Pregenerated sensors for HCG17 (Homo sapiens)
Ensembl gene IDs: ENSG00000241053, ENSG00000244695Ensembl transcript IDs: ENST00000412040.5, ENST00000414460.5, ENST00000419861.1, ENST00000424012.5, ENST00000426984.1, ENST00000435219.5, ENST00000437311.1, ENST00000439166.1, ENST00000439480.1, ENST00000448222.5, ENST00000448760.1, ENST00000453243.5, ENST00000453558.1, ENST00000455160.1, ENST00000455957.5
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAGGCTGTAATGCAAAAGTCCGCAGTCCCTACACAAACACTATCTaGTCCTGCGGAGAAACTCAAGTCACAGCCCCAGAAGTGGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: GGCNAKVRSPYTNTI*SCGETQVTAPEVER Trigger: TCTTTCCACTTCTGGGGCTGTGACTTGAGTTTCTCCGCAGGAGCAGATAGTGTTTGTGTAGGGACTGCGGACTTTTGCATTACAGCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000426984.1 ENST00000437311.1 ENST00000439166.1 ENST00000439480.1 ENST00000448760.1 ENST00000453558.1 ENST00000455160.1 |
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| CDS TCA 90 bp | GAAGGTAAAGGACCAACCAAACTGTATCTGAGTCCTCTTGCTCTATaGCTACGGTGTGGCCTGAGAAGAGATAGAAAATGTGGCCAGTCA | + |
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Preference number: 5 (lower is better) Translates to: EGKGPTKLYLSPLAL*LRCGLRRDRKCGQS Trigger: TGACTGGCCACATTTTCTATCTCTTCTCAGGCCACACCGTAGTCATAGAGCAAGAGGACTCAGATACAGTTTGGTTGGTCCTTTACCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000426984.1 ENST00000437311.1 ENST00000439480.1 ENST00000448760.1 ENST00000453558.1 ENST00000455160.1 |
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| CDS TCA 72 bp | GGTGTAAACTGGACAGATTGTGGACAGGATTCTGAGTaGGATCCTTCACTGTTCAGTCTCCTTTGCATCAGT | + |
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Preference number: 6 (lower is better) Translates to: GVNWTDCGQDSE*DPSLFSLLCIS Trigger: ACTGATGCAAAGGAGACTGAACAGTGAAGGATCTCACTCAGAATCCTGTCCACAATCTGTCCAGTTTACACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000412040.5 ENST00000414460.5 ENST00000419861.1 ENST00000424012.5 ENST00000426984.1 ENST00000435219.5 ENST00000437311.1 ENST00000439480.1 ENST00000448222.5 ENST00000448760.1 ENST00000453243.5 ENST00000453558.1 ENST00000455160.1 ENST00000455957.5 |
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| CDS TCA 72 bp | GGACCAACCAAACTGTATCTGAGTCCTCTTGCTCTATaGCTACGGTGTGGCCTGAGAAGAGATAGAAAATGT | + |
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Preference number: 6 (lower is better) Translates to: GPTKLYLSPLAL*LRCGLRRDRKC Trigger: ACATTTTCTATCTCTTCTCAGGCCACACCGTAGTCATAGAGCAAGAGGACTCAGATACAGTTTGGTTGGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000426984.1 ENST00000437311.1 ENST00000439480.1 ENST00000448760.1 ENST00000453558.1 ENST00000455160.1 |
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| CDS TCA 72 bp | GTAAGGTGTAAACTGGACAGATTGTGGACAGGATTCTaGGTGAGATCCTTCACTGTTCAGTCTCCTTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: VRCKLDRLWTGF*VRSFTVQSPLH Trigger: ATGCAAAGGAGACTGAACAGTGAAGGATCTCACTCAGAATCCTGTCCACAATCTGTCCAGTTTACACCTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000412040.5 ENST00000414460.5 ENST00000419861.1 ENST00000424012.5 ENST00000426984.1 ENST00000435219.5 ENST00000437311.1 ENST00000439480.1 ENST00000448222.5 ENST00000448760.1 ENST00000453243.5 ENST00000453558.1 ENST00000455160.1 ENST00000455957.5 |
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| CDS TCA 72 bp | GGTAAGATCTCCAAGATATATTGTGAAGTGAGAGAATaGGGTGAAGAACGTTGTATAACAGGCTACCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: GKISKIYCEVRE*GEERCITGYLS Trigger: AGAGAGGTAGCCTGTTATACAACGTTCTTCACCTCATTCTCTCACTTCACAATATATCTTGGAGATCTTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000412040.5 ENST00000414460.5 ENST00000419861.1 ENST00000424012.5 ENST00000426984.1 ENST00000435219.5 ENST00000437311.1 ENST00000439480.1 ENST00000448222.5 ENST00000448760.1 ENST00000453243.5 ENST00000453558.1 ENST00000455160.1 ENST00000455957.5 |
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