Pregenerated sensors for H3-4 (Homo sapiens)
Ensembl gene IDs: ENSG00000168148Ensembl transcript IDs: ENST00000366696.2, ENST00000644869.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCCCTGCCGCCAGTGGCAGGTaGGCTCTTGCGAGCCACCTT | + |
|
Preference number: 4 (lower is better) Translates to: KRAFGVNVAQPLRWRDSPAASGR*ALASHL Trigger: AAGGTGGCTCGCAAGAGCGCACCTGCCACTGGCGGC...AGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR GCA 90 bp | AAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCCCTCTTTGGGGTGAACGTTaGGCAACCTCTCAGGTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: KRAFGVNVAQPLRWRDSPLWGER*ATSQVA Trigger: CGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAG...AGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR CCA 90 bp | CTTAAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCGCGCAACCTCTCAGGTaGCGAGATAGCCCTCCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LKRAFGVNVAQPLRWRDSAQPLR*RDSPPR Trigger: CCTAGGAGGGCTATCTCGCCACCTGAGAGGTTGCGC...GCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR TCA 90 bp | CTTAAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCGCTTGGTTCGGGCCATaGATCCGAAACTGTTGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LKRAFGVNVAQPLRWRDSAWFGP*IRNCWP Trigger: GGGCCAACAGTTTCGGATTCATGGCCCGAACCAAGC...GCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366696.2 |
||
| CDS-3UTR TCA 90 bp | AAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCCCTAAAGAGCCTTTGGGGTaGACGTTGCGCAACCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KRAFGVNVAQPLRWRDSPKEPLG*TLRNLS Trigger: TGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTT...AGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR TCA 90 bp | CTTAAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCAAAGAGCCTTTGGGGTaGACGTTGCGCAACCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LKRAFGVNVAQPLRWRDSKEPLG*TLRNLS Trigger: TGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTT...GCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR CAA 90 bp | AAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCCCTATGAATCCGAAACTGTaGGCCCCGCGGTGTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: KRAFGVNVAQPLRWRDSPMNPKL*APRCPL Trigger: CAGAGGACACCGCGGGGCCAACAGTTTCGGATTCAT...AGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000366696.2 |
||
| CDS-3UTR CAA 90 bp | AAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCCCTATGATGGTGACCCGTTaGGCATGGATGACACACAGG | + |
|
Preference number: 5 (lower is better) Translates to: KRAFGVNVAQPLRWRDSPMMVTR*AWMTHR Trigger: CCTGTGTGTCATCCATGCCAAACGGGTCACCATCAT...AGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS-3UTR CAA 90 bp | CTTAAAAGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTGGCGAGATAGCATGATGGTGACCCGTTaGGCATGGATGACACACAGG | + |
|
Preference number: 5 (lower is better) Translates to: LKRAFGVNVAQPLRWRDSMMVTR*AWMTHR Trigger: CCTGTGTGTCATCCATGCCAAACGGGTCACCATCAT...GCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCTTTTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||
| CDS CCA 72 bp | AGAGCCTTTGGGGTGAACGTTGCGCAACCTCTCAGGTaGCGAGATAGCCCTCCTAGGCCCGCTCCCCGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: RAFGVNVAQPLR*RDSPPRPAPRG Trigger: TCCGCGGGGAGCGGGCCTAGGAGGGCTATCTCGCCACCTGAGAGGTTGCGCAACGTTCACCCCAAAGGCTCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366696.2 ENST00000644869.3 |
||