Pregenerated sensors for H3-2 (Homo sapiens)
Ensembl gene IDs: ENSG00000273213Ensembl transcript IDs: ENST00000609879.2, ENST00000650532.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACCTTCTCTCTCCTGTTTTGTTGTAGCTACCCTGGCAGCCGACTaGATGGTGTCAACCCCCATTGAGGGTGAGTCTTCCTCTCCTAGT | + |
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Preference number: 1 (lower is better) Translates to: PPSLSCFVVATLAAD*MVSTPIEGESSSPS Trigger: ACTAGGAGAGGAAGACTCACCCTCAATGGGGGTTGACACCATCCAGTCGGCTGCCAGGGTAGCTACAACAAAACAGGAGAGAGAAGGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR CCA 90 bp | GGCCAAAGAACCTGGAGTCTGATGTCCAAAGGCAGGAGGAATGGATaGAGGCATCCAGCACAGGAGAGGGATGAAAGCCAGAACTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: GQRTWSLMSKGRRNG*RHPAQERDESQNSA Trigger: TGCAGAGTTCTGGCTTTCATCCCTCTCCTGTGCTGGATGCCTCCATCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGTTCTTTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR TCA 90 bp | ACTGGTGTTAAGTCCAAGAGTCCAAAGGCCAAAGAACCTGGAGTCTaGTGTCCAAAGGCAGGAGGAATGGATGGAGGCATCCAGCACAGG | + |
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Preference number: 1 (lower is better) Translates to: TGVKSKSPKAKEPGV*CPKAGGMDGGIQHR Trigger: CCTGTGCTGGATGCCTCCATCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGTTCTTTGGCCTTTGGACTCTTGGACTTAACACCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR TCA 90 bp | TCACATGATTACAAGGCAAAGTCCTACAGTGGGCCGTCTGCAAGCTaGGGAAGAAAGAAGCCAGTAGTGGTTCAGTCTGAGTCCAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: SHDYKAKSYSGPSAS*GRKKPVVVQSESKS Trigger: GCTTTTGGACTCAGACTGAACCACTACTGGCTTCTTTCTTCCTCAGCTTGCAGACGGCCCACTGTAGGACTTTGCCTTGTAATCATGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR-3UTR CCA 90 bp | GCTCACATGATTACAAGGCAAAGTCCTACAGTGGGCCGTCTGCAAGCTGAGGAAGGCAGGAGGAATGGATaGAGGCATCCAGCACAGGAG | + |
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Preference number: 2 (lower is better) Translates to: AHMITRQSPTVGRLQAEEGRRNG*RHPAQE Trigger: CTCCTGTGCTGGATGCCTCCATCCATTCCTCCTGCC...TTCCTCAGCTTGCAGACGGCCCACTGTAGGACTTTGCCTTGTAATCATGTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR-3UTR CCA 90 bp | TTGGGCGCTGGGGTCTCTCAATCACCAAAGATAGACATTACAGGCCAGGTAGCTATACTCCACAGGGGGTaGGGTGGTGGCAATATATCT | + |
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Preference number: 2 (lower is better) Translates to: LGAGVSQSPKIDITGQVAILHRG*GGGNIS Trigger: AGATATATTGCCACCACCCCACCCCCTGTGGAGTAT...AGCTACCTGGCCTGTAATGTCTATCTTTGGTGATTGAGAGACCCCAGCGCCCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCCAAAGGCCAAAGAACCTGGAGTCTGATGTCCAAAGGCAGGAGGAATGGATTGTTTGCCACTCTTTaGATTCGAGCTGGTGTACTT | + |
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Preference number: 2 (lower is better) Translates to: ESKGQRTWSLMSKGRRNGLFATL*IRAGVL Trigger: AAGTACACCAGCTCGAATCCAAAGAGTGGCAAACAA...TCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGTTCTTTGGCCTTTGGACTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR GCA 72 bp | AGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTaGAGTGAGCCGAGATCCCGCCAGTGCACTCCGGCC | + |
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Preference number: 3 (lower is better) Translates to: RQENGVNPGGGA*SEPRSRQCTPA Trigger: GGCCGGAGTGCACTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| 3UTR CCA 72 bp | ACCTGGAGTCTGATGTCCAAAGGCAGGAGGAATGGATaGAGGCATCCAGCACAGGAGAGGGATGAAAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: TWSLMSKGRRNG*RHPAQERDESQ Trigger: CTGGCTTTCATCCCTCTCCTGTGCTGGATGCCTCCATCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR TCA 72 bp | AAGTCCAAGAGTCCAAAGGCCAAAGAACCTGGAGTCTaGTGTCCAAAGGCAGGAGGAATGGATGGAGGCATC | + |
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Preference number: 3 (lower is better) Translates to: KSKSPKAKEPGV*CPKAGGMDGGI Trigger: GATGCCTCCATCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGTTCTTTGGCCTTTGGACTCTTGGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| 3UTR TCA 72 bp | TACAAGGCAAAGTCCTACAGTGGGCCGTCTGCAAGCTaGGGAAGAAAGAAGCCAGTAGTGGTTCAGTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: YKAKSYSGPSAS*GRKKPVVVQSE Trigger: CTCAGACTGAACCACTACTGGCTTCTTTCTTCCTCAGCTTGCAGACGGCCCACTGTAGGACTTTGCCTTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR TCA 90 bp | TACAGATATTGCCAAATACTCCACAGGGGGTGGGGTGGTGGCAATATATCTCCCAGGCGGAGCTTGCAGTaGGCCGAGATCCCGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: YRYCQILHRGWGGGNISPRRSLQ*AEIPPV Trigger: CACTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCT...GGGAGATATATTGCCACCACCCCACCCCCTGTGGAGTATTTGGCAATATCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| CDS-3UTR CCA 90 bp | TACAGATATTGCCAAATACTCCACAGGGGGTGGGGTGGTGGCAATATATCTCCCCAGTGCACTCCGGCCTaGGCGACAGAGCGAGACTCC | + |
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Preference number: 4 (lower is better) Translates to: YRYCQILHRGWGGGNISPQCTPA*ATERDS Trigger: GGAGTCTCGCTCTGTCGCCCAGGCCGGAGTGCACTG...GGGAGATATATTGCCACCACCCCACCCCCTGTGGAGTATTTGGCAATATCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| CDS-3UTR TCA 90 bp | ACCTTCTCTCTCCTGTTTTGTTGTAGCTACCCTGGCAGCCGACTGGATGGTGTCGGGCCGTCTGCAAGCTaGGGAAGAAAGAAGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: TFSLLFCCSYPGSRLDGVGPSAS*GRKKPV Trigger: TACTGGCTTCTTTCTTCCTCAGCTTGCAGACGGCCC...GACACCATCCAGTCGGCTGCCAGGGTAGCTACAACAAAACAGGAGAGAGAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR CCA 90 bp | GAGTCCAAAGGCCAAAGAACCTGGAGTCTGATGTCCAAAGGCAGGAGGAATGGAGGCAGGAGGAATGGATaGAGGCATCCAGCACAGGAG | + |
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Preference number: 4 (lower is better) Translates to: ESKGQRTWSLMSKGRRNGGRRNG*RHPAQE Trigger: CTCCTGTGCTGGATGCCTCCATCCATTCCTCCTGCC...TCCATTCCTCCTGCCTTTGGACATCAGACTCCAGGTTCTTTGGCCTTTGGACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR CCA 90 bp | CCCACCTTCTCTCTCCTGTTTTGTTGTAGCTACCCTGGCAGCCGACTGGATGGTCAAAGGCAGGAGGAATaGATGGAGGCATCCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: PTFSLLFCCSYPGSRLDGQRQEE*MEASST Trigger: TGTGCTGGATGCCTCCATCCATTCCTCCTGCCTTTG...ACCATCCAGTCGGCTGCCAGGGTAGCTACAACAAAACAGGAGAGAGAAGGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR CCA 90 bp | GCTCACATGATTACAAGGCAAAGTCCTACAGTGGGCCGTCTGCAAGCTGAGGAAGGCAAAGTCCTACAGTaGGCCGTCTGCAAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: AHMITRQSPTVGRLQAEEGKVLQ*AVCKLR Trigger: CCTCAGCTTGCAGACGGCCCACTGTAGGACTTTGCC...TTCCTCAGCTTGCAGACGGCCCACTGTAGGACTTTGCCTTGTAATCATGTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR GCA 90 bp | CCAGTAGTGGTTCAGTCTGAGTCCAAAAGCCTCAAGAGTAGGAAAGCCCATAGTCTACAGTGGGCCGTCTaGAAGCTGAGGAAGAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: PVVVQSESKSLKSRKAHSLQWAV*KLRKKE Trigger: TTCTTTCTTCCTCAGCTTGCAGACGGCCCACTGTAG...ACTATGGGCTTTCCTACTCTTGAGGCTTTTGGACTCAGACTGAACCACTACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR CCA 90 bp | CCAGTAGTGGTTCAGTCTGAGTCCAAAAGCCTCAAGAGTAGGAAAGCCCATAGTTTGTTTGCCACTCTTTaGATTCGAGCTGGTGTACTT | + |
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Preference number: 4 (lower is better) Translates to: PVVVQSESKSLKSRKAHSLFATL*IRAGVL Trigger: AAGTACACCAGCTCGAATCCAAAGAGTGGCAAACAA...ACTATGGGCTTTCCTACTCTTGAGGCTTTTGGACTCAGACTGAACCACTACTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650532.1 |
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| CDS-3UTR CAA 90 bp | TTGGGCGCTGGGGTCTCTCAATCACCAAAGATAGACATTACAGGCCAGGTAGCTCCTGGCCTCTGCCCATaGGATACTTCTAGCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: LGAGVSQSPKIDITGQVAPGLCP*DTSSTS Trigger: GGAGGTGCTAGAAGTATCCAATGGGCAGAGGCCAGG...AGCTACCTGGCCTGTAATGTCTATCTTTGGTGATTGAGAGACCCCAGCGCCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| CDS-3UTR CAA 90 bp | TACAGATATTGCCAAATACTCCACAGGGGGTGGGGTGGTGGCAATATATCTCCCAGGTTAGGGATGTCTTaGGGCGCTGGGGTCTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: YRYCQILHRGWGGGNISPRLGMS*GAGVSQ Trigger: TTGAGAGACCCCAGCGCCCAAAGACATCCCTAACCT...GGGAGATATATTGCCACCACCCCACCCCCTGTGGAGTATTTGGCAATATCTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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| CDS-3UTR CAA 90 bp | TTGGGCGCTGGGGTCTCTCAATCACCAAAGATAGACATTACAGGCCAGGTAGCTAAACATCTACAGATATaGCCAAATACTCCACAGGGG | + |
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Preference number: 5 (lower is better) Translates to: LGAGVSQSPKIDITGQVAKHLQI*PNTPQG Trigger: CCCCTGTGGAGTATTTGGCAATATCTGTAGATGTTT...AGCTACCTGGCCTGTAATGTCTATCTTTGGTGATTGAGAGACCCCAGCGCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609879.2 |
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