Pregenerated sensors for HBZ (Homo sapiens)
Ensembl gene IDs: ENSG00000130656Ensembl transcript IDs: ENST00000652335.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACTCAGGGACCATCTGCTCTGAACCCTGTTACTGGTGGGGAAACTaGGGTCCAAAGCAAGGCCCACTGACCCTCAGGCCAGCGTGTGAC | + |
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Preference number: 5 (lower is better) Translates to: HSGTICSEPCYWWGN*GPKQGPLTLRPACD Trigger: GTCACACGCTGGCCTGAGGGTCAGTGGGCCTTGCTTTGGACCTCAGTTTCCCCACCAGTAACAGGGTTCAGAGCAGATGGTCCCTGAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS CCA 90 bp | GAGAAGAGCCTGAGGATGTCCCCTGTAGCAAATGGAGGTTGGCCCTaGTGCTTCATTGTCCAGGAGACCCTGGGAGAACTTAGAGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: EKSLRMSPVANGGWP*CFIVQETLGELRAG Trigger: CCCAGCTCTAAGTTCTCCCAGGGTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS CCA 90 bp | TGGGGTCTTAGCAGAGAAGAGCCTGAGGATGTCCCCTGTAGCAAATaGAGGTTGGCCCTGGTGCTTCATTGTCCAGGAGACCCTGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: WGLSREEPEDVPCSK*RLALVLHCPGDPGR Trigger: TCTCCCAGGGTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTTCTCTGCTAAGACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS GCA 90 bp | AAGAGCCTGAGGATGTCCCCTGTAGCAAATGGAGGTTGGCCCTGGTaGTTCATTGTCCAGGAGACCCTGGGAGAACTTAGAGCTGGGACT | + |
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Preference number: 5 (lower is better) Translates to: KSLRMSPVANGGWPW*FIVQETLGELRAGT Trigger: AGTCCCAGCTCTAAGTTCTCCCAGGGTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS TCA 90 bp | TCAGGCCAGCGTGTGACAATGATGTCTCATTTCTGTCACAGCCAATaGGGTGCAAACATGGACATGAGGGTGGCGCTGGGATCCAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: SGQRVTMMSHFCHSQ*GANMDMRVALGSRV Trigger: CACTCTGGATCCCAGCGCCACCCTCATGTCCATGTTTGCACCTCATTGGCTGTGACAGAAATGAGACATCATTGTCACACGCTGGCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS GCA 90 bp | CCAGCGTGTGACAATGATGTCTCATTTCTGTCACAGCCAATGAGGTaGAAACATGGACATGAGGGTGGCGCTGGGATCCAGAGTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: PACDNDVSFLSQPMR*KHGHEGGAGIQSAA Trigger: AGCAGCACTCTGGATCCCAGCGCCACCCTCATGTCCATGTTTGCACCTCATTGGCTGTGACAGAAATGAGACATCATTGTCACACGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS CCA 90 bp | TTAGCAGAGAAGAGCCTGAGGATGTCCCCTGTAGCAAATGGAGGTTaGCCCTGGTGCTTCATTGTCCAGGAGACCCTGGGAGAACTTAGA | + |
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Preference number: 5 (lower is better) Translates to: LAEKSLRMSPVANGG*PWCFIVQETLGELR Trigger: TCTAAGTTCTCCCAGGGTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTTCTCTGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS TCA 72 bp | ACCATCTGCTCTGAACCCTGTTACTGGTGGGGAAACTaGGGTCCAAAGCAAGGCCCACTGACCCTCAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TICSEPCYWWGN*GPKQGPLTLRP Trigger: TGGCCTGAGGGTCAGTGGGCCTTGCTTTGGACCTCAGTTTCCCCACCAGTAACAGGGTTCAGAGCAGATGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS CCA 72 bp | AAGAGCCTGAGGATGTCCCCTGTAGCAAATGGAGGTTaGCCCTGGTGCTTCATTGTCCAGGAGACCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: KSLRMSPVANGG*PWCFIVQETLG Trigger: TCCCAGGGTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS CCA 72 bp | AGCAGAGAAGAGCCTGAGGATGTCCCCTGTAGCAAATaGAGGTTGGCCCTGGTGCTTCATTGTCCAGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: SREEPEDVPCSK*RLALVLHCPGD Trigger: GTCTCCTGGACAATGAAGCACCAGGGCCAACCTCCATTTGCTACAGGGGACATCCTCAGGCTCTTCTCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS TCA 72 bp | ATTTCTGTCACAGCCAATGAGGTGCAAACATGGACATaGGGGTGGCGCTGGGATCCAGAGTGCTGCTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: ISVTANEVQTWT*GWRWDPECCFE Trigger: CTCGAAGCAGCACTCTGGATCCCAGCGCCACCCTCATGTCCATGTTTGCACCTCATTGGCTGTGACAGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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| CDS TCA 72 bp | CGTGTGACAATGATGTCTCATTTCTGTCACAGCCAATaGGGTGCAAACATGGACATGAGGGTGGCGCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: RVTMMSHFCHSQ*GANMDMRVALG Trigger: TCCCAGCGCCACCCTCATGTCCATGTTTGCACCTCATTGGCTGTGACAGAAATGAGACATCATTGTCACACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652335.1 |
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