Pregenerated sensors for HCRT (Homo sapiens)
Ensembl gene IDs: ENSG00000161610Ensembl transcript IDs: ENST00000293330.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGCGGCCCATGGTCAGGATGCCCGCGGCGTGGTTGCCGCTGGCCTaGAGGAGGCGCTGCAGCCGACCCTGGAGGCCCGGGGGCCCGGAC | + |
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Preference number: 5 (lower is better) Translates to: RRPMVRMPAAWLPLA*RRRCSRPWRPGGPD Trigger: GTCCGGGCCCCCGGGCCTCCAGGGTCGGCTGCAGCGCCTCCTGCAGGCCAGCGGCAACCACGCCGCGGGCATCCTGACCATGGGCCGCCG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS TCA 90 bp | GCCGACCCTGGAGGCCCGGGGGCCCGGACCTCCGCTTGCCCAGCGTaGGGATGCCGGCCGCGTGATTGCCCGCGCCGTGCAGCAGCTCGT | + |
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Preference number: 5 (lower is better) Translates to: ADPGGPGARTSACPA*GCRPRDCPRRAAAR Trigger: ACGAGCTGCTGCACGGCGCGGGCAATCACGCGGCCGGCATCCTCACGCTGGGCAAGCGGAGGTCCGGGCCCCCGGGCCTCCAGGGTCGGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CCA 90 bp | CACGGCGGCCCAGGAGACCTTTGTGGAAGGAAGGTTCATGGTGTCTaGCGCTCAGGGTGGGGTAGCCGGGAAAGGAGATGTCTGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: HGGPGDLCGRKVHGV*RSGWGSRERRCLWW Trigger: CCACCACAGACATCTCCTTTCCCGGCTACCCCACCCTGAGCGCCAGACACCATGAACCTTCCTTCCACAAAGGTCTCCTGGGCCGCCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CCA 90 bp | GGAGACCTTTGTGGAAGGAAGGTTCATGGTGTCTGGCGCTCAGGGTaGGGTAGCCGGGAAAGGAGATGTCTGTGGTGGTTCAAAAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: GDLCGRKVHGVWRSG*GSRERRCLWWFKKP Trigger: TGGCTTTTTGAACCACCACAGACATCTCCTTTCCCGGCTACCCCACCCTGAGCGCCAGACACCATGAACCTTCCTTCCACAAAGGTCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS TCA 72 bp | GGAGGCCCGGGGGCCCGGACCTCCGCTTGCCCAGCGTaGGGATGCCGGCCGCGTGATTGCCCGCGCCGTGCA | + |
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Preference number: 6 (lower is better) Translates to: GGPGARTSACPA*GCRPRDCPRRA Trigger: TGCACGGCGCGGGCAATCACGCGGCCGGCATCCTCACGCTGGGCAAGCGGAGGTCCGGGCCCCCGGGCCTCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS GCA 72 bp | CTGGCTCTGCGCCTGCGCGGCGGCCCATGGTCAGGATaGCCGCGGCGTGGTTGCCGCTGGCCTGCAGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LALRLRGGPWSG*PRRGCRWPAGG Trigger: GCCTCCTGCAGGCCAGCGGCAACCACGCCGCGGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCCAG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS GCA 72 bp | ATGGTCAGGATGCCCGCGGCGTGGTTGCCGCTGGCCTaGAGGAGGCGCTGCAGCCGACCCTGGAGGCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: MVRMPAAWLPLA*RRRCSRPWRPG Trigger: CCCGGGCCTCCAGGGTCGGCTGCAGCGCCTCCTGCAGGCCAGCGGCAACCACGCCGCGGGCATCCTGACCAT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CAA 90 bp | GCCCGCGCCGTGCAGCAGCTCGTAGAGGCGGCAAGAGCAAGTCTTTaGACGACAGCAGTCGGGCAGGGGCTGTGCAGCCGCCCCGGACGA | + |
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Preference number: 6 (lower is better) Translates to: ARAVQQLVEAARASL*TTAVGQGLCSRPGR Trigger: TCGTCCGGGGCGGCTGCACAGCCCCTGCCCGACTGCTGTCGTCAAAAGACTTGCTCTTGCCGCCTCTACGAGCTGCTGCACGGCGCGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CAA 72 bp | GTGCAGCAGCTCGTAGAGGCGGCAAGAGCAAGTCTTTaGACGACAGCAGTCGGGCAGGGGCTGTGCAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VQQLVEAARASL*TTAVGQGLCSR Trigger: GCGGCTGCACAGCCCCTGCCCGACTGCTGTCGTCAAAAGACTTGCTCTTGCCGCCTCTACGAGCTGCTGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CCA 72 bp | TGTGGAAGGAAGGTTCATGGTGTCTGGCGCTCAGGGTaGGGTAGCCGGGAAAGGAGATGTCTGTGGTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: CGRKVHGVWRSG*GSRERRCLWWF Trigger: GAACCACCACAGACATCTCCTTTCCCGGCTACCCCACCCTGAGCGCCAGACACCATGAACCTTCCTTCCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CCA 72 bp | CCAGGAGACCTTTGTGGAAGGAAGGTTCATGGTGTCTaGCGCTCAGGGTGGGGTAGCCGGGAAAGGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: PGDLCGRKVHGV*RSGWGSRERRC Trigger: ACATCTCCTTTCCCGGCTACCCCACCCTGAGCGCCAGACACCATGAACCTTCCTTCCACAAAGGTCTCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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| CDS CCA 72 bp | TCAGGGTGGGGTAGCCGGGAAAGGAGATGTCTGTGGTaGTTCAAAAAGCCAGGAACCTTGAGGCTGTCAATT | + |
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Preference number: 6 (lower is better) Translates to: SGWGSRERRCLW*FKKPGTLRLSI Trigger: AATTGACAGCCTCAAGGTTCCTGGCTTTTTGAACCACCACAGACATCTCCTTTCCCGGCTACCCCACCCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000293330.1 |
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