RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HAVCR1 (Homo sapiens)

Ensembl gene IDs: ENSG00000113249

Ensembl transcript IDs: ENST00000339252.7, ENST00000522693.5, ENST00000523175.6, ENST00000625904.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TGTGCCTTCCAAAGGACAGGGAAAGCTGTCCACAGAAACAGCCCCTaGCTTCCCAGCTTCTTCCCCACACATAACCGCCAAACTGACTCC +
Preference number: 5 (lower is better)
Translates to: CAFQRTGKAVHRNSP*LPSFFPTHNRQTDS
Trigger: GGAGTCAGTTTGGCGGTTATGTGTGGGGAAGAAGCTGGGAAGTCAGGGGCTGTTTCTGTGGACAGCTTTCCCTGTCCTTTGGAAGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000339252.7
ENST00000625904.2
CDS TCA 90 bp AAGACCACATATAACGGCTTCAGAGCTCTGTTAGTTCCCTGCAGCTaGGAGCTCTGTGCCTTCCAAAGGACAGGGAAAGCTGTCCACAGA +
Preference number: 5 (lower is better)
Translates to: KTTYNGFRALLVPCS*ELCAFQRTGKAVHR
Trigger: TCTGTGGACAGCTTTCCCTGTCCTTTGGAAGGCACAGAGCTCTCAGCTGCAGGGAACTAACAGAGCTCTGAAGCCGTTATATGTGGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000339252.7
ENST00000625904.2
CDS GCA 90 bp TGCATTATGGGATCAGCGTTCAGATCCAGGCTCTGTCACTCACAATaGTGGGTAACCCTGAGAGTTCCTGAGTTCTCTTCAAACCTCTAT +
Preference number: 5 (lower is better)
Translates to: CIMGSAFRSRLCHSQ*WVTLRVPEFSSNLY
Trigger: ATAGAGGTTTGAAGAGAACTCAGGAACTCTCAGGGTTACCCAGCATTGTGAGTGACAGAGCCTGGATCTGAACGCTGATCCCATAATGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523175.6
CDS GCA 90 bp ATTCATATGAGCCTGCTGTTCAGATCCAGGCTCTGTCACTCACAATaGTGGGTAACCCTGAGAGTTCCTGAGTTCTCTTCAAACCTCTAT +
Preference number: 5 (lower is better)
Translates to: IHMSLLFRSRLCHSQ*WVTLRVPEFSSNLY
Trigger: ATAGAGGTTTGAAGAGAACTCAGGAACTCTCAGGGTTACCCAGCATTGTGAGTGACAGAGCCTGGATCTGAACAGCAGGCTCATATGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522693.5
CDS TCA 90 bp TTTTCACCCAGTTGGTTGATTCATATGAGCCTGCTCTGCTGGAAATaGGAGAAGACCACATATAACGGCTTCAGAGCTCTGTTAGTTCCC +
Preference number: 5 (lower is better)
Translates to: FSPSWLIHMSLLCWK*EKTTYNGFRALLVP
Trigger: GGGAACTAACAGAGCTCTGAAGCCGTTATATGTGGTCTTCTCTCATTTCCAGCAGAGCAGGCTCATATGAATCAACCAACTGGGTGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000339252.7
ENST00000625904.2
CDS GCA 72 bp AGCCTGCTGTTCAGATCCAGGCTCTGTCACTCACAATaGTGGGTAACCCTGAGAGTTCCTGAGTTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: SLLFRSRLCHSQ*WVTLRVPEFSS
Trigger: TGAAGAGAACTCAGGAACTCTCAGGGTTACCCAGCATTGTGAGTGACAGAGCCTGGATCTGAACAGCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522693.5
CDS GCA 72 bp GGATCAGCGTTCAGATCCAGGCTCTGTCACTCACAATaGTGGGTAACCCTGAGAGTTCCTGAGTTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: GSAFRSRLCHSQ*WVTLRVPEFSS
Trigger: TGAAGAGAACTCAGGAACTCTCAGGGTTACCCAGCATTGTGAGTGACAGAGCCTGGATCTGAACGCTGATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523175.6
CDS CAA 72 bp GGGATCAGCCTGAAGGAAAATGAGCAGACAGGCTGGTaGGTACCCTCCACCAGATGGTATCTGATCAAGTCT +
Preference number: 6 (lower is better)
Translates to: GISLKENEQTGW*VPSTRWYLIKS
Trigger: AGACTTGATCAGATACCATCTGGTGGAGGGTACCAACCAGCCTGTCTGCTCATTTTCCTTCAGGCTGATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000339252.7
ENST00000522693.5
ENST00000625904.2
CDS CCA 72 bp TATGGGATCAGCCTGAAGGAAAATGAGCAGACAGGCTaGTTGGTACCCTCCACCAGATGGTATCTGATCAAG +
Preference number: 6 (lower is better)
Translates to: YGISLKENEQTG*LVPSTRWYLIK
Trigger: CTTGATCAGATACCATCTGGTGGAGGGTACCAACCAGCCTGTCTGCTCATTTTCCTTCAGGCTGATCCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000339252.7
ENST00000522693.5
ENST00000625904.2
CDS CCA 72 bp TCAGCGTTCAGATCCAGGCTCTGTCACTCACAATGCTaGGTAACCCTGAGAGTTCCTGAGTTCTCTTCAAAC +
Preference number: 6 (lower is better)
Translates to: SAFRSRLCHSQC*VTLRVPEFSSN
Trigger: GTTTGAAGAGAACTCAGGAACTCTCAGGGTTACCCAGCATTGTGAGTGACAGAGCCTGGATCTGAACGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523175.6
CDS TCA 72 bp AGTTGGTTGATTCATATGAGCCTGCTCTGCTGGAAATaGGAGAAGACCACATATAACGGCTTCAGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: SWLIHMSLLCWK*EKTTYNGFRAL
Trigger: CAGAGCTCTGAAGCCGTTATATGTGGTCTTCTCTCATTTCCAGCAGAGCAGGCTCATATGAATCAACCAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000339252.7
ENST00000625904.2
CDS CAA 72 bp AATCTCAGATTGCAACTTATCTTTTCACCCAGTTGGTaGATTCATATGAGCCTGCTGTTCAGATCCAGGCTC +
Preference number: 6 (lower is better)
Translates to: NLRLQLIFSPSW*IHMSLLFRSRL
Trigger: GAGCCTGGATCTGAACAGCAGGCTCATATGAATCAACCAACTGGGTGAAAAGATAAGTTGCAATCTGAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522693.5
CDS TCA 72 bp GCACTAAAAATGCTTCCTCTATCTCCCACCAAGGATTaGTATAATAAGCAAAAAGGGCCACGGAAGAACTTG +
Preference number: 6 (lower is better)
Translates to: ALKMLPLSPTKD*YNKQKGPRKNL
Trigger: CAAGTTCTTCCGTGGCCCTTTTTGCTTATTATATCAATCCTTGGTGGGAGATAGAGGAAGCATTTTTAGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000522693.5
ENST00000523175.6
CDS CCA 72 bp TTAAATCTCAGATTGCAACTTATCTTTTCACCCAGTTaGTTGATTCATATGAGCCTGCTGTTCAGATCCAGG +
Preference number: 6 (lower is better)
Translates to: LNLRLQLIFSPS*LIHMSLLFRSR
Trigger: CCTGGATCTGAACAGCAGGCTCATATGAATCAACCAACTGGGTGAAAAGATAAGTTGCAATCTGAGATTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000522693.5