Pregenerated sensors for HBQ1 (Homo sapiens)
Ensembl gene IDs: ENSG00000086506Ensembl transcript IDs: ENST00000199708.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCCCTGCAGCGCGGGGCTaGAGTCTCCGGGGTAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: PGRGFTQTRGRSPGDPAAPAARG*SLRGSA Trigger: GGCACTACCCCGGAGACTTCAGCCCCGCGCTGCAGG...GGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | CCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCACGGGGAAGGTCGCCTaGGGATCCCGCGGCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: PGRGFTQTRGRSPGDPAATGKVA*GSRGHP Trigger: TGGGTGGCCGCGGGATCCCCAGGCGACCTTCCCCGT...GGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR GCA 90 bp | TCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCGCAGCTGGCACGCGTaGAGGTGGCTCAGCGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: SWERLYSNTGKVAWGSRGRSWHA*RWLSAD Trigger: GTCCGCGCTGAGCCACCTGCACGCGTGCCAGCTGCG...GCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | GCTCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGCAGTGGCCCAGGAGCTaGAAGCTGGCCGGGTCCACT | + |
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Preference number: 4 (lower is better) Translates to: APGRGFTQTRGRSPGDPAQWPRS*KLAGST Trigger: AGTGGACCCGGCCAGCTTCCAGCTCCTGGGCCACTG...CGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR TCA 90 bp | TGCTCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGTGGGCTCTGACTTGTaGGGAGCCGGGGCTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: CSWERLYSNTGKVAWGSRVGSDL*GAGAQV Trigger: GACCTGAGCCCCGGCTCCTCACAAGTCAGAGCCCAC...GCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR GCA 90 bp | TCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCTTGTCCAGCGACGCCTaGAGCGCGGGGCTGAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: SWERLYSNTGKVAWGSRGLSSDA*SAGLKS Trigger: AGACTTCAGCCCCGCGCTGCAGGCGTCGCTGGACAA...GCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | CTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCAGCGTCCGCCACCTTCTaGCCGTGGGCTCTGACTTGT | + |
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Preference number: 4 (lower is better) Translates to: LGEALLKHGEGRLGIPRPASATF*PWALTC Trigger: ACAAGTCAGAGCCCACGGCCAGAAGGTGGCGGACGC...TGGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | TGCTCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCCCAGGAGCTGGAAGCTaGCCGGGTCCACTCGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CSWERLYSNTGKVAWGSRPGAGS*PGPLAA Trigger: AGCTGCGAGTGGACCCGGCCAGCTTCCAGCTCCTGG...GCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | CTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCAGCCACCTTCTGGCCGTaGGCTCTGACTTGTGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LGEALLKHGEGRLGIPRPATFWP*ALTCEE Trigger: CTCCTCACAAGTCAGAGCCCACGGCCAGAAGGTGGC...TGGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR GCA 90 bp | TGCTCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCAGACGCCGACGTTGCTaGCCAGCTTCTTCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: CSWERLYSNTGKVAWGSRRRRRC*PASSTG Trigger: CCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCT...GCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR GCA 90 bp | TCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCTGTAGACGCCGACGTTaGTGCCCAGCTTCTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SWERLYSNTGKVAWGSRGCRRRR*CPASST Trigger: TGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACA...GCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CCA 90 bp | TGCTCCTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCAGCGCCGAGATAACGTaGCTCAGGAACTTGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: CSWERLYSNTGKVAWGSRSAEIT*LRNLSS Trigger: GCTGGACAAGTTCCTGAGCCACGTTATCTCGGCGCT...GCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS CCA 90 bp | AGGCGCTCCACGGCGAGGCTCAGCGCGTCCGCCACCTTCTGGCCGTaGGCTCTGACTTGTGAGGAGCCGGGGCTCAGGTCCAGGTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: RRSTARLSASATFWP*ALTCEEPGLRSRWE Trigger: CTCCCACCTGGACCTGAGCCCCGGCTCCTCACAAGTCAGAGCCCACGGCCAGAAGGTGGCGGACGCGCTGAGCCTCGCCGTGGAGCGCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS TCA 90 bp | CCACGGCGAGGCTCAGCGCGTCCGCCACCTTCTGGCCGTGGGCTCTaGCTTGTGAGGAGCCGGGGCTCAGGTCCAGGTGGGAGAAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: PRRGSARPPPSGRGL*LVRSRGSGPGGRSR Trigger: CCTACTTCTCCCACCTGGACCTGAGCCCCGGCTCCTCACAAGTCAGAGCCCACGGCCAGAAGGTGGCGGACGCGCTGAGCCTCGCCGTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS GCA 90 bp | GGAAGGTCCTTTCCAGGGCCTCTGTCGTGTAGACGCCGACGTTGCTaGCCAGCTTCTTCCACAGGGCGCGCACCAGCGCCCGGTCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: GRSFPGPLSCRRRRC*PASSTGRAPAPGPP Trigger: CGGAGGACCGGGCGCTGGTGCGCGCCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACACGACAGAGGCCCTGGAAAGGACCTTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS-3UTR CAA 90 bp | CTGGGAGAGGCTTTACTCAAACACGGGGAAGGTCGCCTGGGGATCCCGCGGCCAACGTGGCTCAGGAACTaGTCCAGCGACGCCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LGEALLKHGEGRLGIPRPTWLRN*SSDACS Trigger: GCTGCAGGCGTCGCTGGACAAGTTCCTGAGCCACGT...TGGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS CCA 72 bp | ACGGCGAGGCTCAGCGCGTCCGCCACCTTCTGGCCGTaGGCTCTGACTTGTGAGGAGCCGGGGCTCAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: TARLSASATFWP*ALTCEEPGLRS Trigger: GGACCTGAGCCCCGGCTCCTCACAAGTCAGAGCCCACGGCCAGAAGGTGGCGGACGCGCTGAGCCTCGCCGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS GCA 72 bp | TCCTTTCCAGGGCCTCTGTCGTGTAGACGCCGACGTTaGTGCCCAGCTTCTTCCACAGGGCGCGCACCAGCG | + |
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Preference number: 6 (lower is better) Translates to: SFPGPLSCRRRR*CPASSTGRAPA Trigger: CGCTGGTGCGCGCCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACACGACAGAGGCCCTGGAAAGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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| CDS CAA 72 bp | TCGGAAACCAGCGCCGAGATAACGTGGCTCAGGAACTaGTCCAGCGACGCCTGCAGCGCGGGGCTGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SETSAEITWLRN*SSDACSAGLKS Trigger: AGACTTCAGCCCCGCGCTGCAGGCGTCGCTGGACAAGTTCCTGAGCCACGTTATCTCGGCGCTGGTTTCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000199708.3 |
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