Pregenerated sensors for HCG24 (Homo sapiens)
Ensembl gene IDs: ENSG00000230313, ENSG00000237196Ensembl transcript IDs: ENST00000414164.1, ENST00000414398.1, ENST00000426812.1, ENST00000430288.1, ENST00000457603.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATGGGCAGCCTCTATTTCCTTTATCAGTCCTGTATTGTGTTCAGTaGCAAAGCCAGGCTTGGTGTCTGTTCCATCTGGGAACGCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: DGQPLFPLSVLYCVQ*QSQAWCLFHLGTPG Trigger: TCCTGGCGTTCCCAGATGGAACAGACACCAAGCCTGGCTTTGCCACTGAACACAATACAGGACTGATAAAGGAAATAGAGGCTGCCCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000426812.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS TCA 90 bp | GCTTTCTTCTGTTTTACCAAGATGCTTGACAGTGGATATATAAAATaGCAACTTCCCTTTCTCATATGTGGCACTGAGAGATGGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: AFFCFTKMLDSGYIK*QLPFLICGTERWAA Trigger: GGCTGCCCATCTCTCAGTGCCACATATGAGAAAGGGAAGTTGTCATTTTATATATCCACTGTCAAGCATCTTGGTAAAACAGAAGAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS TCA 90 bp | GCTTTCTTCTGTTTTACCAAGATGCTTAACAGTGGATATATAAAATaGCAACTTCCCTTTCTCATGTGTGGCACTGAGAGATGGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: AFFCFTKMLNSGYIK*QLPFLMCGTERWAA Trigger: GGCTGCCCATCTCTCAGTGCCACACATGAGAAAGGGAAGTTGTCATTTTATATATCCACTGTTAAGCATCTTGGTAAAACAGAAGAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000426812.1 |
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| CDS TCA 90 bp | CAGTGGATATATAAAATGACAACTTCCCTTTCTCATATGTGGCACTaGGAGATGGGCAGCCTCTATTTCCTTTATCAGTCCTGTATTGTG | + |
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Preference number: 5 (lower is better) Translates to: QWIYKMTTSLSHMWH*EMGSLYFLYQSCIV Trigger: CACAATACAGGACTGATAAAGGAAATAGAGGCTGCCCATCTCTCAGTGCCACATATGAGAAAGGGAAGTTGTCATTTTATATATCCACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS CAA 90 bp | GGCACTGAGAGATGGGCAGCCTCTATTTCCTTTATCAGTCCTGTATaGTGTTCAGTGGCAAAGCCAGGCTTGGTGTCTGTTCCATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: GTERWAASISFISPV*CSVAKPGLVSVPSG Trigger: CCCAGATGGAACAGACACCAAGCCTGGCTTTGCCACTGAACACAATACAGGACTGATAAAGGAAATAGAGGCTGCCCATCTCTCAGTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000426812.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS CAA 72 bp | ATCAGTCCTGTATTGTGTTCAGTGGCAAAGCCAGGCTaGGTGTCTGTTCCATCTGGGAACGCCAGGAGTAAT | + |
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Preference number: 6 (lower is better) Translates to: ISPVLCSVAKPG*VSVPSGNARSN Trigger: ATTACTCCTGGCGTTCCCAGATGGAACAGACACCAAGCCTGGCTTTGCCACTGAACACAATACAGGACTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000426812.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS TCA 72 bp | TATAAAATGACAACTTCCCTTTCTCATATGTGGCACTaGGAGATGGGCAGCCTCTATTTCCTTTATCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: YKMTTSLSHMWH*EMGSLYFLYQS Trigger: GGACTGATAAAGGAAATAGAGGCTGCCCATCTCTCAGTGCCACATATGAGAAAGGGAAGTTGTCATTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS TCA 72 bp | GGCCCAGCCTGCTTTCTTCTGTTTTACCAAGATGCTTaGCAGTGGATATATAAAATGACAACTTCCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: GPACFLLFYQDA*QWIYKMTTSLS Trigger: AGAAAGGGAAGTTGTCATTTTATATATCCACTGTCAAGCATCTTGGTAAAACAGAAGAAAGCAGGCTGGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000414164.1 ENST00000414398.1 ENST00000430288.1 ENST00000457603.1 |
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| CDS CCA 72 bp | TCATTCATAGTCAAATTCCTTGCATGTAAAATTCTCTaGGTACAAAGTAGATTGCCTCCCTCTTGTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SFIVKFLACKIL*VQSRLPPSCFS Trigger: AGAAAAACAAGAGGGAGGCAATCTACTTTGTACCCAGAGAATTTTACATGCAAGGAATTTGACTATGAATGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000426812.1 |
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