAGATTCAACCACCAATTTACAGAACAGAAGACCAAGCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAGCAAAATCCAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 90 bp CTCTTAAAATGTGATTGTGCCCTCTATAAACAATTCCCTACAAGATaGTTGACTAATCTACAGTACATGAATGGGTTTCTGGAGGCTATG +
Preference number: 1 (lower is better)
Translates to: LLKCDCALYKQFPTR*LTNLQYMNGFLEAM
Trigger: CATAGCCTCCAGAAACCCATTCATGTACTGTAGATTAGTCAACCATCTTGTAGGGAATTGTTTATAGAGGGCACAATCACATTTTAAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 90 bp TGCATCTGTAAGACTGCATCGGTCTGTAACAGAGTAGTTTTTGCTTaGGCATCAAATACAAATGGATATGTACAGATTGTAACAGGGATA +
Preference number: 1 (lower is better)
Translates to: CICKTASVCNRVVFA*ASNTNGYVQIVTGI
Trigger: TATCCCTGTTACAATCTGTACATATCCATTTGTATTTGATGCCCAAGCAAAAACTACTCTGTTACAGACCGATGCAGTCTTACAGATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR CCA 90 bp AGCAATCTCAGTGACAATGCTTCCCATAAGTTCAAAAACTTTCCTTaGGTTTATTTCATGACTGGTAGAATTATGGCCCAACTGACCATA +
Preference number: 1 (lower is better)
Translates to: SNLSDNASHKFKNFP*VYFMTGRIMAQLTI
Trigger: TATGGTCAGTTGGGCCATAATTCTACCAGTCATGAAATAAACCCAAGGAAAGTTTTTGAACTTATGGGAAGCATTGTCACTGAGATTGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR CCA 90 bp AGTTTGAGAAACCTAGTCATTTGTCCTGTACAACTTTATGCAGACTaGATTTTGCTGACTTTATCTTTGTGGTTTCTCCTAACATTTGGC +
Preference number: 1 (lower is better)
Translates to: SLRNLVICPVQLYAD*ILLTLSLWFLLTFG
Trigger: GCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCTCAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR GCA 90 bp TCGAAAAAGTTTGAGAAACCTAGTCATTTGTCCTGTACAACTTTATaGAGACTGGATTTTGCTGACTTTATCTTTGTGGTTTCTCCTAAC +
Preference number: 1 (lower is better)
Translates to: SKKFEKPSHLSCTTL*RLDFADFIFVVSPN
Trigger: GTTAGGAGAAACCACAAAGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCTCAAACTTTTTCGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACCCAGGAGGCGGAGGTTaGAGTGAGCCGAGATCACCC +
Preference number: 2 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNPGGGG*SEPRSP
Trigger: GGGTGATCTCGGCTCACTGCAACCTCCGCCTCCTGG...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp AGGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAGGCAGGAGGATGGCGTaGGCCCAGTTCAAAGCTGCA +
Preference number: 2 (lower is better)
Translates to: RQPEEENVPSISLAISTGGRRMA*AQFKAA
Trigger: TGCAGCTTTGAACTGGGCTCACGCCATCCTCCTGCC...TCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWSDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACTTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 2 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR GCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGCCGAGATCACCCCACTaGACTCCAGCCTGGGCCAGA +
Preference number: 2 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKPRSPH*TPAWAR
Trigger: TCTGGCCCAGGCTGGAGTGCAGTGGGGTGATCTCGG...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGCGGGTTGGAGTGCAGTaGCATGATCTCGGCTTACTG +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWRVGVQ*HDLGLL
Trigger: CAGTAAGCCGAGATCATGCCACTGCACTCCAACCCG...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTACTCCTGACCTCAAGTaGTCTGCCCACCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFTPDLK*SAHLSL
Trigger: GAGGCTGAGGTGGGCAGATCACTTGAGGTCAGGAGT...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATGTAGTCCCAGCTACTTaGGAGAGTGAGGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYVVPAT*ESEAGG
Trigger: TCCTCCTGCCTCACTCTCCCAAGTAGCTGGGACTAC...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWTSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR GCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCGAACCGGTTCCCAGCTaGCCATTACCACCAAGCCCA +
Preference number: 2 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFEPVPS*PLPPSP
Trigger: TGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTC...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR CCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATTCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYSEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR GCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCTTGCCCAGGCTGGAGTaGAGTGGCGCGATCTTGGTT +
Preference number: 2 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFLPRLE*SGAILV
Trigger: AACCAAGATCGCGCCACTGCACTCCAGCCTGGGCAA...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTCTGTGACTAGCCACTaGACTCCAGCAAGCAACATA +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWSVTSH*TPASNI
Trigger: TATGTTGCTTGCTGGAGTGCAGTGGCTAGTCACAGA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACCTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 2 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNLFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR GCA 90 bp AGGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGG +
Preference number: 2 (lower is better)
Translates to: RQPEEENVPSISLAISTGTMGSS*CNLHER
Trigger: CCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGT...TCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR GCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYRGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR CCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQRESEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATCTGCTGCAACTTGCATaGAAGGGATTCCAAGCAAAG +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYLLQLA*KGFQAK
Trigger: CTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAG...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR TCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAAGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQREGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACGCAGTGGCGCGATCTTaGTTCACCGCAACCTCCATC +
Preference number: 2 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYAVARS*FTATSI
Trigger: GATGGAGGTTGCGGTGAACCAAGATCGCGCCACTGC...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAAGTGAGGCAGGAGGATaGCGTGAGCCCAGTTCAAAG +
Preference number: 2 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPSEAGG*REPSSK
Trigger: CTTTGAACTGGGCTCACGCCATCCTCCTGCCTCACT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACTGGAGTGCAGTGGCATaGTCTCGGCTTACTGCAACC +
Preference number: 2 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYWSAVA*SRLTAT
Trigger: GGTTGCAGTAAGCCGAGATCATGCCACTGCACTCCA...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp AGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 2 (lower is better)
Translates to: STDHQFSSTFSGAFSRFTGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...TGTGAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGATTCATATCAACCCCTaGAAATCTGGTACCTGTTCT +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWIHINP*KSGTCS
Trigger: AGAACAGGTACCAGATTTTCAGGGGTTGATATGAAT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWCSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATGAATTATGGCCCAACTaGCCATACCCTCCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDELWPN*PYPPAP
Trigger: TGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTC...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR TCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATCTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYLGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR GCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 2 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR CCA 90 bp AGGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAGTAAAACTACTACATaGAGGCAGGAGAGTAGTTCC +
Preference number: 2 (lower is better)
Translates to: RQPEEENVPSISLAISTGSKTTT*RQESSS
Trigger: GGAACTACTCTCCTGCCTCCATGTAGTAGTTTTACT...TCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGGTTTCTCCTAACATTTaGCTTGGTCTTCTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWVSPNI*LGLLFC
Trigger: ACAGAACAGAAGACCAAGCCAAATGTTAGGAGAAAC...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTACAGGTGTGAGCCACTaGATCCTATCCTTAATTTCC +
Preference number: 2 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISTGVSH*ILSLIS
Trigger: GGAAATTAAGGATAGGATGCAGTGGCTCACACCTGT...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp AGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACACTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 2 (lower is better)
Translates to: STDHQFSSTFSGAFSRFTLFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...TGTGAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR GCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGCCTAAGGACTTCCATTaGATCTCCTACAATATTTTC +
Preference number: 2 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWPKDFH*ISYNIF
Trigger: GAAAATATTGTAGGAGATGCAATGGAAGTCCTTAGG...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATTCCATCTATCTCATTaGCTATCTCCACAGGAAACC +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQREFHLSH*LSPQET
Trigger: GGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCCTAATCTACAGTACATaGATGGGTTTCTGGAGGCTA +
Preference number: 2 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFLIYST*MGFWRL
Trigger: TAGCCTCCAGAAACCCATTCATGTACTGTAGATTAG...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 2 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDSLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR GCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATTGAAATATTCTGACTaGTATGGGGATGAGACTGAC +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQRELKYSD*YGDETD
Trigger: GTCAGTCTCATCCCCATAGCAGTCAGAATATTTCAA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATACCAAAAATATTGCTTaGCTAGTCCATAGTCTATCC +
Preference number: 2 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYTKNIA*LVHSLS
Trigger: GGATAGACTATGGACTAGCCAAGCAATATTTTTGGT...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 90 bp GACCAAATGATGAACATTAAACGATCCCACAAGCATAAGCAGCATTaGGTGAAGTTTACAAGCCTTTCTTCTGCCCTGCACCAAGAAAAA +
Preference number: 2 (lower is better)
Translates to: DQMMNIKRSHKHKQH*VKFTSLSSALHQEK
Trigger: TTTTTCTTGGTGCAGGGCAGAAGAAAGGCTTGTAAACTTCACCAAATGCTGCTTATGCTTGTGGGATCGTTTAATGTTCATCATTTGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 2 (lower is better)
Translates to: ALKHCSINNFESYNPVIGPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 2 (lower is better)
Translates to: HSSQCFFLLLATVETEFFPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 2 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCACCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 2 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR TCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCAGACTGGATTTTGCTaGCTTTATCTTTGTGGTTTC +
Preference number: 2 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRQTGFC*LYLCGF
Trigger: GAAACCACAAAGATAAAGTCAGCAAAATCCAGTCTG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAACTGACTTTATCTTTGTaGTTTCTCCTAACATTTGGC +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQRELTLSL*FLLTFG
Trigger: GCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAG...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAACAATTCCCTACAAGATaGTTGACTAATCTACAGTAC +
Preference number: 2 (lower is better)
Translates to: QVLSVVPFLGSQELYQREQFPTR*LTNLQY
Trigger: GTACTGTAGATTAGTCAACCATCTTGTAGGGAATTG...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTATTACTGGCAACTGTaGAGACAGAGTTCTTCCAGT +
Preference number: 2 (lower is better)
Translates to: ALKHCSINNFESYNPVIGYYWQL*RQSSSS
Trigger: ACTGGAAGAACTCTGTCTCCACAGTTGCCAGTAATA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR CCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAAAGAGTATTTATTCTTaGCGAGGCACAGTGGCTCAT +
Preference number: 2 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPKSIYS*RGTVAH
Trigger: ATGAGCCACTGTGCCTCGCCAAGAATAAATACTCTT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 90 bp AGAAACCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTaGCTGACTTTATCTTTGTGGTTTCTCCTAACATTTGGCTTGGTC +
Preference number: 2 (lower is better)
Translates to: RNLVICPVQLYADWI*LTLSLWFLLTFGLV
Trigger: GACCAAGCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 2 (lower is better)
Translates to: IALKHCSINNFESYNPVIPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR CAA 90 bp TGGATTTTGCTGACTTTATCTTTGTGGTTTCTCCTAACATTTGGCTaGGTCTTCTGTTCTGTAAATTGGTGGTTGAATCTAGACAGGTTT +
Preference number: 2 (lower is better)
Translates to: WILLTLSLWFLLTFG*VFCSVNWWLNLDRF
Trigger: AAACCTGTCTAGATTCAACCACCAATTTACAGAACAGAAGACCAAGCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAGCAAAATCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 90 bp TTAAAATGTGATTGTGCCCTCTATAAACAATTCCCTACAAGATGGTaGACTAATCTACAGTACATGAATGGGTTTCTGGAGGCTATGAGT +
Preference number: 2 (lower is better)
Translates to: LKCDCALYKQFPTRW*TNLQYMNGFLEAMS
Trigger: ACTCATAGCCTCCAGAAACCCATTCATGTACTGTAGATTAGTCAACCATCTTGTAGGGAATTGTTTATAGAGGGCACAATCACATTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTATTACTGGCAACTGTaGAGACAGAGTTCTTCCAGT +
Preference number: 2 (lower is better)
Translates to: IALKHCSINNFESYNPVIYYWQL*RQSSSS
Trigger: ACTGGAAGAACTCTGTCTCCACAGTTGCCAGTAATA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGTTTCTTTTTATTACTaGCAACTGTGGAGACAGAGT +
Preference number: 2 (lower is better)
Translates to: ALKHCSINNFESYNPVIGVSFYY*QLWRQS
Trigger: ACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAAC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR CAA 90 bp CTGCATCCTATCCTTAATTTCCTTTTAATCACTACTCGAAAAAGTTaGAGAAACCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGG +
Preference number: 2 (lower is better)
Translates to: LHPILNFLLITTRKS*RNLVICPVQLYADW
Trigger: CCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCTCAAACTTTTTCGAGTAGTGATTAAAAGGAAATTAAGGATAGGATGCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR TCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTATTCCCATTCCTTAGTTaGCTAATTCTTCACCTTGTA +
Preference number: 2 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLFPFLS*LILHLV
Trigger: TACAAGGTGAAGAATTAGTCAACTAAGGAATGGGAA...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCACAACTTTATGCAGACTaGATTTTGCTGACTTTATCT +
Preference number: 2 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPQLYAD*ILLTLS
Trigger: AGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTG...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGTTTCTTTTTATTACTaGCAACTGTGGAGACAGAGT +
Preference number: 2 (lower is better)
Translates to: IALKHCSINNFESYNPVIVSFYY*QLWRQS
Trigger: ACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAAC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR CCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTCATACAGCTCTTTGTTaGCAGCTATTTGTCAGTAAA +
Preference number: 2 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCHTALC*QLFVSK
Trigger: TTTACTGACAAATAGCTGCCAACAAAGAGCTGTATG...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR GCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTATTTGTGACCATGGCTaGTATAGAATTATCCATTCT +
Preference number: 2 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCICDHG*YRIIHS
Trigger: AGAATGGATAATTCTATAGCAGCCATGGTCACAAAT...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACTCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 3 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNSSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGGGCTTTTCCTGTTGCTaGTTGAACCGGTTCCCAGCT +
Preference number: 3 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWGFSCC*LNRFPA
Trigger: AGCTGGGAACCGGTTCAACAAGCAACAGGAAAAGCC...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR TCA 72 bp ATCTCGGCTTACTGCAACCTCAGCCTCCCGAGTAACTaGGATTACAGGCGCCCACCACCACATCTAATTTTT +
Preference number: 3 (lower is better)
Translates to: ISAYCNLSLPSN*DYRRPPPHLIF
Trigger: AAAAATTAGATGTGGTGGTGGGCGCCTGTAATCTCAGTTACTCGGGAGGCTGAGGTTGCAGTAAGCCGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR GCA 72 bp CTGCAGTATGCTATGACTGCATCTGTGACTAGCCACTaGACTCCAGCAAGCAACATAGCAAGACCCATCTCT +
Preference number: 3 (lower is better)
Translates to: LQYAMTASVTSH*TPASNIARPIS
Trigger: AGAGATGGGTCTTGCTATGTTGCTTGCTGGAGTGCAGTGGCTAGTCACAGATGCAGTCATAGCATACTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 3 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWSKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CAA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCCCCAAGTTCAAGCGATaGTCCCACCTCAGCCTCCCA +
Preference number: 3 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFPKFKR*SHLSLP
Trigger: TGGGAGGCTGAGGTGGGACAATCGCTTGAACTTGGG...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCT +
Preference number: 3 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWICFVG*GHLKSS
Trigger: AGATGACTTCAGATGTCCCAATCCGACAAAGCAGAT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CAA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGTTTTCCTGTTGCTTGTaGAACCGGTTCCCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKFSCCL*NRFPAA
Trigger: GGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAAA...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR GCA 72 bp GTGAGTACAAAACTATGGGCTCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGCAAAGACTTAAGCAGC +
Preference number: 3 (lower is better)
Translates to: VSTKLWAPPAAT*MKGIPSKDLSS
Trigger: GCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR GCA 72 bp TCCAGAAAGGGTGAGTACAAAACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGGGATTCCAAGCAAAGA +
Preference number: 3 (lower is better)
Translates to: SRKGEYKTMGSS*CNLHERDSKQR
Trigger: TCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR-3UTR CAA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACTTCCCTACAAGATGGTaGACTAATCTACAGTACATG +
Preference number: 3 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNFPTRW*TNLQYM
Trigger: CATGTACTGTAGATTAGTCAACCATCTTGTAGGGAA...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 3 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000473533.6
3UTR CCA 72 bp GAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTaGATGACTAGTTTCAGACTCTTCATACCAAGAATA +
Preference number: 3 (lower is better)
Translates to: ETGRYSSPPPVD*MTSFRLFIPRI
Trigger: TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 3 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR TCA 72 bp GCCTCCCATTCATGGACTTCATGGTATAAAGTGACTTaGAATATTCTGACTGCTATGGGGATGAGACTGACC +
Preference number: 3 (lower is better)
Translates to: ASHSWTSWYKVT*NILTAMGMRLT
Trigger: GGTCAGTCTCATCCCCATAGCAGTCAGAATATTTCAAGTCACTTTATACCATGAAGTCCATGAATGGGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 3 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKSTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 3 (lower is better)
Translates to: ALKHCSINNFESYNPVIGSTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 3 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR-3UTR CAA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 3 (lower is better)
Translates to: PSHLSCTTLCRLDFADFISTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCTCCTAACATTTGGCTaGGTCTTCTGTTCTGTAAAT +
Preference number: 3 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRLLTFG*VFCSVN
Trigger: ATTTACAGAACAGAAGACCAAGCCAAATGTTAGGAG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 72 bp CAATCACCATTTGGTTATTTCAGTAAAACTACTACATaGAGGCAGGAGAGTAGTTCCATCAGGAAACACATA +
Preference number: 3 (lower is better)
Translates to: QSPFGYFSKTTT*RQESSSIRKHI
Trigger: TATGTGTTTCCTGATGGAACTACTCTCCTGCCTCCATGTAGTAGTTTTACTGAAATAACCAAATGGTGATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 72 bp TGTGATTGTGCCCTCTATAAACAATTCCCTACAAGATaGTTGACTAATCTACAGTACATGAATGGGTTTCTG +
Preference number: 3 (lower is better)
Translates to: CDCALYKQFPTR*LTNLQYMNGFL
Trigger: CAGAAACCCATTCATGTACTGTAGATTAGTCAACCATCTTGTAGGGAATTGTTTATAGAGGGCACAATCACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCATGAACACTCGTAGATaGAACATTCTGCAAGTAAGA +
Preference number: 3 (lower is better)
Translates to: HSSQCFFLLLATVETEFFMNTRR*NILQVR
Trigger: TCTTACTTGCAGAATGTTCAATCTACGAGTGTTCAT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR GCA 72 bp TTTGAGAAACCTAGTCATTTGTCCTGTACAACTTTATaGAGACTGGATTTTGCTGACTTTATCTTTGTGGTT +
Preference number: 3 (lower is better)
Translates to: FEKPSHLSCTTL*RLDFADFIFVV
Trigger: AACCACAAAGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCTCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR GCA 72 bp ACAGCTCAGAGTCTACTTCTTCATATAACTTTGAACTaGTACAAGTGTAAAGGGTACTATTTGTTACACCTA +
Preference number: 3 (lower is better)
Translates to: TAQSLLLHITLN*YKCKGYYLLHL
Trigger: TAGGTGTAACAAATAGTACCCTTTACACTTGTAGCAGTTCAAAGTTATATGAAGAAGTAGACTCTGAGCTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CCA 72 bp AAACTGGAAAGAGTATCTATTACCAAAAATATTGCTTaGCTAGTCCATAGTCTATCCCTGTTATCCTATTCC +
Preference number: 3 (lower is better)
Translates to: KLERVSITKNIA*LVHSLSLLSYS
Trigger: GGAATAGGATAACAGGGATAGACTATGGACTAGCCAAGCAATATTTTTGGTAATAGATACTCTTTCCAGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCGTCAGCGACCCGGATaGAGCGGGCGGGGAAGAACG +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETERQRPG*SGRGRT
Trigger: CGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TGGGCTCCTCCTGCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCAAAAGCGGACGCCACTaGTGTCCAGTCCAGAGACAG +
Preference number: 4 (lower is better)
Translates to: WAPPAATCMKGIPSKDLSKSGRH*CPVQRQ
Trigger: CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTT...GCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR GCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATACCGAGATCACCCCACTaGACTCCAGCCTGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRIPRSPH*TPAWAR
Trigger: TCTGGCCCAGGCTGGAGTGCAGTGGGGTGATCTCGG...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACGAATTATGGCCCAACTaGCCATACCCTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNELWPN*PYPPAP
Trigger: TGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTC...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTTTCCTGTTGCTTGTTaGACCGGTTCCCAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWFPVAC*TGSQLP
Trigger: GGGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCCAGGAGGCGGAGGTTaGAGTGAGCCGAGATCACCC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRPGGGG*SEPRSP
Trigger: GGGTGATCTCGGCTCACTGCAACCTCCGCCTCCTGG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATCGTCAGCGACCCGGATaGAGCGGGCGGGGAAGAACG +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDRQRPG*SGRGRT
Trigger: CGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACG...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR TCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCGGCAGGAGGATGGCGTaGGCCCAGTTCAAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFGRRMA*AQFKAA
Trigger: TGCAGCTTTGAACTGGGCTCACGCCATCCTCCTGCC...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATAGCAGTGGCGCGATCTTaGTTCACCGCAACCTCCATC +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRIAVARS*FTATSI
Trigger: GATGGAGGTTGCGGTGAACCAAGATCGCGCCACTGC...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp AGAGCTTCATTCACTGTCCAGATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCTGGTGGCCCACAGTTC +
Preference number: 4 (lower is better)
Translates to: RASFTVQICFVG*GHLKSSGGPQF
Trigger: GAACTGTGGGCCACCAGATGACTTCAGATGTCCCAATCCGACAAAGCAGATCTGGACAGTGAATGAAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATATCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRISDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp TTGTTGAACCGGTTCCCAGCTGCCCATTACCACCAAGCCCAAAAGAGTAAATTCCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: LLNRFPAAHYHQAQKSKFPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...GAATTTACTCTTTTGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTCAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCGTCAGCGACCCGGATaGAGCGGGCGGGGAAGAACG +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIRQRPG*SGRGRT
Trigger: CGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATAAGTGAGGCAGGAGGATaGCGTGAGCCCAGTTCAAAG +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRISEAGG*REPSSK
Trigger: CTTTGAACTGGGCTCACGCCATCCTCCTGCCTCACT...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGTCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWSLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTGAATTATGGCCCAACTaGCCATACCCTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFELWPN*PYPPAP
Trigger: TGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTC...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTTCCTGTTGCTTGTTaGACCGGTTCCCAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFPVAC*TGSQLP
Trigger: GGGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETESDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TGGGCTCCTCCTGCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCCAAACACAGTATGTCTaGGTCCACATCCTACATCTC +
Preference number: 4 (lower is better)
Translates to: WAPPAATCMKGIPSKDLSQTQYV*VHILHL
Trigger: GAGATGTAGGATGTGGACTCAGACATACTGTGTTTG...GCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR GCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCGAACCGGTTCCCAGCTaGCCATTACCACCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFEPVPS*PLPPSP
Trigger: TGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTC...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAAAAGCGGACGCCACTaGTGTCCAGTCCAGAGACAG +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEKSGRH*CPVQRQ
Trigger: CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATATCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRISEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAACCCCAAGCATACACCTaGCCTTTGTCATTTAGCGCT +
Preference number: 4 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEPQAYT*PLSFSA
Trigger: AGCGCTAAATGACAAAGGCCAGGTGTATGCTTGGGG...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGCGGGTTGGAGTGCAGTaGCATGATCTCGGCTTACTG +
Preference number: 4 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKRVGVQ*HDLGLL
Trigger: CAGTAAGCCGAGATCATGCCACTGCACTCCAACCCG...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAAAGCCTCCCAATTAGCTaGGATTACAGGCATGGGCCA +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQRESLPIS*DYRHGP
Trigger: TGGCCCATGCCTGTAATCCCAGCTAATTGGGAGGCT...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTGTAGTCCCAGCTACTTaGGAGAGTGAGGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISVVPAT*ESEAGG
Trigger: TCCTCCTGCCTCACTCTCCCAAGTAGCTGGGACTAC...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGAATTATGGCCCAACTaGCCATACCCTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKELWPN*PYPPAP
Trigger: TGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TGGGCTCCTCCTGCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCCTGAAGCCTTCATTGTaGTCAATAGCTTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: WAPPAATCMKGIPSKDLSLKPSL*SIAWIS
Trigger: ACTGATCCAAGCTATTGATCACAATGAAGGCTTCAG...GCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCTGATGCATTCCTCTaGTCCTACCAGGCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETESDAFL*SYQAKL
Trigger: CAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGAACCGGTTCCCAGCTaGCCATTACCACCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFEPVPS*PLPPSP
Trigger: TGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKPPKPS*PKDAFP
Trigger: GGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRPPKPS*PKDAFP
Trigger: GGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCATTGCCCAGGCTGGAGTaGAGTGGCGCGATCTTGGTT +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPLPRLE*SGAILV
Trigger: AACCAAGATCGCGCCACTGCACTCCAGCCTGGGCAA...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACTTCAAAGCTGCAGTATaGTATGACTGCATCTGTGAC +
Preference number: 4 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNFKAAV*YDCICD
Trigger: GTCACAGATGCAGTCATAGCATACTGCAGCTTTGAA...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETESEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKTSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRTSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp AGGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: RQPEEENVPSISLAISTGTSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...TCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTCTGCTGCAACTTGCATaGAAGGGATTCCAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFLLQLA*KGFQAK
Trigger: CTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAG...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp TTGTTGAACCGGTTCCCAGCTGCCCATTACCACCAAGCCCAAAAGAGTAAATTCCTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 4 (lower is better)
Translates to: LLNRFPAAHYHQAQKSKFLGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...GAATTTACTCTTTTGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTCAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTTTCCTGTTGCTTGTTaGACCGGTTCCCAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFFPVAC*TGSQLP
Trigger: GGGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTTTCCTGTTGCTTGTTaGACCGGTTCCCAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDFPVAC*TGSQLP
Trigger: GGGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTCGGATTGGGACATCTaGAGTCATCTGGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDSDWDI*SHLVAH
Trigger: GTGGGCCACCAGATGACTTCAGATGTCCCAATCCGA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCTTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATACTCCTGTGGACTGGATaGCTAGTTTCAGACTCTTCA +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRILLWTG*LVSDSS
Trigger: TGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAG...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTAGAACCGGTTCCCAGCTaGCCATTACCACCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLEPVPS*PLPPSP
Trigger: TGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTC...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKRGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETERGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRRGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp AGGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGACTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 4 (lower is better)
Translates to: RQPEEENVPSISLAISTGLFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...TCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAAAAGCGGACGCCACTaGTGTCCAGTCCAGAGACAG +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGKSGRH*CPVQRQ
Trigger: CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTGTTGAACCGGTTCCCAGCTGCCCATTACCACCAAGCCCAAAAGAGTAAATTCTTCCATCTATCTCATTaGCTATCTCCACAGGAAACC +
Preference number: 4 (lower is better)
Translates to: LLNRFPAAHYHQAQKSKFFHLSH*LSPQET
Trigger: GGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAA...GAATTTACTCTTTTGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTCAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACAAAGCCAAAGGAAAATaGAGGTCCACAATGGTACAA +
Preference number: 4 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNKAKGK*RSTMVQ
Trigger: TTGTACCATTGTGGACCTCCATTTTCCTTTGGCTTT...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACCACCTCCTGTGGACTaGATGACTAGTTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKPPPVD*MTSFRL
Trigger: GAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TGGGCTCCTCCTGCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCCACATCAACAGAAAATaGAGTTCTTATCGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: WAPPAATCMKGIPSKDLSHINRK*SSYRVP
Trigger: AGGAACCCGATAAGAACTCCATTTTCTGTTGATGTG...GCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGAAACCCCGGAAAGTTaGAGGTACCCTATGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKETPES*RYPMSP
Trigger: TGGAGACATAGGGTACCTCCAACTTTCCGGGGTTTC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCGAAACCCCGGAAAGTTaGAGGTACCCTATGTCTCCA +
Preference number: 4 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFETPES*RYPMSP
Trigger: TGGAGACATAGGGTACCTCCAACTTTCCGGGGTTTC...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCCCCAAGCATACACCTaGCCTTTGTCATTTAGCGCT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEPQAYT*PLSFSA
Trigger: AGCGCTAAATGACAAAGGCCAGGTGTATGCTTGGGG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGTCCGGAGCAAATTCTaGCCAGAGAGTCGACACACA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFVRSKF*PESRHT
Trigger: TGTGTGTCGACTCTCTGGTCAGAATTTGCTCCGGAC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR TCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTCTGCTGCAACTTGCATaGAAGGGATTCCAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISLLQLA*KGFQAK
Trigger: CTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAG...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETESLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGTCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRSLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGAATTATGGCCCAACTaGCCATACCCTCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGELWPN*PYPPAP
Trigger: TGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQREWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACTCCTGTGGACTGGATaGCTAGTTTCAGACTCTTCA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKLLWTG*LVSDSS
Trigger: TGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATACAAACACAGTATGTCTaGGTCCACATCCTACATCTC +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRIQTQYV*VHILHL
Trigger: GAGATGTAGGATGTGGACTCAGACATACTGTGTTTG...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTCTGATGCATTCCTCTaGTCCTACCAGGCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSDAFL*SYQAKL
Trigger: CAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTCTGATGCATTCCTCTaGTCCTACCAGGCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDSDAFL*SYQAKL
Trigger: CAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAACTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQRELFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGCAAGAAAAATTCTTTaGGCACCCCTCCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKARKIL*APLLHP
Trigger: TGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAGCAAGAAAAATTCTTTaGGCACCCCTCCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: STDHQFSSTFSGAFSRFTARKIL*APLLHP
Trigger: TGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGC...TGTGAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGPPKPS*PKDAFP
Trigger: GGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATCCAGGGCAACAACCTaGTCTGGTTTCTTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSRATT*SGFFLD
Trigger: ATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTTCTGTGACTAGCCACTaGACTCCAGCAAGCAACATA +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISSVTSH*TPASNI
Trigger: TATGTTGCTTGCTGGAGTGCAGTGGCTAGTCACAGA...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDSEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGTSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPTSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GAGCAAGAAAAATTCTTTGCGCACCCCTCCTGCATCCACAGCATCTTCTCCAACGGTTGTATAAGTTTGTaGAATAAAAGCCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: EQEKFFAHPSCIHSIFSNGCISL*NKSLAA
Trigger: TGCTGCTAGGCTTTTATTCCACAAACTTATACAACC...GTTGGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCCCACCTCCTGTGGACTaGATGACTAGTTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFPPPVD*MTSFRL
Trigger: GAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGG...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETETSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATGCATACTAGGCAGATaGTACATTGACCTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKCILGR*YIDLFS
Trigger: GCTGAACAGGTCAATGTATCATCTGCCTAGTATGCA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGAGAGTCGACACACATaGTTTTCGGGAAGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGESRHT*FSGSSF
Trigger: GAAGCTGCTTCCCGAAAATCATGTGTGTCGACTCTC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTTCCTGTTGCTTGTTaGACCGGTTCCCAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFPVAC*TGSQLP
Trigger: GGGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTGTTGAACCGGTTCCCAGCTGCCCATTACCACCAAGCCCAAAAGAGTAAATTCGCTGTTGGACCCAGTTaGTATAATCATTTCTTATGT +
Preference number: 4 (lower is better)
Translates to: LLNRFPAAHYHQAQKSKFAVGPS*YNHFLC
Trigger: ACATAAGAAATGATTATATCAACTGGGTCCAACAGC...GAATTTACTCTTTTGGGCTTGGTGGTAATGGGCAGCTGGGAACCGGTTCAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 4 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAAAGCTATAACCCAGTaGTTGGTGCTCATAGTAGCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEKAITQ*LVLIVA
Trigger: GGCTACTATGAGCACCAATCACTGGGTTATAGCTTT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACAAACACAGTATGTCTaGGTCCACATCCTACATCTC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKQTQYV*VHILHL
Trigger: GAGATGTAGGATGTGGACTCAGACATACTGTGTTTG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAATTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCA +
Preference number: 4 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEFLDFS*PSCPRS
Trigger: TGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAA...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATTTAGCGCTAACGTATaGGCTTCTCCACATGAAACA +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQREFSANV*ASPHET
Trigger: TGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAACAGACTGGATTTTGCTaGCTTTATCTTTGTGGTTTC +
Preference number: 4 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEQTGFC*LYLCGF
Trigger: GAAACCACAAAGATAAAGTCAGCAAAATCCAGTCTG...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGG +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGTMGSS*CNLHER
Trigger: CCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGG +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPTMGSS*CNLHER
Trigger: CCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGRGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAGGGGCTTTTCCTGTTaGTTGTTGAACCGGTTCCCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFRGFSC*LLNRFP
Trigger: TGGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETELFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKLFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTTGCGCACCCCTCCTaGATCCACAGCATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFAHPS*IHSIFS
Trigger: GGAGAAGATGCTGTGGATGCAGGAGGGGTGCGCAAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAGTACCTAAACCCAATTaGCCATATTTATTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEVPKPN*PYLFCP
Trigger: GGGACAGAATAAATATGGCCAATTGGGTTTAGGTAC...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAACACTCCACCTTCCTTaGTTAGAGCAGCAGTATGAT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKTLHLP*LEQQYD
Trigger: ATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGGGTTGTATAAGTTTGTaGAATAAAAGCCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWGCISL*NKSLAA
Trigger: TGCTGCTAGGCTTTTATTCCACAAACTTATACAACC...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCCACCTCCTGTGGACTaGATGACTAGTTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFPPPVD*MTSFRL
Trigger: GAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFTSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGACAGCTACAATATTTTaGGCATCCAGGGCAACAACC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETETATIF*ASRATT
Trigger: GGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAACAGCTACAATATTTTaGGCATCCAGGGCAACAACC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKTATIF*ASRATT
Trigger: GGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGACAGCTACAATATTTTaGGCATCCAGGGCAACAACC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRTATIF*ASRATT
Trigger: GGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGT...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCCCCAAGCATACACCTaGCCTTTGTCATTTAGCGCT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFPQAYT*PLSFSA
Trigger: AGCGCTAAATGACAAAGGCCAGGTGTATGCTTGGGG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATAAGTAAAACTACTACATaGAGGCAGGAGAGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRISKTTT*RQESSS
Trigger: GGAACTACTCTCCTGCCTCCATGTAGTAGTTTTACT...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATAAAGAGTATTTATTCTTaGCGAGGCACAGTGGCTCAT +
Preference number: 4 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRIKSIYS*RGTVAH
Trigger: ATGAGCCACTGTGCCTCGCCAAGAATAAATACTCTT...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp ATGAACATTAAACGATCCCACAAGCATAAGCAGCATTaGGTGAAGTTTACAAGCCTTTCTTCTGCCCTGCAC +
Preference number: 4 (lower is better)
Translates to: MNIKRSHKHKQH*VKFTSLSSALH
Trigger: GTGCAGGGCAGAAGAAAGGCTTGTAAACTTCACCAAATGCTGCTTATGCTTGTGGGATCGTTTAATGTTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCTGCTGCAACTTGCATaGAAGGGATTCCAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGLLQLA*KGFQAK
Trigger: CTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSLRPS*PNLLRP
Trigger: GGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKLGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAGGGACTAGAGTAATGTaGAAAGCTTTGATCTCCCCC +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPGTRVM*KALISP
Trigger: GGGGGAGATCAAAGCTTTTCACATTACTCTAGTCCC...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTCTGCCTGTGGGCCTaGTCAATAGCCATCTGCATC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFCLWA*SIAICI
Trigger: GATGCAGATGGCTATTGATCAGGCCCACAGGCAGAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQRECSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTCCTGTGGACTGGATaGCTAGTTTCAGACTCTTCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLLWTG*LVSDSS
Trigger: TGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATCTCCTGTGGACTGGATaGCTAGTTTCAGACTCTTCA +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDLLWTG*LVSDSS
Trigger: TGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAG...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCTGAAGCCTTCATTGTaGTCAATAGCTTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETELKPSL*SIAWIS
Trigger: ACTGATCCAAGCTATTGATCACAATGAAGGCTTCAG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCTGAAGCCTTCATTGTaGTCAATAGCTTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRLKPSL*SIAWIS
Trigger: ACTGATCCAAGCTATTGATCACAATGAAGGCTTCAG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCCCTCTGTCACCTTGCTaGATTCATCACCACAAGAAA +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFPLSPC*IHHHKK
Trigger: TTTCTTGTGGTGATGAATTCAGCAAGGTGACAGAGG...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTTAGCGCTAACGTATaGGCTTCTCCACATGAAACA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFSANV*ASPHET
Trigger: TGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATTTAGCGCTAACGTATaGGCTTCTCCACATGAAACA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKFSANV*ASPHET
Trigger: TGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAGCTGCGGTGAAGTTTaGTTTTTACAGTCAGTACCT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSCGEV*FLQSVP
Trigger: AGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGAGCTGCGGTGAAGTTTaGTTTTTACAGTCAGTACCT +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRSCGEV*FLQSVP
Trigger: AGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCT...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGG +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYTMGSS*CNLHER
Trigger: CCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGT...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGCAAGAAAAATTCTTTaGGCACCCCTCCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFARKIL*APLLHP
Trigger: TGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGCAAGAAAAATTCTTTaGGCACCCCTCCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGARKIL*APLLHP
Trigger: TGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCGCAAGAAAAATTCTTTaGGCACCCCTCCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFIARKIL*APLLHP
Trigger: TGGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGC...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIPPKPS*PKDAFP
Trigger: GGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTCCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCC +
Preference number: 4 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCPPKPS*PKDAFP
Trigger: GGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTCCAGGGCAACAACCTaGTCTGGTTTCTTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGSRATT*SGFFLD
Trigger: ATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCACACTCCACCTTCCTTaGTTAGAGCAGCAGTATGAT +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFTLHLP*LEQQYD
Trigger: ATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGT...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTCTGAAGTCATCTGGTaGCCCACAGTTCTGGGGACT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVISEVIW*PTVLGT
Trigger: AGTCCCCAGAACTGTGGGCCACCAGATGACTTCAGA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTACATCTGAAGTCATCTaGTGGCCCACAGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVITSEVI*WPTVLG
Trigger: CCCCAGAACTGTGGGCCACCAGATGACTTCAGATGT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACCCACCTCCTGTGGACTaGATGACTAGTTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYPPPVD*MTSFRL
Trigger: GAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGG...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGTSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFTSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGGCAACAACCTGCTCTaGTTTCTTTCTGGATTTTTC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKGNNLL*FLSGFF
Trigger: GAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
3UTR CAA 72 bp GCTGTACCAAAGGGAATTGCTATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGACATTCTGGTAGAGTA +
Preference number: 4 (lower is better)
Translates to: AVPKGIAIVVKL*ESLIRGHSGRV
Trigger: TACTCTACCAGAATGTCCCCTGATGAGTGATTCCAACAATTTCACAACAATAGCAATTCCCTTTGGTACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR CAA 72 bp AGAGCTGTACCAAAGGGAATTGCTATTGTTGTGAAATaGTTGGAATCACTCATCAGGGGACATTCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: RAVPKGIAIVVK*LESLIRGHSGR
Trigger: TCTACCAGAATGTCCCCTGATGAGTGATTCCAACAATTTCACAACAATAGCAATTCCCTTTGGTACAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAGGCAGATGATACATTaGCCTGTTCAGCATATTAAG +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKRQMIH*PVQHIK
Trigger: CTTAATATGCTGAACAGGTCAATGTATCATCTGCCT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGTTAGAGCAGCAGTATaGTCTTCTCCACAACAAATA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEVRAAV*SSPQQI
Trigger: TATTTGTTGTGGAGAAGATCATACTGCTGCTCTAAC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAATTCATATCAACCCCTaGAAATCTGGTACCTGTTCT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKIHINP*KSGTCS
Trigger: AGAACAGGTACCAGATTTTCAGGGGTTGATATGAAT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGATTCATATCAACCCCTaGAAATCTGGTACCTGTTCT +
Preference number: 4 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKIHINP*KSGTCS
Trigger: AGAACAGGTACCAGATTTTCAGGGGTTGATATGAAT...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTATTCATATCAACCCCTaGAAATCTGGTACCTGTTCT +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISIHINP*KSGTCS
Trigger: AGAACAGGTACCAGATTTTCAGGGGTTGATATGAAT...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAAAAAGTTCTACTATCTTaGGGAATAGTGGAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQREKVLLS*GIVEVQ
Trigger: TTGAACCTCCACTATTCCTCAAGATAGTAGAACTTT...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETECSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGTGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRCSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAAAGCTATAACCCAGTaGTTGGTGCTCATAGTAGCC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFKAITQ*LVLIVA
Trigger: GGCTACTATGAGCACCAATCACTGGGTTATAGCTTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCAAACACAGTATGTCTaGGTCCACATCCTACATCTC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGQTQYV*VHILHL
Trigger: GAGATGTAGGATGTGGACTCAGACATACTGTGTTTG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFLDFS*PSCPRS
Trigger: TGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCA +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISFLDFS*PSCPRS
Trigger: TGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAA...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCCTCCTGCTGCAACTTaGATGAAAGGGATTCCAAGC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIPPAAT*MKGIPS
Trigger: GCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTACTATGGGCTCCTCCTaGTGCAACTTGCATGAAAGG +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVITMGSS*CNLHER
Trigger: CCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTTTTCCAAACTAGCTaGCACCTGCTGAGATATCTG +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLFQTS*HLLRYL
Trigger: CAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAACCTAAGGACTTCCATTaGATCTCCTACAATATTTTC +
Preference number: 4 (lower is better)
Translates to: QVLSVVPFLGSQELYQREPKDFH*ISYNIF
Trigger: GAAAATATTGTAGGAGATGCAATGGAAGTCCTTAGG...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp TATTTCATGACTGGTAGAATTATGGCCCAACTGACCATACCCTCCAGCTCCAAACCTAAGGACTTCCATTaGATCTCCTACAATATTTTC +
Preference number: 4 (lower is better)
Translates to: YFMTGRIMAQLTIPSSSKPKDFH*ISYNIF
Trigger: GAAAATATTGTAGGAGATGCAATGGAAGTCCTTAGG...TTTGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTCTACCAGTCATGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR GCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTATCCAGGGCAACAACCTaGTCTGGTTTCTTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLSRATT*SGFFLD
Trigger: ATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGA...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGTACCTAAACCCAATTaGCCATATTTATTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEVPKPN*PYLFCP
Trigger: GGGACAGAATAAATATGGCCAATTGGGTTTAGGTAC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCGTACCTAAACCCAATTaGCCATATTTATTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFVPKPN*PYLFCP
Trigger: GGGACAGAATAAATATGGCCAATTGGGTTTAGGTAC...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCACACTCCACCTTCCTTaGTTAGAGCAGCAGTATGAT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFTLHLP*LEQQYD
Trigger: ATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTACACTCCACCTTCCTTaGTTAGAGCAGCAGTATGAT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGTLHLP*LEQQYD
Trigger: ATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAAAGCCAAAGGAAAATaGAGGTCCACAATGGTACAA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEKAKGK*RSTMVQ
Trigger: TTGTACCATTGTGGACCTCCATTTTCCTTTGGCTTT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAAAGCCAAAGGAAAATaGAGGTCCACAATGGTACAA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKKAKGK*RSTMVQ
Trigger: TTGTACCATTGTGGACCTCCATTTTCCTTTGGCTTT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCCACCTCCTGTGGACTaGATGACTAGTTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIPPPVD*MTSFRL
Trigger: GAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAACACATCAACAGAAAATaGAGTTCTTATCGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKHINRK*SSYRVP
Trigger: AGGAACCCGATAAGAACTCCATTTTCTGTTGATGTG...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGAAACCCCGGAAAGTTaGAGGTACCCTATGTCTCCA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIETPES*RYPMSP
Trigger: TGGAGACATAGGGTACCTCCAACTTTCCGGGGTTTC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCACAGCTACAATATTTTaGGCATCCAGGGCAACAACC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFTATIF*ASRATT
Trigger: GGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTTAGAAAGTGCAAGTaGATGATAGTAACCACAAGC +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEFRKCK*MIVTTS
Trigger: GCTTGTGGTTACTATCATTCACTTGCACTTTCTAAA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATTTAGAAAGTGCAAGTaGATGATAGTAACCACAAGC +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKFRKCK*MIVTTS
Trigger: GCTTGTGGTTACTATCATTCACTTGCACTTTCTAAA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCTTTAGAAAGTGCAAGTaGATGATAGTAACCACAAGC +
Preference number: 4 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFFRKCK*MIVTTS
Trigger: GCTTGTGGTTACTATCATTCACTTGCACTTTCTAAA...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCTGCTGCAACTTGCATaGAAGGGATTCCAAGCAAAG +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVILLQLA*KGFQAK
Trigger: CTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACTGGAGGTTCAAGTACTaGCCACCAGTTTTCAAGTAC +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYWRFKY*PPVFKY
Trigger: GTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCA...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAAAGTTCTACTATCTTaGGGAATAGTGGAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKKVLLS*GIVEVQ
Trigger: TTGAACCTCCACTATTCCTCAAGATAGTAGAACTTT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGAAAGTTCTACTATCTTaGGGAATAGTGGAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRKVLLS*GIVEVQ
Trigger: TTGAACCTCCACTATTCCTCAAGATAGTAGAACTTT...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGCTGTTGGACCCAGTTaGTATAATCATTTCTTATGT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEAVGPS*YNHFLC
Trigger: ACATAAGAAATGATTATATCAACTGGGTCCAACAGC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCTCCTGTGGACTGGATaGCTAGTTTCAGACTCTTCA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVILLWTG*LVSDSS
Trigger: TGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCTGAAGCCTTCATTGTaGTCAATAGCTTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGLKPSL*SIAWIS
Trigger: ACTGATCCAAGCTATTGATCACAATGAAGGCTTCAG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTGAAGCCTTCATTGTaGTCAATAGCTTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLKPSL*SIAWIS
Trigger: ACTGATCCAAGCTATTGATCACAATGAAGGCTTCAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAATGAGCTTCTCCACATaGAACAGCTACAATATTTTG +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKMSFST*NSYNIL
Trigger: CAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCAT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCCTAATCTACAGTACATaGATGGGTTTCTGGAGGCTA +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFILIYST*MGFWRL
Trigger: TAGCCTCCAGAAACCCATTCATGTACTGTAGATTAG...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAGCTGCGGTGAAGTTTaGTTTTTACAGTCAGTACCT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSCGEV*FLQSVP
Trigger: AGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGCTCTTTCACTTCTGTTaGACCAAAGTTTTCAACTGT +
Preference number: 4 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKLFHFC*TKVFNC
Trigger: ACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAG...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGCATCGACAAACTCTTaGCGATTTTGTTTGTTAACA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEASTNS*RFCLLT
Trigger: TGTTAACAAACAAAATCGGCAAGAGTTTGTCGATGC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTGCATCGACAAACTCTTaGCGATTTTGTTTGTTAACA +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISASTNS*RFCLLT
Trigger: TGTTAACAAACAAAATCGGCAAGAGTTTGTCGATGC...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTCCAGGGCAACAACCTaGTCTGGTTTCTTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVISRATT*SGFFLD
Trigger: ATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTAACAGGTGTGAGCCACTaGATCCTATCCTTAATTTCC +
Preference number: 4 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLTGVSH*ILSLIS
Trigger: GGAAATTAAGGATAGGATGCAGTGGCTCACACCTGT...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGTGAGTACAAAACTATaGGCTCCTCCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIVSTKL*APPAAT
Trigger: AGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCAC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTTCCATCTATCTCATTaGCTATCTCCACAGGAAACC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGFHLSH*LSPQET
Trigger: GGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGGTTGTATAAGTTTGTaGAATAAAAGCCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEGCISL*NKSLAA
Trigger: TGCTGCTAGGCTTTTATTCCACAAACTTATACAACC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTACAAGTATGGGAAACTaGGAGATACTCCTCACCACC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVITSMGN*EILLTT
Trigger: GGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTATTACTGGCAACTGTaGAGACAGAGTTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFYYWQL*RQSSSS
Trigger: ACTGGAAGAACTCTGTCTCCACAGTTGCCAGTAATA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGTTTCTTTTTATTACTaGCAACTGTGGAGACAGAGT +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKVSFYY*QLWRQS
Trigger: ACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAAC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGTTTCTTTTTATTACTaGCAACTGTGGAGACAGAGT +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEVSFYY*QLWRQS
Trigger: ACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAAC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGGCAACAACCTGCTCTaGTTTCTTTCTGGATTTTTC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFGNNLL*FLSGFF
Trigger: GAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTTAGGAATAAGATTCTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGCTGACTTTATCTTTGTaGTTTCTCCTAACATTTGGC +
Preference number: 4 (lower is better)
Translates to: FRNKILFQTSCHLLRYLRLTLSL*FLLTFG
Trigger: GCCAAATGTTAGGAGAAACCACAAAGATAAAGTCAG...CCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTTATTCCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCTCTACAGTACATGAATaGGTTTCTGGAGGCTATGAG +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFISTVHE*VSGGYE
Trigger: CTCATAGCCTCCAGAAACCCATTCATGTACTGTAGA...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCCATACAGCTCTTTGTTaGCAGCTATTTGTCAGTAAA +
Preference number: 4 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFHTALC*QLFVSK
Trigger: TTTACTGACAAATAGCTGCCAACAAAGAGCTGTATG...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATAAGAAAGAATTGAACTaGGCTACAGTGGCACATGTC +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDKKELN*ATVAHV
Trigger: GACATGTGCCACTGTAGCCCAGTTCAATTCTTTCTT...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp GATTGTGCCCTCTATAAACAATTCCCTACAAGATGGTaGACTAATCTACAGTACATGAATGGGTTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: DCALYKQFPTRW*TNLQYMNGFLE
Trigger: CTCCAGAAACCCATTCATGTACTGTAGATTAGTCAACCATCTTGTAGGGAATTGTTTATAGAGGGCACAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp AGATGTACCACAACTTCCTTAAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCAAGTACTGACCACCAG +
Preference number: 4 (lower is better)
Translates to: RCTTTSLKSSTI*RNSGGSSTDHQ
Trigger: CTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGGAAGTTGTGGTACATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
3UTR CAA 72 bp AACAGGGATATCTGCCAACATTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATCATTTCTTATGTCTAT +
Preference number: 4 (lower is better)
Translates to: NRDICQHSIGLL*DPVDIIISYVY
Trigger: ATAGACATAAGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGATATCCCTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTTAACTACAAAACCTaGGAGCTGTACTGCTACAAT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLNYKT*ELYCYN
Trigger: ATTGTAGCAGTACAGCTCTCAGGTTTTGTAGTTAAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGTTAGAGCAGCAGTATaGTCTTCTCCACAACAAATA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGVRAAV*SSPQQI
Trigger: TATTTGTTGTGGAGAAGATCATACTGCTGCTCTAAC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCGTTAGAGCAGCAGTATaGTCTTCTCCACAACAAATA +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFIVRAAV*SSPQQI
Trigger: TATTTGTTGTGGAGAAGATCATACTGCTGCTCTAAC...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACCTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYLGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTATTCATATCAACCCCTaGAAATCTGGTACCTGTTCT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGIHINP*KSGTCS
Trigger: AGAACAGGTACCAGATTTTCAGGGGTTGATATGAAT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGCSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTGTAGTTCATTAGGCTaGAAGAGCAGAAGGACTTTT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFCSSLG*KSRRTF
Trigger: AAAAGTCCTTCTGCTCTTTCAGCCTAATGAACTACA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAAAGCTATAACCCAGTaGTTGGTGCTCATAGTAGCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIKAITQ*LVLIVA
Trigger: GGCTACTATGAGCACCAATCACTGGGTTATAGCTTT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCAAACACAGTATGTCTaGGTCCACATCCTACATCTC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIQTQYV*VHILHL
Trigger: GAGATGTAGGATGTGGACTCAGACATACTGTGTTTG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFFLDFS*PSCPRS
Trigger: TGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCTTCCCATTCCTTAGTTaGCTAATTCTTCACCTTGTA +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFFPFLS*LILHLV
Trigger: TACAAGGTGAAGAATTAGTCAACTAAGGAATGGGAA...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCTTGAAATATTCTGACTaGTATGGGGATGAGACTGAC +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFILKYSD*YGDETD
Trigger: GTCAGTCTCATCCCCATAGCAGTCAGAATATTTCAA...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTCATATAACTTTGAACTaGTACAAGTGTAAAGGGTAC +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISHITLN*YKCKGY
Trigger: GTACCCTTTACACTTGTAGCAGTTCAAAGTTATATG...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGCAACCTGTACAATCTaGATATCTGACAAACTTTTA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETEATCTI*ISDKLL
Trigger: TAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGCAACCTGTACAATCTaGATATCTGACAAACTTTTA +
Preference number: 4 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKATCTI*ISDKLL
Trigger: TAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGGCAACCTGTACAATCTaGATATCTGACAAACTTTTA +
Preference number: 4 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKATCTI*ISDKLL
Trigger: TAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGC...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGTACCTAAACCCAATTaGCCATATTTATTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGVPKPN*PYLFCP
Trigger: GGGACAGAATAAATATGGCCAATTGGGTTTAGGTAC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAGAGTAGTTTTTGCTTaGGCATCAAATACAAATGGA +
Preference number: 4 (lower is better)
Translates to: GAHSSQCFFLLLATVETERVVFA*ASNTNG
Trigger: TCCATTTGTATTTGATGCCCAAGCAAAAACTACTCT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp AGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGTAGTTTTTGCTTaGGCATCAAATACAAATGGA +
Preference number: 4 (lower is better)
Translates to: STDHQFSSTFSGAFSRFTRVVFA*ASNTNG
Trigger: TCCATTTGTATTTGATGCCCAAGCAAAAACTACTCT...TGTGAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTAGAGTAGTTTTTGCTTaGGCATCAAATACAAATGGA +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISRVVFA*ASNTNG
Trigger: TCCATTTGTATTTGATGCCCAAGCAAAAACTACTCT...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAAAGCCAAAGGAAAATaGAGGTCCACAATGGTACAA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFKAKGK*RSTMVQ
Trigger: TTGTACCATTGTGGACCTCCATTTTCCTTTGGCTTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
CDS-3UTR CCA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCAAAGCCAAAGGAAAATaGAGGTCCACAATGGTACAA +
Preference number: 4 (lower is better)
Translates to: PSHLSCTTLCRLDFADFIKAKGK*RSTMVQ
Trigger: TTGTACCATTGTGGACCTCCATTTTCCTTTGGCTTT...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTCACATCAACAGAAAATaGAGTTCTTATCGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGHINRK*SSYRVP
Trigger: AGGAACCCGATAAGAACTCCATTTTCTGTTGATGTG...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTAGGCAACAACCTGCTCTaGTTTCTTTCTGGATTTTTC +
Preference number: 4 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLGNNLL*FLSGFF
Trigger: GAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCC...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTCAACTTTATGCAGACTaGATTTTGCTGACTTTATCT +
Preference number: 4 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISQLYAD*ILLTLS
Trigger: AGATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTG...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp TCTCCTAACATTTGGCTTGGTCTTCTGTTCTGTAAATaGGTGGTTGAATCTAGACAGGTTTCAATCACCATT +
Preference number: 4 (lower is better)
Translates to: SPNIWLGLLFCK*VVESRQVSITI
Trigger: AATGGTGATTGAAACCTGTCTAGATTCAACCACCAATTTACAGAACAGAAGACCAAGCCAAATGTTAGGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCTTGGGTTTATTTCATaGCTGGTAGAATTATGGCCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVILGFIS*LVELWP
Trigger: GGGCCATAATTCTACCAGTCATGAAATAAACCCAAG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCATGAGCTTCTCCACATaGAACAGCTACAATATTTTG +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFMSFST*NSYNIL
Trigger: CAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCAT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTATGAGCTTCTCCACATaGAACAGCTACAATATTTTG +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGMSFST*NSYNIL
Trigger: CAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCAT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAATAAGCAGCATTTGGTaGAGTTTACAAGCCTTTCTT +
Preference number: 4 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPISSIW*SLQAFL
Trigger: AAGAAAGGCTTGTAAACTTCACCAAATGCTGCTTAT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAGCTGCGGTGAAGTTTaGTTTTTACAGTCAGTACCT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVISCGEV*FLQSVP
Trigger: AGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGKDLSS*GEVCFL
Trigger: TAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCCTAAGGACTTCCATTaGATCTCCTACAATATTTTC +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFPKDFH*ISYNIF
Trigger: GAAAATATTGTAGGAGATGCAATGGAAGTCCTTAGG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCTCTTTCACTTCTGTTaGACCAAAGTTTTCAACTGT +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFLFHFC*TKVFNC
Trigger: ACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATCTCTTTCACTTCTGTTaGACCAAAGTTTTCAACTGT +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDLFHFC*TKVFNC
Trigger: ACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAG...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR GCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGCATCGACAAACTCTTaGCGATTTTGTTTGTTAACA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGASTNS*RFCLLT
Trigger: TGTTAACAAACAAAATCGGCAAGAGTTTGTCGATGC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATGCATCGACAAACTCTTaGCGATTTTGTTTGTTAACA +
Preference number: 4 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDASTNS*RFCLLT
Trigger: TGTTAACAAACAAAATCGGCAAGAGTTTGTCGATGC...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAGCAAAATCAAACACTaGCAATGCAAACAGAGTAAG +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSKIKH*QCKQSK
Trigger: CTTACTCTGTTTGCATTGCCAGTGTTTGATTTTGCT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTCCATCTATCTCATTaGCTATCTCCACAGGAAACC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFHLSH*LSPQET
Trigger: GGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGGTTGTATAAGTTTGTaGAATAAAAGCCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGGCISL*NKSLAA
Trigger: TGCTGCTAGGCTTTTATTCCACAAACTTATACAACC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGGTTGTATAAGTTTGTaGAATAAAAGCCTAGCAGCA +
Preference number: 4 (lower is better)
Translates to: HSSQCFFLLLATVETEFFGCISL*NKSLAA
Trigger: TGCTGCTAGGCTTTTATTCCACAAACTTATACAACC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTAGTTTCTCCTAACATTTaGCTTGGTCTTCTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLVSPNI*LGLLFC
Trigger: ACAGAACAGAAGACCAAGCCAAATGTTAGGAGAAAC...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp ACATTTGGCTTGGTCTTCTGTTCTGTAAATTGGTGGTaGAATCTAGACAGGTTTCAATCACCATTTGGTTAT +
Preference number: 4 (lower is better)
Translates to: TFGLVFCSVNWW*NLDRFQSPFGY
Trigger: ATAACCAAATGGTGATTGAAACCTGTCTAGATTCAACCACCAATTTACAGAACAGAAGACCAAGCCAAATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACTTTAGAAAGTGCAAGTaGATGATAGTAACCACAAGC +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYFRKCK*MIVTTS
Trigger: GCTTGTGGTTACTATCATTCACTTGCACTTTCTAAA...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGTTAGAGCAGCAGTATaGTCTTCTCCACAACAAATA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIVRAAV*SSPQQI
Trigger: TATTTGTTGTGGAGAAGATCATACTGCTGCTCTAAC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACGCTGTTGGACCCAGTTaGTATAATCATTTCTTATGT +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYAVGPS*YNHFLC
Trigger: ACATAAGAAATGATTATATCAACTGGGTCCAACAGC...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFLDFS*PSCPRS
Trigger: TGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACACCAACTGTCAGGGATaGAAATCCATCTTTAATGAA +
Preference number: 4 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYTNCQG*KSIFNE
Trigger: TTCATTAAAGATGGATTTTCATCCCTGACAGTTGGT...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGTACCTAAACCCAATTaGCCATATTTATTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIVPKPN*PYLFCP
Trigger: GGGACAGAATAAATATGGCCAATTGGGTTTAGGTAC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAGAGTAGTTTTTGCTTaGGCATCAAATACAAATGGA +
Preference number: 4 (lower is better)
Translates to: ALKHCSINNFESYNPVIGRVVFA*ASNTNG
Trigger: TCCATTTGTATTTGATGCCCAAGCAAAAACTACTCT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCACATCAACAGAAAATaGAGTTCTTATCGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIHINRK*SSYRVP
Trigger: AGGAACCCGATAAGAACTCCATTTTCTGTTGATGTG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTTTAGAAAGTGCAAGTaGATGATAGTAACCACAAGC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIFRKCK*MIVTTS
Trigger: GCTTGTGGTTACTATCATTCACTTGCACTTTCTAAA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAAAGTTCTACTATCTTaGGGAATAGTGGAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIKVLLS*GIVEVQ
Trigger: TTGAACCTCCACTATTCCTCAAGATAGTAGAACTTT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGCTGTTGGACCCAGTTaGTATAATCATTTCTTATGT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIAVGPS*YNHFLC
Trigger: ACATAAGAAATGATTATATCAACTGGGTCCAACAGC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR TCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTATGAGCTTCTCCACATaGAACAGCTACAATATTTTG +
Preference number: 4 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCMSFST*NSYNIL
Trigger: CAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCAT...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCCTAAGGACTTCCATTaGATCTCCTACAATATTTTC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIPKDFH*ISYNIF
Trigger: GAAAATATTGTAGGAGATGCAATGGAAGTCCTTAGG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTCTCTTTCACTTCTGTTaGACCAAAGTTTTCAACTGT +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVILFHFC*TKVFNC
Trigger: ACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAG...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGCATCGACAAACTCTTaGCGATTTTGTTTGTTAACA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIASTNS*RFCLLT
Trigger: TGTTAACAAACAAAATCGGCAAGAGTTTGTCGATGC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTCAATTCCCTACAAGATaGTTGACTAATCTACAGTAC +
Preference number: 4 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCQFPTR*LTNLQY
Trigger: GTACTGTAGATTAGTCAACCATCTTGTAGGGAATTG...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CCA 90 bp TTCATACCAAGAATAGGAATGCGATCACTACCTGTCAAAAATAACAGAAACTGTACCAAAAATATTGCTTaGCTAGTCCATAGTCTATCC +
Preference number: 4 (lower is better)
Translates to: FIPRIGMRSLPVKNNRNCTKNIA*LVHSLS
Trigger: GGATAGACTATGGACTAGCCAAGCAATATTTTTGGT...ACAGTTTCTGTTATTTTTGACAGGTAGTGATCGCATTCCTATTCTTGGTATGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000427635.6
3UTR CAA 72 bp AATCACTACTCGAAAAAGTTTGAGAAACCTAGTCATTaGTCCTGTACAACTTTATGCAGACTGGATTTTGCT +
Preference number: 4 (lower is better)
Translates to: NHYSKKFEKPSH*SCTTLCRLDFA
Trigger: AGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGGTTTCTCAAACTTTTTCGAGTAGTGATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR GCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTATTAGCAGGATCCAATaGACCTTCAAATTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIISRIQ*TFKFSN
Trigger: GTTTGAAAATTTGAAGGTGCATTGGATCCTGCTAAT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS-3UTR CCA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGCAACCTGTACAATCTaGATATCTGACAAACTTTTA +
Preference number: 4 (lower is better)
Translates to: IALKHCSINNFESYNPVIATCTI*ISDKLL
Trigger: TAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS TCA 90 bp CTTCAGAGGCCGGCGGCCGAGGCTTGGCAGTGCGCGGCCTCAACCTaGGAGAAGCCCATCCCCAGGCAGATGAGACATTCCAGCCCCGGG +
Preference number: 5 (lower is better)
Translates to: LQRPAAEAWQCAAST*EKPIPRQMRHSSPG
Trigger: CCCGGGGCTGGAATGTCTCATCTGCCTGGGGATGGGCTTCTCTCAGGTTGAGGCCGCGCACTGCCAAGCCTCGGCCGCCGGCCTCTGAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000505760.5
CDS GCA 90 bp AAAATGGAGTTCTTATCGGGTTCCTTAGAGAAAAGCGGACGCCACTaGTGTCCAGTCCAGAGACAGCCGTCAGCGACCCGGATGGAGCGG +
Preference number: 5 (lower is better)
Translates to: KMEFLSGSLEKSGRH*CPVQRQPSATRMER
Trigger: CCGCTCCATCCGGGTCGCTGACGGCTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENST00000373700.9
ENST00000395185.7
ENST00000395198.7
ENST00000412272.6
ENST00000473533.6
ENST00000492996.6
ENST00000513996.5
CDS-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 5 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTCCCAAGTTCAAGCGATaGTCCCACCTCAGCCTCCCA +
Preference number: 5 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFPKFKR*SHLSLP
Trigger: TGGGAGGCTGAGGTGGGACAATCGCTTGAACTTGGG...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATTTTTCCTGTTGCTTGTaGAACCGGTTCCCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYFSCCL*NRFPAA
Trigger: GGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAAA...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 5 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp TGGGCTCCTCCTGCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATC +
Preference number: 5 (lower is better)
Translates to: WAPPAATCMKGIPSKDLSSIGLL*DPVDII
Trigger: GATTATATCAACTGGGTCCAACAGCAGGCCTATGGA...GCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CAA 90 bp TCACCACCTCCTGTGGACTGGATGACTAGTTTCAGACTCTTCATACCAAGAATAGGCTTTTCCTGTTGCTaGTTGAACCGGTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: SPPPVDWMTSFRLFIPRIGFSCC*LNRFPA
Trigger: AGCTGGGAACCGGTTCAACAAGCAACAGGAAAAGCC...TATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCCACAGGAGGTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAATCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 5 (lower is better)
Translates to: QVLSVVPFLGSQELYQRESSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATTTTCCTGTTGCTTGTaGAACCGGTTCCCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKFSCCL*NRFPAA
Trigger: GGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAAA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGGCTTTTCCTGTTGCTaGTTGAACCGGTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEGFSCC*LNRFPA
Trigger: AGCTGGGAACCGGTTCAACAAGCAACAGGAAAAGCC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACAAGAGCTGTACCAAAGGGAAAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 5 (lower is better)
Translates to: QVLSVVPFLGSQELYQRESKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...TTCCCTTTGGTACAGCTCTTGTGAACCTAGAAAAGGCACCACTGAAAGTACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCT +
Preference number: 5 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEICFVG*GHLKSS
Trigger: AGATGACTTCAGATGTCCCAATCCGACAAAGCAGAT...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CTTTTCCAAACTAGCTGCCACCTGCTGAGATATCTGCGGATGATCAGGTTGTATGTTCCATCTATCTCATaGGCTATCTCCACAGGAAAC +
Preference number: 5 (lower is better)
Translates to: LFQTSCHLLRYLRMIRLYVPSIS*AISTGN
Trigger: GTTTCCTGTGGAGATAGCCAATGAGATAGATGGAAC...ATACAACCTGATCATCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATC +
Preference number: 5 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFSIGLL*DPVDII
Trigger: GATTATATCAACTGGGTCCAACAGCAGGCCTATGGA...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAAACAGCTACAATATTTaGGGCATCCAGGGCAACAAC +
Preference number: 5 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQENSYNI*GIQGNN
Trigger: GTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTT...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS TCA 90 bp GCATCCAGGGCAACAACCTGCTCTGGTTTCTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCATTACATCCACATGTGTACACTGTT +
Preference number: 5 (lower is better)
Translates to: ASRATTCSGFFLDFS*PSCPRSLHPHVYTV
Trigger: AACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000513996.5
CDS GCA 90 bp GCTGCAACTTGCATGAAAGGGATTCCAAGCAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTACAGTCAGTACCTAAACCCAATTGG +
Preference number: 5 (lower is better)
Translates to: AATCMKGIPSKDLSS*GEVCFLQSVPKPNW
Trigger: CCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
ENST00000473533.6
ENST00000513996.5
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTTTTCCTGTTGCTTGTaGAACCGGTTCCCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGFSCCL*NRFPAA
Trigger: GGCAGCTGGGAACCGGTTCAACAAGCAACAGGAAAA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCGGCTTTTCCTGTTGCTaGTTGAACCGGTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: PSHLSCTTLCRLDFADFIGFSCC*LNRFPA
Trigger: AGCTGGGAACCGGTTCAACAAGCAACAGGAAAAGCC...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAAGGGGCTTTTCCTGTaGCTTGTTGAACCGGTTCCC +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFKGLFL*LVEPVP
Trigger: GGGAACCGGTTCAACAAGCAACAGGAAAAGCCCCTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TATTTCATGACTGGTAGAATTATGGCCCAACTGACCATACCCTCCAGCTCCAAAGTTCCATCTATCTCATaGGCTATCTCCACAGGAAAC +
Preference number: 5 (lower is better)
Translates to: YFMTGRIMAQLTIPSSSKVPSIS*AISTGN
Trigger: GTTTCCTGTGGAGATAGCCAATGAGATAGATGGAAC...TTTGGAGCTGGAGGGTATGGTCAGTTGGGCCATAATTCTACCAGTCATGAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATCCATAGGCCTGCTGTaGGACCCAGTTGATATAATC +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSIGLL*DPVDII
Trigger: GATTATATCAACTGGGTCCAACAGCAGGCCTATGGA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATC +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESIGLL*DPVDII
Trigger: GATTATATCAACTGGGTCCAACAGCAGGCCTATGGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGCAGAGTAGTTTTTGCTaGGGCATCAAATACAAATGG +
Preference number: 5 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWQSSFC*GIKYKW
Trigger: CCATTTGTATTTGATGCCCAAGCAAAAACTACTCTG...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGCATACACCTGGCCTTaGTCATTTAGCGCTAACGTA +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKAYTWP*SFSANV
Trigger: TACGTTAGCGCTAAATGACAAAGGCCAGGTGTATGC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS GCA 90 bp CTGGGCTCTAGTACAATTTCTTCATCAATTCCACCCAAACCTAGCTaGCCAAAGGATGCATTTCCCCAGCACAACATGCTTGTAATTATT +
Preference number: 5 (lower is better)
Translates to: LGSSTISSSIPPKPS*PKDAFPQHNMLVII
Trigger: AATAATTACAAGCATGTTGTGCTGGGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENST00000373700.9
ENST00000395185.7
ENST00000395198.7
ENST00000412272.6
ENST00000473533.6
ENST00000492996.6
ENST00000505760.5
ENST00000506515.1
ENST00000513996.5
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGSSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCT +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEICFVG*GHLKSS
Trigger: AGATGACTTCAGATGTCCCAATCCGACAAAGCAGAT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCT +
Preference number: 5 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISICFVG*GHLKSS
Trigger: AGATGACTTCAGATGTCCCAATCCGACAAAGCAGAT...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGTTCCATCTATCTCATaGGCTATCTCCACAGGAAAC +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEVPSIS*AISTGN
Trigger: GTTTCCTGTGGAGATAGCCAATGAGATAGATGGAAC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TTAAAACAAGTATGGGAAACTGGGAGATACTCCTCACCACCTCCTGTGGACTGGAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCA +
Preference number: 5 (lower is better)
Translates to: LKQVWETGRYSSPPPVDWKSSTI*RNSGGS
Trigger: TGAACCTCCACTATTCCTCAAGATAGTAGAACTTTT...CCAGTCCACAGGAGGTGGTGAGGAGTATCTCCCAGTTTCCCATACTTGTTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAAGCAAGAAAAATTCTTaGCGCACCCCTCCTGCATCC +
Preference number: 5 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPSKKNS*RTPPAS
Trigger: GGATGCAGGAGGGGTGCGCAAAGAATTTTTCTTGCT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS TCA 90 bp CCTGGGAAACAAGAGCGAAACTCTGGTTTCTTTCTGGATTTTTCATaGCCTAGCTGTCCTAGATCATTACATCCACATGTGTACACTGTT +
Preference number: 5 (lower is better)
Translates to: PGKQERNSGFFLDFS*PSCPRSLHPHVYTV
Trigger: AACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGAGTTTCGCTCTTGTTTCCCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000492996.6
CDS-3UTR CAA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACTCCTCCTGCTGCAACTaGCATGAAAGGGATTCCAAG +
Preference number: 5 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYSSCCN*HERDSK
Trigger: CTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGA...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGCTTTTCCTGTTGCTaGTTGAACCGGTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIGFSCC*LNRFPA
Trigger: AGCTGGGAACCGGTTCAACAAGCAACAGGAAAAGCC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 5 (lower is better)
Translates to: SGGSSTDHQFSSTFSGAFIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCA +
Preference number: 5 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEKSSTI*RNSGGS
Trigger: TGAACCTCCACTATTCCTCAAGATAGTAGAACTTTT...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATC +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFSIGLL*DPVDII
Trigger: GATTATATCAACTGGGTCCAACAGCAGGCCTATGGA...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCTTGCCGATTTTGTTaGTTAACAGCTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESCRFC*LTAVSA
Trigger: TGCAGACACAGCTGTTAACAAACAAAATCGGCAAGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATCTTGAGGAATAGTGGAGGTTCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTACCTCTGTCACCTaGCTGAATTCATCACCACAA +
Preference number: 5 (lower is better)
Translates to: ILRNSGGSSTDHQFSSTFSTSVT*LNSSPQ
Trigger: TTGTGGTGATGAATTCAGCAAGGTGACAGAGGTACT...GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGCAACCAGAGGAAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAATGAACACTCGTAGATaGAACATTCTGCAAGTAAGA +
Preference number: 5 (lower is better)
Translates to: GNQRKKTFHLSHWLSPQEMNTRR*NILQVR
Trigger: TCTTACTTGCAGAATGTTCAATCTACGAGTGTTCAT...TTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTTCCTCTGGTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTGCATACACCTGGCCTTaGTCATTTAGCGCTAACGTA +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGAYTWP*SFSANV
Trigger: TACGTTAGCGCTAAATGACAAAGGCCAGGTGTATGC...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS CCA 90 bp AGCTGCGGTGAAGTTTGCTTTTTACAGTCAGTACCTAAACCCAATTaGCCATATTTATTCTGTCCCCAACAGAAGACTTCACTTGCTTTA +
Preference number: 5 (lower is better)
Translates to: SCGEVCFLQSVPKPN*PYLFCPQQKTSLAL
Trigger: TAAAGCAAGTGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
ENST00000473533.6
ENST00000513996.5
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TCAAGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 5 (lower is better)
Translates to: SSTDHQFSSTFSGAFSRFIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...GAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGCAGAGTAGTTTTTGCTaGGGCATCAAATACAAATGG +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEQSSFC*GIKYKW
Trigger: CCATTTGTATTTGATGCCCAAGCAAAAACTACTCTG...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATCTGCCAACATTCCATAGGCCTGCTGTTGGACCCAGTTGATATAATCATTTCTAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: ICQHSIGLLLDPVDIIISKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...AGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAACAGCTACAATATTTaGGGCATCCAGGGCAACAAC +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFNSYNI*GIQGNN
Trigger: GTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACGCATACACCTGGCCTTaGTCATTTAGCGCTAACGTA +
Preference number: 5 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYAYTWP*SFSANV
Trigger: TACGTTAGCGCTAAATGACAAAGGCCAGGTGTATGC...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp AGTACTGACCACCAGTTTTCAAGTACTTTCAGTGGTGCCTTTTCTAGGTTCACACTCCTAACATTTGGCTaGGTCTTCTGTTCTGTAAAT +
Preference number: 5 (lower is better)
Translates to: STDHQFSSTFSGAFSRFTLLTFG*VFCSVN
Trigger: ATTTACAGAACAGAAGACCAAGCCAAATGTTAGGAG...TGTGAACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS TCA 90 bp AGTAAATTAGGAACATACCTATCATTTTCATCATTAAGACCTAGCTaGCCAAACTTGTTGCGTCCCCATCCAAAGATAGCTCCAGAAAGG +
Preference number: 5 (lower is better)
Translates to: SKLGTYLSFSSLRPS*PNLLRPHPKIAPER
Trigger: CCTTTCTGGAGCTATCTTTGGATGGGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
CDS TCA 90 bp AAGCTTGTTTTCACCTCAGGTATTTTACCAAATGTTCGTTGTTCTTaGAATTCTCTCTGCCCTGATCTTAAAGGGCTGCTCCTTGTCATT +
Preference number: 5 (lower is better)
Translates to: KLVFTSGILPNVRCS*NSLCPDLKGLLLVI
Trigger: AATGACAAGGAGCAGCCCTTTAAGATCAGGGCAGAGAGAATTTCAAGAACAACGAACATTTGGTAAAATACCTGAGGTGAAAACAAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS GCA 90 bp ATGAAAGGGATTCCAAGCAAAGACTTAAGCAGCTGCGGTGAAGTTTaGTTTTTACAGTCAGTACCTAAACCCAATTGGCCATATTTATTC +
Preference number: 5 (lower is better)
Translates to: MKGIPSKDLSSCGEV*FLQSVPKPNWPYLF
Trigger: GAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
ENST00000473533.6
ENST00000513996.5
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETESGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAATCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKSGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp AAGAAAACGTTCCATCTATCTCATTGGCTATCTCCACAGGAAACCTTCCAGAAGTCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: KKTFHLSHWLSPQETFQKSGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...CTTCTGGAAGGTTTCCTGTGGAGATAGCCAATGAGATAGATGGAACGTTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AGTTCTCTGATCGACAATCCCCCATCTATCAGTGTGTCAGGATTCACAAAGAAAAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCA +
Preference number: 5 (lower is better)
Translates to: SSLIDNPPSISVSGFTKKKSSTI*RNSGGS
Trigger: TGAACCTCCACTATTCCTCAAGATAGTAGAACTTTT...TTTCTTTGTGAATCCTGACACACTGATAGATGGGGGATTGTCGATCAGAGAACT
40% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTCTTGCCGATTTTGTTaGTTAACAGCTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGSCRFC*LTAVSA
Trigger: TGCAGACACAGCTGTTAACAAACAAAATCGGCAAGA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CCTAGTCATTTGTCCTGTACAACTTTATGCAGACTGGATTTTGCTGACTTTATCTCTTGCCGATTTTGTTaGTTAACAGCTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: PSHLSCTTLCRLDFADFISCRFC*LTAVSA
Trigger: TGCAGACACAGCTGTTAACAAACAAAATCGGCAAGA...GATAAAGTCAGCAAAATCCAGTCTGCATAAAGTTGTACAGGACAAATGACTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp GGTGCTCATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGATGAACACTCGTAGATaGAACATTCTGCAAGTAAGA +
Preference number: 5 (lower is better)
Translates to: GAHSSQCFFLLLATVETEMNTRR*NILQVR
Trigger: TCTTACTTGCAGAATGTTCAATCTACGAGTGTTCAT...CTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTATCTGCTTTGTCGGATaGGGACATCTGAAGTCATCT +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIICFVG*GHLKSS
Trigger: AGATGACTTCAGATGTCCCAATCCGACAAAGCAGAT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGTTCCATCTATCTCATaGGCTATCTCCACAGGAAAC +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIVPSIS*AISTGN
Trigger: GTTTCCTGTGGAGATAGCCAATGAGATAGATGGAAC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCCAGAGTAGTTTTTGCTaGGGCATCAAATACAAATGG +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFQSSFC*GIKYKW
Trigger: CCATTTGTATTTGATGCCCAAGCAAAAACTACTCTG...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATCAGAGTAGTTTTTGCTaGGGCATCAAATACAAATGG +
Preference number: 5 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDQSSFC*GIKYKW
Trigger: CCATTTGTATTTGATGCCCAAGCAAAAACTACTCTG...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp AATTCTTCTTTCAGAAGGGGGAATACCGATCTTGTAGAGTTTCAAAAGATGTACTCTTGCCGATTTTGTTaGTTAACAGCTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: NSSFRRGNTDLVEFQKMYSCRFC*LTAVSA
Trigger: TGCAGACACAGCTGTTAACAAACAAAATCGGCAAGA...GTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp CATAGTAGCCAATGTTTCTTTTTATTACTGGCAACTGTGGAGACAGAGTTCTTCAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: HSSQCFFLLLATVETEFFKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...GAAGAACTCTGTCTCCACAGTTGCCAGTAATAAAAAGAAACATTGGCTACTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATGTTCTGCCCAATATTCCCCTTTGTATTCTGTATTCTTTTCCAGTTCCTTCCAAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: MFCPIFPFVFCILFQFLPKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...TGGAAGGAACTGGAAAAGAATACAGAATACAAAGGGGAATATTGGGCAGAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAACAGCTACAATATTTaGGGCATCCAGGGCAACAAC +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVINSYNI*GIQGNN
Trigger: GTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTTCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGSGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp TCTCCTACAATATTTTCTCTACGCACCACTAGAATTAAGCAGGGATTCACAGATTCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: SPTIFSLRTTRIKQGFTDSGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...ATCTGTGAATCCCTGCTTAATTCTAGTGGTGCGTAGAGAAAATATTGTAGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000427635.6
ENST00000473533.6
CDS-3UTR CAA 90 bp GCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGGTAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCA +
Preference number: 5 (lower is better)
Translates to: ALKHCSINNFESYNPVIGKSSTI*RNSGGS
Trigger: TGAACCTCCACTATTCCTCAAGATAGTAGAACTTTT...ACCAATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTGCTCTTTCACTTCTGTaGCACCAAAGTTTTCAACTG +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIALSLL*HQSFQL
Trigger: CAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGC...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTCTTGCCGATTTTGTTaGTTAACAGCTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVISCRFC*LTAVSA
Trigger: TGCAGACACAGCTGTTAACAAACAAAATCGGCAAGA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTATTCCCTACAAGATGGTaGACTAATCTACAGTACATG +
Preference number: 5 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLFPTRW*TNLQYM
Trigger: CATGTACTGTAGATTAGTCAACCATCTTGTAGGGAA...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp ACCAGCTCTTTCACTTCTGTTGCACCAAAGTTTTCAACTGTGATCGTAAAATTAAATACATACAGCTCTTaGTTGGCAGCTATTTGTCAG +
Preference number: 5 (lower is better)
Translates to: TSSFTSVAPKFSTVIVKLNTYSS*LAAICQ
Trigger: CTGACAAATAGCTGCCAACAAAGAGCTGTATGTATT...TAATTTTACGATCACAGTTGAAAACTTTGGTGCAACAGAAGTGAAAGAGCTGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000427635.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTATTGTTGTGAAATTGTaGGAATCACTCATCAGGGGA +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIIVVKL*ESLIRG
Trigger: TCCCCTGATGAGTGATTCCAACAATTTCACAACAAT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAAACTCTTGCCGATTTaGTTTGTTAACAGCTGTGTC +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIKLLPI*FVNSCV
Trigger: GACACAGCTGTTAACAAACAAAATCGGCAAGAGTTT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS TCA 90 bp CAATTTAAACGACTCTCCCAATTACTCTTTAGCCCAGAGAGAAAATaGAGATTCTCTTACCAAACCATAATCTTAAATCACCTCCAAAGA +
Preference number: 5 (lower is better)
Translates to: QFKRLSQLLFSPERK*RFSYQTIILNHLQR
Trigger: TCTTTGGAGGTGATTTAAGATTATGGTTTGGTAAGAGAATCTTCATTTTCTCTCTGGGCTAAAGAGTAATTGGGAGAGTCGTTTAAATTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000515753.1
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTTCAGGTTGTATAAGTTaGTGGAATAAAAGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVISGCIS*WNKSLA
Trigger: TGCTAGGCTTTTATTCCACAAACTTATACAACCTGA...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS-3UTR CAA 90 bp ATAGCTCTAAAGCACTGCAGCATCAATAATTTTGAAAGCTATAACCCAGTGATTAAAAGTTCTACTATCTaGAGGAATAGTGGAGGTTCA +
Preference number: 5 (lower is better)
Translates to: IALKHCSINNFESYNPVIKSSTI*RNSGGS
Trigger: TGAACCTCCACTATTCCTCAAGATAGTAGAACTTTT...AATCACTGGGTTATAGCTTTCAAAATTATTGATGCTGCAGTGCTTTAGAGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
CDS CAA 90 bp CGCAACCGGCCGCTCGCAACAGCTTCAGAGGCCGGCGGCCGAGGCTaGGCAGTGCGCGGCCTCAACCTGAGAGAAGCCCATCCCCAGGCA +
Preference number: 6 (lower is better)
Translates to: RNRPLATASEAGGRG*AVRGLNLREAHPQA
Trigger: TGCCTGGGGATGGGCTTCTCTCAGGTTGAGGCCGCGCACTGCCAAGCCTCGGCCGCCGGCCTCTGAAGCTGTTGCGAGCGGCCGGTTGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505760.5
CDS TCA 72 bp CCGGCGGCCGAGGCTTGGCAGTGCGCGGCCTCAACCTaGGAGAAGCCCATCCCCAGGCAGATGAGACATTCC +
Preference number: 6 (lower is better)
Translates to: PAAEAWQCAAST*EKPIPRQMRHS
Trigger: GGAATGTCTCATCTGCCTGGGGATGGGCTTCTCTCAGGTTGAGGCCGCGCACTGCCAAGCCTCGGCCGCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505760.5
CDS TCA 72 bp ACTAGACATATTCTAGACACTGTCAGAGGTGCTGGTTaGCTGACAAGAGCACCCATCCACAAGGAGCTTACA +
Preference number: 6 (lower is better)
Translates to: TRHILDTVRGAG*LTRAPIHKELT
Trigger: TGTAAGCTCCTTGTGGATGGGTGCTCTTGTCAGTCAACCAGCACCTCTGACAGTGTCTAGAATATGTCTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS GCA 72 bp CTGATTCCGGAAGGTGGGAGTATCCTAAAAACAGCGTaGACTAACCAGATTGCCATTCAAAAACTACTGTAC +
Preference number: 6 (lower is better)
Translates to: LIPEGGSILKTA*TNQIAIQKLLY
Trigger: GTACAGTAGTTTTTGAATGGCAATCTGGTTAGTGCACGCTGTTTTTAGGATACTCCCACCTTCCGGAATCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS TCA 72 bp GCATACACCTGGCCTTTGTCATTTAGCGCTAACGTATaGGCTTCTCCACATGAAACAGCTACAATATTTTGG +
Preference number: 6 (lower is better)
Translates to: AYTWPLSFSANV*ASPHETATIFW
Trigger: CCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAATGACAAAGGCCAGGTGTATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000513996.5
CDS GCA 72 bp TGCATGAAAGGGATTCCAAGCAAAGACTTAAGCAGCTaGGGTGAAGTTTGCTTTTTACAGTCAGTACCTAAA +
Preference number: 6 (lower is better)
Translates to: CMKGIPSKDLSS*GEVCFLQSVPK
Trigger: TTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
ENST00000473533.6
ENST00000513996.5
CDS GCA 72 bp GTTCTTGAAATTCTCTCTGCCCTGATCTTAAAGGGCTaGTCCTTGTCATTCAGATTAGTACTCATACTTCAT +
Preference number: 6 (lower is better)
Translates to: VLEILSALILKG*SLSFRLVLILH
Trigger: ATGAAGTATGAGTACTAATCTGAATGACAAGGAGCAGCCCTTTAAGATCAGGGCAGAGAGAATTTCAAGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS CAA 72 bp CATGATTTTCGGGAAGCAGCTTCAGCAAATCAAAGTTaGAGCAGGAAAAAGGAGAGTTACTCTGATTCCATA +
Preference number: 6 (lower is better)
Translates to: HDFREAASANQS*SRKKESYSDSI
Trigger: TATGGAATCAGAGTAACTCTCCTTTTTCCTGCTCAAACTTTGATTTGCTGAAGCTGCTTCCCGAAAATCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277817.10
CDS CCA 72 bp GAAGTTTGCTTTTTACAGTCAGTACCTAAACCCAATTaGCCATATTTATTCTGTCCCCAACAGAAGACTTCA +
Preference number: 6 (lower is better)
Translates to: EVCFLQSVPKPN*PYLFCPQQKTS
Trigger: TGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENST00000277817.10
ENST00000373700.9
ENST00000395198.7
ENST00000412272.6
ENST00000427635.6
ENST00000463478.1
ENST00000473533.6
ENST00000513996.5
CDS CAA 72 bp ATTGCACAGAAAACCTACCATTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATCATTTCTTATGTCTAT +
Preference number: 6 (lower is better)
Translates to: IAQKTYHSIGLL*DPVDIIISYVY
Trigger: ATAGACATAAGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGGTAGGTTTTCTGTGCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS CAA 72 bp ATTTTGAAAGGAACCATGAGTTATTGTGTAATGCTCTaGAAATTCCTCAGATGTAGGGTCCTGGTTTCTTTC +
Preference number: 6 (lower is better)
Translates to: ILKGTMSYCVML*KFLRCRVLVSF
Trigger: GAAAGAAACCAGGACCCTACATCTGAGGAATTTCAAGAGCATTACACAATAACTCATGGTTCCTTTCAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395185.7
CDS CAA 72 bp CATGCAGCAGTCTTCTTTATAGCTACCCAAAGTACTTaGTGTACCTTCATTACTGATCCTAGGAAAATTTCA +
Preference number: 6 (lower is better)
Translates to: HAAVFFIATQST*CTFITDPRKIS
Trigger: TGAAATTTTCCTAGGATCAGTAATGAAGGTACACAAAGTACTTTGGGTAGCTATAAAGAAGACTGCTGCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000480158.1
CDS CAA 90 bp TCCCCTAAGATGAGGATAATTCTTGCAAATTGTGTCACAAGCATTTaGAAAGGAACCATGAGTTATTGTGTAATGCTCTTGAAATTCCTC +
Preference number: 6 (lower is better)
Translates to: SPKMRIILANCVTSI*KGTMSYCVMLLKFL
Trigger: GAGGAATTTCAAGAGCATTACACAATAACTCATGGTTCCTTTCAAAATGCTTGTGACACAATTTGCAAGAATTATCCTCATCTTAGGGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395185.7
CDS CAA 90 bp AAATCACAAATTGCACAGAAAACCTACCATTCCATAGGCCTGCTGTaGGACCCAGTTGATATAATCATTTCTTATGTCTATCAATTCTTG +
Preference number: 6 (lower is better)
Translates to: KSQIAQKTYHSIGLL*DPVDIIISYVYQFL
Trigger: CAAGAATTGATAGACATAAGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGGTAGGTTTTCTGTGCAATTTGTGATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460168.1
CDS CAA 90 bp GAGATAATGGTGACCAACCCCAGGAACATGTTTAATACCTTATTATaGAAACTTTCTTCAAGGAAATTTCACATCTTCTTCCTAACGAGA +
Preference number: 6 (lower is better)
Translates to: EIMVTNPRNMFNTLL*KLSSRKFHIFFLTR
Trigger: TCTCGTTAGGAAGAAGATGTGAAATTTCCTTGAAGAAAGTTTCAATAATAAGGTATTAAACATGTTCCTGGGGTTGGTCACCATTATCTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000480158.1
CDS CAA 72 bp ATGAGGATAATTCTTGCAAATTGTGTCACAAGCATTTaGAAAGGAACCATGAGTTATTGTGTAATGCTCTTG +
Preference number: 6 (lower is better)
Translates to: MRIILANCVTSI*KGTMSYCVMLL
Trigger: CAAGAGCATTACACAATAACTCATGGTTCCTTTCAAAATGCTTGTGACACAATTTGCAAGAATTATCCTCAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395185.7