RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H2BW2 (Homo sapiens)

Ensembl gene IDs: ENSG00000101812

Ensembl transcript IDs: ENST00000355016.7, ENST00000355016.8, ENST00000675318.3

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTTGCAGTCCCAGAGTATGTTCTCTTGTCCACATACTCGGGCGACTaGAAATCAATGGAAAAGGAAAGCAATGGGAAAGTGAGCACCTGC +
Preference number: 1 (lower is better)
Translates to: VAVPEYVLLSTYSGD*KSMEKESNGKVSTC
Trigger: GCAGGTGCTCACTTTCCCATTGCTTTCCTTTTCCATTGATTTCCAGTCGCCCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR-3UTR TCA 90 bp AAATTCCTGTGGGTTGCAGTCCCAGAGTATGTTCTCTTGTCCACATACTCGGGCAAAGCAATGGGAAAGTaGGCACCTGCTCTGAAATTC +
Preference number: 2 (lower is better)
Translates to: KFLWVAVPEYVLLSTYSGKAMGK*APALKF
Trigger: GAATTTCAGAGCAGGTGCTCACTTTCCCATTGCTTT...GCCCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR-3UTR TCA 90 bp AAATTCCTGTGGGTTGCAGTCCCAGAGTATGTTCTCTTGTCCACATACTCGGGCGAAATAAGCCTTATCTaGCTTCTACTAATGGTTGCC +
Preference number: 2 (lower is better)
Translates to: KFLWVAVPEYVLLSTYSGEISLI*LLLMVA
Trigger: GGCAACCATTAGTAGAAGTCAGATAAGGCTTATTTC...GCCCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR-3UTR TCA 90 bp ATAAATTCCTGTGGGTTGCAGTCCCAGAGTATGTTCTCTTGTCCACATACTCGGAGTGAGCACCTGCTCTaGAATTCAGCAATACACTTA +
Preference number: 2 (lower is better)
Translates to: INSCGLQSQSMFSCPHTRSEHLL*NSAIHL
Trigger: TAAGTGTATTGCTGAATTTCAGAGCAGGTGCTCACT...CCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR-3UTR GCA 90 bp ACATACTCGGGCGACTGGAAATCAATGGAAAAGGAAAGCAATGGGAAAGTGAGCGGTAAAGAATCACACTaGCGTTCCTTTAAACACCAG +
Preference number: 2 (lower is better)
Translates to: TYSGDWKSMEKESNGKVSGKESH*RSFKHQ
Trigger: CTGGTGTTTAAAGGAACGGCAGTGTGATTCTTTACC...GCTCACTTTCCCATTGCTTTCCTTTTCCATTGATTTCCAGTCGCCCGAGTATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR CCA 72 bp ATGTTGAGCTTCAAGGCACAACATAATAAATTCCTGTaGGTTGCAGTCCCAGAGTATGTTCTCTTGTCCACA +
Preference number: 3 (lower is better)
Translates to: MLSFKAQHNKFL*VAVPEYVLLST
Trigger: TGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTTATTATGTTGTGCCTTGAAGCTCAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR-3UTR CAA 90 bp ATAAATTCCTGTGGGTTGCAGTCCCAGAGTATGTTCTCTTGTCCACATACTCGGAGTAAGGAAGGTTTCTaGCTTCTTGTATCAGCATAT +
Preference number: 3 (lower is better)
Translates to: INSCGLQSQSMFSCPHTRSKEGF*LLVSAY
Trigger: ATATGCTGATACAAGAAGCAAGAAACCTTCCTTACT...CCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR TCA 72 bp ATTTACGGGAAACATTTAACAAAAATGGCCACATGTTaGGCTTCAAGGCACAACATAATAAATTCCTGTGGG +
Preference number: 3 (lower is better)
Translates to: IYGKHLTKMATC*ASRHNIINSCG
Trigger: CCCACAGGAATTTATTATGTTGTGCCTTGAAGCTCAACATGTGGCCATTTTTGTTAAATGTTTCCCGTAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR TCA 72 bp GATTTTTGTCATTTATCCAGCTTTTGTTTCATGGTTTaGCTGAGAGTGCCATCCTTTACTGGTTTCTACATA +
Preference number: 3 (lower is better)
Translates to: DFCHLSSFCFMV*LRVPSFTGFYI
Trigger: TATGTAGAAACCAGTAAAGGATGGCACTCTCAGTCAAACCATGAAACAAAAGCTGGATAAATGACAAAAATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR CAA 72 bp AAATTCCTGTGGGTTGCAGTCCCAGAGTATGTTCTCTaGTCCACATACTCGGGCGACTGGAAATCAATGGAA +
Preference number: 4 (lower is better)
Translates to: KFLWVAVPEYVL*STYSGDWKSME
Trigger: TTCCATTGATTTCCAGTCGCCCGAGTATGTGGACAAGAGAACATACTCTGGGACTGCAACCCACAGGAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR CAA 72 bp AATTTACGGGAAACATTTAACAAAAATGGCCACATGTaGAGCTTCAAGGCACAACATAATAAATTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: NLRETFNKNGHM*SFKAQHNKFLW
Trigger: CCACAGGAATTTATTATGTTGTGCCTTGAAGCTCAACATGTGGCCATTTTTGTTAAATGTTTCCCGTAAATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000355016.7
3UTR CAA 72 bp CATCCTTTACTGGTTTCTACATATGAAGGAGAAGGGTaGTTTATGAGATGTTTCAAAATTTACGGGAAACAT +
Preference number: 4 (lower is better)
Translates to: HPLLVSTYEGEG*FMRCFKIYGKH
Trigger: ATGTTTCCCGTAAATTTTGAAACATCTCATAAACAACCCTTCTCCTTCATATGTAGAAACCAGTAAAGGATG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000355016.7
CDS GCA 90 bp AGGAAGGTTTCTTGCTTCTTGTATCAGCATATTCACTTTCTCTGTTaGCATATCGCACATAATGAAGTTCTGAGGGCGGCATTCGTGCCC +
Preference number: 5 (lower is better)
Translates to: RKVSCFLYQHIHFLC*HIAHNEVLRAAFVP
Trigger: GGGCACGAATGCCGCCCTCAGAACTTCATTATGTGCGATATGGCAACAGAGAAAGTGAATATGCTGATACAAGAAGCAAGAAACCTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000355016.8
ENST00000675318.3
CDS CAA 72 bp TCTAATAATCTGGAAGTAAGGAAGGTTTCTTGCTTCTaGTATCAGCATATTCACTTTCTCTGTTGCCATATC +
Preference number: 6 (lower is better)
Translates to: SNNLEVRKVSCF*YQHIHFLCCHI
Trigger: GATATGGCAACAGAGAAAGTGAATATGCTGATACAAGAAGCAAGAAACCTTCCTTACTTCCAGATTATTAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000675318.3