Pregenerated sensors for HBB (Homo sapiens)
Ensembl gene IDs: ENSG00000244734Ensembl transcript IDs: ENST00000335295.4, ENST00000380315.2, ENST00000485743.1, ENST00000633227.1, ENST00000647020.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAACAGCAAATAAAAGAAACTAAAACGATCCTGAGACTTCCACACTaGTGCAATCATTCGTCTGTTTCCCATTCTAAACTGTACCCTGTT | + |
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Preference number: 1 (lower is better) Translates to: EQQIKETKTILRLPH*CNHSSVSHSKLYPV Trigger: AACAGGGTACAGTTTAGAATGGGAAACAGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAGTTTCTTTTATTTGCTGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| 3UTR TCA 72 bp | ATAAAAGAAACTAAAACGATCCTGAGACTTCCACACTaGTGCAATCATTCGTCTGTTTCCCATTCTAAACTG | + |
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Preference number: 3 (lower is better) Translates to: IKETKTILRLPH*CNHSSVSHSKL Trigger: CAGTTTAGAATGGGAAACAGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAGTTTCTTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| CDS-3UTR GCA 90 bp | AGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTAGACCACCAGCAGCCTaGCCAGGGCCTCACCACCAA | + |
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Preference number: 4 (lower is better) Translates to: RIQMLKALHNIPQFSSWTRPPAA*PGPHHQ Trigger: TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCT...AGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000335295.4 ENST00000647020.1 |
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| CDS-3UTR GCA 90 bp | GAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAGACCACCAGCAGCCTaGCCAGGGCCTCACCACCAA | + |
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Preference number: 4 (lower is better) Translates to: ESRCSRPFIISPSLVVGLRPPAA*PGPHHQ Trigger: TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCT...AAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000335295.4 ENST00000647020.1 |
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| CDS-3UTR GCA 90 bp | GATGCAATCATTCGTCTGTTTCCCATTCTAAACTGTACCCTGTTACTTATCCCCAGACCACCAGCAGCCTaGCCAGGGCCTCACCACCAA | + |
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Preference number: 4 (lower is better) Translates to: DAIIRLFPILNCTLLLIPRPPAA*PGPHHQ Trigger: TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCT...GGGGATAAGTAACAGGGTACAGTTTAGAATGGGAAACAGACGAATGATTGCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| CDS-3UTR TCA 90 bp | AGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTCGTTGCCCAGGAGCCTaGAGTTCTCAGGATCCACGT | + |
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Preference number: 4 (lower is better) Translates to: RIQMLKALHNIPQFSSWTRCPGA*SSQDPR Trigger: ACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACG...AGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR TCA 90 bp | TTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTCGTTGCCCAGGAGCCTaGAGTTCTCAGGATCCACGT | + |
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Preference number: 4 (lower is better) Translates to: LGRIQMLKALHNIPQFSSRCPGA*SSQDPR Trigger: ACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACG...ACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CCA 90 bp | TTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTCTCCTGGGAGTAGATTaGCCAACCCTAGGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LGRIQMLKALHNIPQFSSLLGVD*PTLGCG Trigger: GCCACACCCTAGGGTTGGCCAATCTACTCCCAGGAG...ACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS-3UTR CCA 90 bp | TTTTTATTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTGCCAACCCTAGGGTGTaGCTCCACAGGGTGAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: FLLGRIQMLKALHNIPQFANPRV*LHRVRS Trigger: AGACCTCACCCTGTGGAGCCACACCCTAGGGTTGGC...AAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS-3UTR TCA 90 bp | TTTTTATTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTCGTTGCCCAGGAGCCTaGAGTTCTCAGGATCCACGT | + |
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Preference number: 4 (lower is better) Translates to: FLLGRIQMLKALHNIPQFRCPGA*SSQDPR Trigger: ACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACG...AAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR TCA 90 bp | TCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAGGGAACAAAGGCCTGCACTGGTGGGGTaGATTCTTTGCCAAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: SRPFIISPSLVVGLREQRPALVG*ILCQSD Trigger: ATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGG...CCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR GCA 90 bp | TCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAGGGAACAAAGGAGCAATAGATGGCTCTaGCCTGACTTTTATGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SRPFIISPSLVVGLREQRSNRWL*PDFYAQ Trigger: CTGGGCATAAAAGTCAGGGCAGAGCCATCTATTGCT...CCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS-3UTR TCA 90 bp | GAACCTTTAATAGAAATTGGACAGCAAGAAAGCGAGCTTAGTGATACTTGTGGGCCTGCACTGGTGGGGTaGATTCTTTGCCAAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: EPLIEIGQQESELSDTCGPALVG*ILCQSD Trigger: ATCACTTTGGCAAAGAATTCACCCCACCAGTGCAGG...CCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000633227.1 |
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| CDS-3UTR TCA 90 bp | GATGCAATCATTCGTCTGTTTCCCATTCTAAACTGTACCCTGTTACTTATCCCCAAACTAAAACGATCCTaGGACTTCCACACTGATGCA | + |
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Preference number: 4 (lower is better) Translates to: DAIIRLFPILNCTLLLIPKLKRS*DFHTDA Trigger: TGCATCAGTGTGGAAGTCTCAGGATCGTTTTAGTTT...GGGGATAAGTAACAGGGTACAGTTTAGAATGGGAAACAGACGAATGATTGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| CDS-3UTR TCA 90 bp | GTACCCTGTTACTTATCCCCTTCCTATGACATGAACTTAACCATAGAAAAGAAGCTGAGACTTCCACACTaGTGCAATCATTCGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: VPCYLSPSYDMNLTIEKKLRLPH*CNHSSV Trigger: AACAGACGAATGATTGCATCAGTGTGGAAGTCTCAG...CTTCTTTTCTATGGTTAAGTTCATGTCATAGGAAGGGGATAAGTAACAGGGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| CDS-3UTR CCA 90 bp | AGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTACCTTTAATAGAAATTaGACAGCAAGAAAGCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: RIQMLKALHNIPQFSSWTTFNRN*TARKRA Trigger: AGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGT...AGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CCA 90 bp | AGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAGGGAACAAAGGAACACCTTTAATAGAAATTaGACAGCAAGAAAGCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: RPFIISPSLVVGLREQRNTFNRN*TARKRA Trigger: AGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGT...GTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CCA 90 bp | GAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAATGTAAGCAATAGATaGCTCTGCCCTGACTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: ESRCSRPFIISPSLVVGLNVSNR*LCPDFY Trigger: ATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATT...AAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS-3UTR TCA 90 bp | CACACTGATGCAATCATTCGTCTGTTTCCCATTCTAAACTGTACCCTGTTACTTCTTATCCCCTTCCTATaGCATGAACTTAACCATAGA | + |
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Preference number: 4 (lower is better) Translates to: HTDAIIRLFPILNCTLLLLIPFL*HELNHR Trigger: TCTATGGTTAAGTTCATGTCATAGGAAGGGGATAAG...AAGTAACAGGGTACAGTTTAGAATGGGAAACAGACGAATGATTGCATCAGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485743.1 |
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| CDS-3UTR CCA 90 bp | TTATTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTACCTTTAATAGAAATTaGACAGCAAGAAAGCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: LLGRIQMLKALHNIPQFSTFNRN*TARKRA Trigger: AGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGT...ACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CAA 90 bp | AGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTAGGGAACAAAGGAACACACAGACCAGCACGTaGCCCAGGAGCCTGAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: RPFIISPSLVVGLREQRNTQTST*PRSLKF Trigger: GAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGT...GTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CAA 90 bp | GAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGTTGGACTTACACAGACCAGCACGTaGCCCAGGAGCCTGAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: ESRCSRPFIISPSLVVGLTQTST*PRSLKF Trigger: GAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGT...AAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000335295.4 ENST00000633227.1 ENST00000647020.1 |
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| CDS-3UTR CAA 90 bp | TTTTTATTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTGCTCCTGGGAGTAGATaGGCCAACCCTAGGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: FLLGRIQMLKALHNIPQFAPGSR*ANPRVW Trigger: CCACACCCTAGGGTTGGCCAATCTACTCCCAGGAGC...AAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS GCA 72 bp | GTTGTGTCAGAAGCAAATGTAAGCAATAGATGGCTCTaGCCTGACTTTTATGCCCAGCCCTGGCTCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: VVSEANVSNRWL*PDFYAQPWLLP Trigger: GGGCAGGAGCCAGGGCTGGGCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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| CDS GCA 72 bp | ATGAACTATGGATCCTTCTCTTGTGTTGGCAACTGCTaGAGATACCATCATCCTGGCTTCAAGGCAGGGGTT | + |
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Preference number: 6 (lower is better) Translates to: MNYGSFSCVGNC*RYHHPGFKAGV Trigger: AACCCCTGCCTTGAAGCCAGGATGATGGTATCTGCAGCAGTTGCCAACACAAGAGAAGGATCCATAGTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380315.2 |
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| CDS GCA 72 bp | ATGATGAACTATGGATCCTTCTCTTGTGTTGGCAACTaGTGCAGATACCATCATCCTGGCTTCAAGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: MMNYGSFSCVGN*CRYHHPGFKAG Trigger: CCCTGCCTTGAAGCCAGGATGATGGTATCTGCAGCAGTTGCCAACACAAGAGAAGGATCCATAGTTCATCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380315.2 |
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| CDS CCA 72 bp | AACACAGTTGTGTCAGAAGCAAATGTAAGCAATAGATaGCTCTGCCCTGACTTTTATGCCCAGCCCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: NTVVSEANVSNR*LCPDFYAQPWL Trigger: GAGCCAGGGCTGGGCATAAAAGTCAGGGCAGAGCCATCTATTGCTTACATTTGCTTCTGACACAACTGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647020.1 |
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