Pregenerated sensors for H3-3A-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000272562

Ensembl transcript IDs: ENST00000609423.1, ENST00000658138.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGATCACACGGCCCCCACGGGCGGGCAGGACAAGCCACCAGGCCCTaGTGCAGGAGCTGCGCGCTCCACACATTGTTTAGAGGCCGACGC	+
Preference number: 5 (lower is better) Translates to: RSHGPHGRAGQATRP*CRSCALHTLFRGRR Trigger: GCGTCGGCCTCTAAACAATGTGTGGAGCGCGCAGCTCCTGCACCAGGGCCTGGTGGCTTGTCCTGCCCGCCCGTGGGGGCCGTGTGATCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000609423.1 ENST00000658138.1
CDS CCA 90 bp	CAAGAGTCCAAAAGCCAAAGAACCTGGAGTCTGATGCTTCAGGGCTaGAAGCATCCATGTCATTTAACATTTCTTGAAGATATGATGCAT	+
Preference number: 5 (lower is better) Translates to: QESKSQRTWSLMLQG*KHPCHLTFLEDMMH Trigger: ATGCATCATATCTTCAAGAAATGTTAAATGACATGGATGCTTCCAGCCCTGAAGCATCAGACTCCAGGTTCTTTGGCTTTTGGACTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658138.1
CDS CAA 72 bp	ACCAGGCCCTGGTGCAGGAGCTGCGCGCTCCACACATaGTTTAGAGGCCGACGCGACACAGCCATCTTGCGT	+
Preference number: 6 (lower is better) Translates to: TRPWCRSCALHT*FRGRRDTAILR Trigger: ACGCAAGATGGCTGTGTCGCGTCGGCCTCTAAACAATGTGTGGAGCGCGCAGCTCCTGCACCAGGGCCTGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000609423.1 ENST00000658138.1
CDS CCA 72 bp	CTGTGGCCCAAGGCTGGAGAGTTCCTGGGAAACCACTaGTGTAACTCCAAGAGTCCAAAAGCCAAAGAACCT	+
Preference number: 6 (lower is better) Translates to: LWPKAGEFLGNH*CNSKSPKAKEP Trigger: AGGTTCTTTGGCTTTTGGACTCTTGGAGTTACACCAGTGGTTTCCCAGGAACTCTCCAGCCTTGGGCCACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658138.1
CDS CAA 72 bp	TCTTTGCTTCACTTAGACTTTGCAGGTACCTTCCCCTaGACCCTGTGTACCCACTATAGCACCAACCTGAAT	+
Preference number: 6 (lower is better) Translates to: SLLHLDFAGTFP*TLCTHYSTNLN Trigger: ATTCAGGTTGGTGCTATAGTGGGTACACAGGGTCAAGGGGAAGGTACCTGCAAAGTCTAAGTGAAGCAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658138.1
CDS GCA 72 bp	CATTCTCAAAGGATAGTCTTTGCTTCACTTAGACTTTaGAGGTACCTTCCCCTTGACCCTGTGTACCCACTA	+
Preference number: 6 (lower is better) Translates to: HSQRIVFASLRL*RYLPLDPVYPL Trigger: TAGTGGGTACACAGGGTCAAGGGGAAGGTACCTGCAAAGTCTAAGTGAAGCAAAGACTATCCTTTGAGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658138.1
CDS CAA 72 bp	GAGGGTAACCAGTCACCTCTCCAGGTGCTTAAATACTaGAACCTACTAGAAAGAATTTGTGGCCTAACTTCA	+
Preference number: 6 (lower is better) Translates to: EGNQSPLQVLKY*NLLERICGLTS Trigger: TGAAGTTAGGCCACAAATTCTTTCTAGTAGGTTCAAGTATTTAAGCACCTGGAGAGGTGACTGGTTACCCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609423.1
CDS CCA 72 bp	AAAAGCCAAAGAACCTGGAGTCTGATGCTTCAGGGCTaGAAGCATCCATGTCATTTAACATTTCTTGAAGAT	+
Preference number: 6 (lower is better) Translates to: KSQRTWSLMLQG*KHPCHLTFLED Trigger: ATCTTCAAGAAATGTTAAATGACATGGATGCTTCCAGCCCTGAAGCATCAGACTCCAGGTTCTTTGGCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658138.1

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