Pregenerated sensors for HDAC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000116478Ensembl transcript IDs: ENST00000463172.5, ENST00000471488.1, ENST00000476391.5, ENST00000482310.5, ENST00000484305.1, ENST00000490081.5
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGGGGATGGGACGTGCCAAGGGCGCTAGCTCCCAGCTTACCGGGCTaGCTGCCTCCCTCAGGTATCTCTAAGCACCAGAGACGTGGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: WGWDVPRALAPSLPG*LPPSGISKHQRRGN Trigger: GTTTCCACGTCTCTGGTGCTTAGAGATACCTGAGGGAGGCAGCCAGCCCGGTAAGCTGGGAGCTAGCGCCCTTGGCACGTCCCATCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490081.5 |
||
| CDS TCA 90 bp | CTGGCTGAAGGAAGGTGGAAGAGCGGCCGGGTGTCTCCAGAGGCCTaGCCAAGCCGACCAAGTCCGATCTTCCTACTCTACAGCCAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: LAEGRWKSGRVSPEA*PSRPSPIFLLYSQG Trigger: ACCCTGGCTGTAGAGTAGGAAGATCGGACTTGGTCGGCTTGGTCAGGCCTCTGGAGACACCCGGCCGCTCTTCCACCTTCCTTCAGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000463172.5 ENST00000482310.5 ENST00000490081.5 |
||
| CDS TCA 90 bp | TGCCTCCCTCAGGTATCTCTAAGCACCAGAGACGTGGAAACTGGCTaGAGGAAGGTGGAAGAGCGGCCGGGTGTCTCCAGAGGCCTGACC | + |
|
Preference number: 5 (lower is better) Translates to: CLPQVSLSTRDVETG*RKVEERPGVSRGLT Trigger: GGTCAGGCCTCTGGAGACACCCGGCCGCTCTTCCACCTTCCTTCAGCCAGTTTCCACGTCTCTGGTGCTTAGAGATACCTGAGGGAGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000482310.5 ENST00000490081.5 |
||
| CDS CCA 90 bp | TGGCTGCCTCCCTCAGGTATCTCTAAGCACCAGAGACGTGGAAACTaGCTGAAGGAAGGTGGAAGAGCGGCCGGGTGTCTCCAGAGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: WLPPSGISKHQRRGN*LKEGGRAAGCLQRP Trigger: AGGCCTCTGGAGACACCCGGCCGCTCTTCCACCTTCCTTCAGCCAGTTTCCACGTCTCTGGTGCTTAGAGATACCTGAGGGAGGCAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000482310.5 ENST00000490081.5 |
||
| CDS TCA 90 bp | CCAGGGTCAACTCCAGCCACACAGGGACACTCTGGAGGCAGGATCTaGGCAGCATCTGCCCCTGATCATGCCGTGGCTCAGATCAAACCA | + |
|
Preference number: 5 (lower is better) Translates to: PGSTPATQGHSGGRI*AASAPDHAVAQIKP Trigger: TGGTTTGATCTGAGCCACGGCATGATCAGGGGCAGATGCTGCTCAGATCCTGCCTCCAGAGTGTCCCTGTGTGGCTGGAGTTGACCCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000463172.5 ENST00000490081.5 |
||
| CDS GCA 90 bp | GCATGGGTGAGAGGGCAGGCGGGTGCTGATTTAGCTCAGCATCTATaGCCAGTGCTTCCCTGCGTGTCCTCCAAGAGACACCAAGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: AWVRGQAGADLAQHL*PVLPCVSSKRHQGK Trigger: TTTCCCTTGGTGTCTCTTGGAGGACACGCAGGGAAGCACTGGGCATAGATGCTGAGCTAAATCAGCACCCGCCTGCCCTCTCACCCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS TCA 90 bp | CACACAGGGACACTCTGGAGGCAGGATCTGAGCAGCATCTGCCCCTaGTCATGCCGTGGCTCAGATCAAACCAAGACCCCATCAAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: HTGTLWRQDLSSICP*SCRGSDQTKTPSRR Trigger: TCTCCTTGATGGGGTCTTGGTTTGATCTGAGCCACGGCATGATCAGGGGCAGATGCTGCTCAGATCCTGCCTCCAGAGTGTCCCTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000463172.5 ENST00000490081.5 |
||
| CDS GCA 90 bp | CAGGCGGGTGCTGATTTAGCTCAGCATCTATGCCCAGTGCTTCCCTaGGTGTCCTCCAAGAGACACCAAGGGAAAGGGAACCAGAAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QAGADLAQHLCPVLP*VSSKRHQGKGNQKR Trigger: CCTCTTCTGGTTCCCTTTCCCTTGGTGTCTCTTGGAGGACACGCAGGGAAGCACTGGGCATAGATGCTGAGCTAAATCAGCACCCGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 90 bp | GCAATTCGTTTGTCAGAGGAGCAGACTGGGAGGGAGTGGGAAGCATaGGTGAGAGGGCAGGCGGGTGCTGATTTAGCTCAGCATCTATGC | + |
|
Preference number: 5 (lower is better) Translates to: AIRLSEEQTGREWEA*VRGQAGADLAQHLC Trigger: GCATAGATGCTGAGCTAAATCAGCACCCGCCTGCCCTCTCACCCATGCTTCCCACTCCCTCCCAGTCTGCTCCTCTGACAAACGAATTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS TCA 90 bp | GCTACCCTCCTGCCAGCCCAGGCAGTAGTTTGTCTCTCATTCCTCTaGTCATCCCTCAAAAACACAGGCACTAGGCCAGCCTACCCATGG | + |
|
Preference number: 5 (lower is better) Translates to: ATLLPAQAVVCLSFL*SSLKNTGTRPAYPW Trigger: CCATGGGTAGGCTGGCCTAGTGCCTGTGTTTTTGAGGGATGATCAGAGGAATGAGAGACAAACTACTGCCTGGGCTGGCAGGAGGGTAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 90 bp | GCTTGGAGGGAGTGTGCAGCCAGGAATGGTGGTGGAAGTGTGAGCTaGCTATTGAATGGAAGGCATAGGGCTCTAGGTCTGGGTCTCACT | + |
|
Preference number: 5 (lower is better) Translates to: AWRECAARNGGGSVS*LLNGRHRALGLGLT Trigger: AGTGAGACCCAGACCTAGAGCCCTATGCCTTCCATTCAATAGGCAGCTCACACTTCCACCACCATTCCTGGCTGCACACTCCCTCCAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 90 bp | ACTCTGGAGGCAGGATCTGAGCAGCATCTGCCCCTGATCATGCCGTaGCTCAGATCAAACCAAGACCCCATCAAGGAGATGATGGCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: TLEAGSEQHLPLIMP*LRSNQDPIKEMMAR Trigger: TCTGGCCATCATCTCCTTGATGGGGTCTTGGTTTGATCTGAGCCACGGCATGATCAGGGGCAGATGCTGCTCAGATCCTGCCTCCAGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000463172.5 ENST00000490081.5 |
||
| CDS CCA 90 bp | CAGGCACTGGAACTCGAAAACAGATTTCTCTACAGGTGGGGAGCTTaGAGGGAGTGTGCAGCCAGGAATGGTGGTGGAAGTGTGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QALELENRFLYRWGA*RECAARNGGGSVSC Trigger: GCAGCTCACACTTCCACCACCATTCCTGGCTGCACACTCCCTCCAAGCTCCCCACCTGTAGAGAAATCTGTTTTCGAGTTCCAGTGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 90 bp | AGAAGAGGGAGGAACTCGGGCTCCCTAACCTGTTCCTACAGGCACTaGAACTCGAAAACAGATTTCTCTACAGGTGGGGAGCTTGGAGGG | + |
|
Preference number: 5 (lower is better) Translates to: RRGRNSGSLTCSYRH*NSKTDFSTGGELGG Trigger: CCCTCCAAGCTCCCCACCTGTAGAGAAATCTGTTTTCGAGTTCCAGTGCCTGTAGGAACAGGTTAGGGAGCCCGAGTTCCTCCCTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 90 bp | GCCTACCCATGGAACATGCCACACAGCCTTTCCAGAATCTCTGGATaGGCTGACTGGCAAAGGGCTTTCCCAGACAAAGCCAGTCTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: AYPWNMPHSLSRISG*ADWQRAFPDKASLQ Trigger: TTGCAGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAGCCCATCCAGAGATTCTGGAAAGGCTGTGTGGCATGTTCCATGGGTAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS TCA 90 bp | CCCATGGAACATGCCACACAGCCTTTCCAGAATCTCTGGATGGGCTaGCTGGCAAAGGGCTTTCCCAGACAAAGCCAGTCTGCAAAGACT | + |
|
Preference number: 5 (lower is better) Translates to: PMEHATQPFQNLWMG*LAKGFPRQSQSAKT Trigger: AGTCTTTGCAGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAGCCCATCCAGAGATTCTGGAAAGGCTGTGTGGCATGTTCCATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 90 bp | CATCCCTCAAAAACACAGGCACTAGGCCAGCCTACCCATGGAACATaGCACACAGCCTTTCCAGAATCTCTGGATGGGCTGACTGGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: HPSKTQALGQPTHGT*HTAFPESLDGLTGK Trigger: TTTGCCAGTCAGCCCATCCAGAGATTCTGGAAAGGCTGTGTGGCATGTTCCATGGGTAGGCTGGCCTAGTGCCTGTGTTTTTGAGGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 90 bp | CACTGGCACCTCTGCACTTCTGCTAGTGCCATTCCTTCTACTAAATaGCACCCTTACTGCCATCACCTCCTTCTTCACATGGGCACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: HWHLCTSASAIPSTK*HPYCHHLLLHMGTS Trigger: GGAGGTGCCCATGTGAAGAAGGAGGTGATGGCAGTAAGGGTGGCATTTAGTAGAAGGAATGGCACTAGCAGAAGTGCAGAGGTGCCAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 90 bp | CTCCCATACACCACACTGGCCTACATGCTGCCACACTGGCACCTCTaGACTTCTGCTAGTGCCATTCCTTCTACTAAATGCCACCCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: LPYTTLAYMLPHWHL*TSASAIPSTKCHPY Trigger: GTAAGGGTGGCATTTAGTAGAAGGAATGGCACTAGCAGAAGTGCAGAGGTGCCAGTGTGGCAGCATGTAGGCCAGTGTGGTGTATGGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 90 bp | TGGAACATGCCACACAGCCTTTCCAGAATCTCTGGATGGGCTGACTaGCAAAGGGCTTTCCCAGACAAAGCCAGTCTGCAAAGACTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: WNMPHSLSRISGWAD*QRAFPDKASLQRLE Trigger: CTCCAGTCTTTGCAGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAGCCCATCCAGAGATTCTGGAAAGGCTGTGTGGCATGTTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 90 bp | ACCACCAACCTCAAGAAAGCAATACGAGGTTTGGAGTGGAAAGGCTaGGTGCAACACTTTCCCACCCACTCCTACCTTTCCACTCTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: TTNLKKAIRGLEWKG*VQHFPTHSYLSTLP Trigger: AGGGAGAGTGGAAAGGTAGGAGTGGGTGGGAAAGTGTTGCACCCAGCCTTTCCACTCCAAACCTCGTATTGCTTTCTTGAGGTTGGTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000476391.5 ENST00000484305.1 |
||
| CDS GCA 90 bp | CTGGATGGGCTGACTGGCAAAGGGCTTTCCCAGACAAAGCCAGTCTaGAAAGACTGGAGTAAGTCCCTACTTCTTCTAATGTGCAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: LDGLTGKGLSQTKPV*KDWSKSLLLLMCRH Trigger: ATGTCTGCACATTAGAAGAAGTAGGGACTTACTCCAGTCTTTGCAGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAGCCCATCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 72 bp | GACGTGCCAAGGGCGCTAGCTCCCAGCTTACCGGGCTaGCTGCCTCCCTCAGGTATCTCTAAGCACCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: DVPRALAPSLPG*LPPSGISKHQR Trigger: TCTCTGGTGCTTAGAGATACCTGAGGGAGGCAGCCAGCCCGGTAAGCTGGGAGCTAGCGCCCTTGGCACGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490081.5 |
||
| CDS TCA 72 bp | GGAAGGTGGAAGAGCGGCCGGGTGTCTCCAGAGGCCTaGCCAAGCCGACCAAGTCCGATCTTCCTACTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: GRWKSGRVSPEA*PSRPSPIFLLY Trigger: GTAGAGTAGGAAGATCGGACTTGGTCGGCTTGGTCAGGCCTCTGGAGACACCCGGCCGCTCTTCCACCTTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000463172.5 ENST00000482310.5 ENST00000490081.5 |
||
| CDS GCA 72 bp | CAGCACTCCTCCCATACACCACACTGGCCTACATGCTaGCACACTGGCACCTCTGCACTTCTGCTAGTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: QHSSHTPHWPTC*HTGTSALLLVP Trigger: TGGCACTAGCAGAAGTGCAGAGGTGCCAGTGTGGCAGCATGTAGGCCAGTGTGGTGTATGGGAGGAGTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 72 bp | CCCTCAGGTATCTCTAAGCACCAGAGACGTGGAAACTaGCTGAAGGAAGGTGGAAGAGCGGCCGGGTGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: PSGISKHQRRGN*LKEGGRAAGCL Trigger: GAGACACCCGGCCGCTCTTCCACCTTCCTTCAGCCAGTTTCCACGTCTCTGGTGCTTAGAGATACCTGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000463172.5 ENST00000482310.5 ENST00000490081.5 |
||
| CDS TCA 72 bp | CAGGTATCTCTAAGCACCAGAGACGTGGAAACTGGCTaGAGGAAGGTGGAAGAGCGGCCGGGTGTCTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: QVSLSTRDVETG*RKVEERPGVSR Trigger: TCTGGAGACACCCGGCCGCTCTTCCACCTTCCTTCAGCCAGTTTCCACGTCTCTGGTGCTTAGAGATACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000463172.5 ENST00000482310.5 ENST00000490081.5 |
||
| CDS GCA 72 bp | CCCAGGGGAAGAGGGAAATGGGAACCTGGCCTAAGGTaGTCTTCCAAGAGACAAGGCCAGGCAGGCATACTT | + |
|
Preference number: 6 (lower is better) Translates to: PRGRGKWEPGLR*SSKRQGQAGIL Trigger: AAGTATGCCTGCCTGGCCTTGTCTCTTGGAAGAGCACCTTAGGCCAGGTTCCCATTTCCCTCTTCCCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463172.5 |
||
| CDS TCA 72 bp | CGTGGCTCAGATCAAACCAAGACCCCATCAAGGAGATaGTGGCCAGAGACACTCACCGAGCACATCCTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: RGSDQTKTPSRR*WPETLTEHILA Trigger: GGCTAGGATGTGCTCGGTGAGTGTCTCTGGCCATCATCTCCTTGATGGGGTCTTGGTTTGATCTGAGCCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000463172.5 |
||
| CDS CCA 72 bp | GCAGGATCTGAGCAGCATCTGCCCCTGATCATGCCGTaGCTCAGATCAAACCAAGACCCCATCAAGGAGATG | + |
|
Preference number: 6 (lower is better) Translates to: AGSEQHLPLIMP*LRSNQDPIKEM Trigger: CATCTCCTTGATGGGGTCTTGGTTTGATCTGAGCCACGGCATGATCAGGGGCAGATGCTGCTCAGATCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000463172.5 ENST00000490081.5 |
||
| CDS CAA 72 bp | GCAGCCAGGAATGGTGGTGGAAGTGTGAGCTGCCTATaGAATGGAAGGCATAGGGCTCTAGGTCTGGGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: AARNGGGSVSCL*NGRHRALGLGL Trigger: GAGACCCAGACCTAGAGCCCTATGCCTTCCATTCAATAGGCAGCTCACACTTCCACCACCATTCCTGGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS TCA 72 bp | CATGCCACACAGCCTTTCCAGAATCTCTGGATGGGCTaGCTGGCAAAGGGCTTTCCCAGACAAAGCCAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: HATQPFQNLWMG*LAKGFPRQSQS Trigger: AGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAGCCCATCCAGAGATTCTGGAAAGGCTGTGTGGCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 72 bp | GAGTGTGCAGCCAGGAATGGTGGTGGAAGTGTGAGCTaGCTATTGAATGGAAGGCATAGGGCTCTAGGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: ECAARNGGGSVS*LLNGRHRALGL Trigger: CAGACCTAGAGCCCTATGCCTTCCATTCAATAGGCAGCTCACACTTCCACCACCATTCCTGGCTGCACACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS GCA 72 bp | ACCACACTGGCCTACATGCTGCCACACTGGCACCTCTaGACTTCTGCTAGTGCCATTCCTTCTACTAAATGC | + |
|
Preference number: 6 (lower is better) Translates to: TTLAYMLPHWHL*TSASAIPSTKC Trigger: GCATTTAGTAGAAGGAATGGCACTAGCAGAAGTGCAGAGGTGCCAGTGTGGCAGCATGTAGGCCAGTGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 72 bp | GAACTCGAAAACAGATTTCTCTACAGGTGGGGAGCTTaGAGGGAGTGTGCAGCCAGGAATGGTGGTGGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: ELENRFLYRWGA*RECAARNGGGS Trigger: ACTTCCACCACCATTCCTGGCTGCACACTCCCTCCAAGCTCCCCACCTGTAGAGAAATCTGTTTTCGAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 72 bp | AGGAACTCGGGCTCCCTAACCTGTTCCTACAGGCACTaGAACTCGAAAACAGATTTCTCTACAGGTGGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RNSGSLTCSYRH*NSKTDFSTGGE Trigger: CTCCCCACCTGTAGAGAAATCTGTTTTCGAGTTCCAGTGCCTGTAGGAACAGGTTAGGGAGCCCGAGTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471488.1 |
||
| CDS CCA 72 bp | TCCCTCAAAAACACAGGCACTAGGCCAGCCTACCCATaGAACATGCCACACAGCCTTTCCAGAATCTCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: SLKNTGTRPAYP*NMPHSLSRISG Trigger: TCCAGAGATTCTGGAAAGGCTGTGTGGCATGTTCCATGGGTAGGCTGGCCTAGTGCCTGTGTTTTTGAGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS CCA 72 bp | ACCACCAACCTCAAGAAAGCAATACGAGGTTTGGAGTaGAAAGGCTGGGTGCAACACTTTCCCACCCACTCC | + |
|
Preference number: 6 (lower is better) Translates to: TTNLKKAIRGLE*KGWVQHFPTHS Trigger: GGAGTGGGTGGGAAAGTGTTGCACCCAGCCTTTCCACTCCAAACCTCGTATTGCTTTCTTGAGGTTGGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000476391.5 ENST00000484305.1 |
||
| CDS GCA 72 bp | GCTAGTGCCATTCCTTCTACTAAATGCCACCCTTACTaGCATCACCTCCTTCTTCACATGGGCACCTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: ASAIPSTKCHPY*HHLLLHMGTSS Trigger: TGAGGAGGTGCCCATGTGAAGAAGGAGGTGATGGCAGTAAGGGTGGCATTTAGTAGAAGGAATGGCACTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 72 bp | AGAAAGCAATACGAGGTTTGGAGTGGAAAGGCTGGGTaGAACACTTTCCCACCCACTCCTACCTTTCCACTC | + |
|
Preference number: 6 (lower is better) Translates to: RKQYEVWSGKAG*NTFPPTPTFPL Trigger: GAGTGGAAAGGTAGGAGTGGGTGGGAAAGTGTTGCACCCAGCCTTTCCACTCCAAACCTCGTATTGCTTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000476391.5 ENST00000484305.1 |
||
| CDS CCA 72 bp | CTCAAGAAAGCAATACGAGGTTTGGAGTGGAAAGGCTaGGTGCAACACTTTCCCACCCACTCCTACCTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LKKAIRGLEWKG*VQHFPTHSYLS Trigger: GGAAAGGTAGGAGTGGGTGGGAAAGTGTTGCACCCAGCCTTTCCACTCCAAACCTCGTATTGCTTTCTTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000476391.5 ENST00000484305.1 |
||
| CDS CCA 72 bp | CTCATGCTATGTGGGAGAGAAAAGGGAGTGCTAGGCTaGAGCCCTTGCTTGCCCACTTGGGATTTCAATTTT | + |
|
Preference number: 6 (lower is better) Translates to: LMLCGREKGVLG*SPCLPTWDFNF Trigger: AAAATTGAAATCCCAAGTGGGCAAGCAAGGGCTCCAGCCTAGCACTCCCTTTTCTCTCCCACATAGCATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000476391.5 ENST00000484305.1 |
||
| CDS GCA 72 bp | CTGACTGGCAAAGGGCTTTCCCAGACAAAGCCAGTCTaGAAAGACTGGAGTAAGTCCCTACTTCTTCTAATG | + |
|
Preference number: 6 (lower is better) Translates to: LTGKGLSQTKPV*KDWSKSLLLLM Trigger: CATTAGAAGAAGTAGGGACTTACTCCAGTCTTTGCAGACTGGCTTTGTCTGGGAAAGCCCTTTGCCAGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||
| CDS GCA 72 bp | CTCTGCACTTCTGCTAGTGCCATTCCTTCTACTAAATaGCACCCTTACTGCCATCACCTCCTTCTTCACATG | + |
|
Preference number: 6 (lower is better) Translates to: LCTSASAIPSTK*HPYCHHLLLHM Trigger: CATGTGAAGAAGGAGGTGATGGCAGTAAGGGTGGCATTTAGTAGAAGGAATGGCACTAGCAGAAGTGCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476391.5 |
||