Pregenerated sensors for H2BC8 (Homo sapiens)
Ensembl gene IDs: ENSG00000273802Ensembl transcript IDs: ENST00000541790.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGCCTCCCGAGTCTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTGGCCTCCCAAAGTGCTaGGATTACAAAATCGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: SLPSLWDDTRLPHARLIFGLPKC*DYKIGK Trigger: TTTTCCGATTTTGTAATCCCAGCACTTTGGGAGGCC...AAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAGACTCGGGAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR-3UTR GCA 90 bp | TTCCAGTGTTGCCCAGGCTGGAATTGCACTAGCGTATTCACATGTTCCTGCAGTTCGCCCAGGCTAGAATaGAAAAGCGCCATGTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: FQCCPGWNCTSVFTCSCSSPRLE*KSAMSF Trigger: AAAAGACATGGCGCTTTTGCATTCTAGCCTGGGCGA...ACTGCAGGAACATGTGAATACGCTAGTGCAATTCCAGCCTGGGCAACACTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGTGTTGCCCAGGCTGGAATTGCACTAGCGTATTCACATGTTCCTGCAGTAAATCTGTTAACTCCTaGGCTGAAGAAAGCCTCATG | + |
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Preference number: 2 (lower is better) Translates to: FQCCPGWNCTSVFTCSCSKSVNS*AEESLM Trigger: CATGAGGCTTTCTTCAGCTCAGGAGTTAACAGATTT...ACTGCAGGAACATGTGAATACGCTAGTGCAATTCCAGCCTGGGCAACACTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR TCA 72 bp | GTGATTCTCCTGCGGCAGCCTCCCGAGTCTCTGGGATaGCACGCGACTGCCCCACGCCCGGCTAATATTTGT | + |
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Preference number: 3 (lower is better) Translates to: VILLRQPPESLG*HATAPRPANIC Trigger: ACAAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAGACTCGGGAGGCTGCCGCAGGAGAATCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR-3UTR CAA 90 bp | CAATGCCCATGGTATTCCCTCCACAACAAACTCCACAAGAGTGCTCAGAAAAGTCTACCCTTTCCAGTGTaGCCCAGGCTGGAATTGCAC | + |
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Preference number: 3 (lower is better) Translates to: QCPWYSLHNKLHKSAQKSLPFPV*PRLELH Trigger: GTGCAATTCCAGCCTGGGCAACACTGGAAAGGGTAG...ACTTTTCTGAGCACTCTTGTGGAGTTTGTTGTGGAGGGAATACCATGGGCATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR GCA 72 bp | GAATGCAAAAGCGCCATGTCTTTTCACTGCAACCTTTaGTTGCTGGGTTTAAGTGATTCTCCTGCGGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: ECKSAMSFHCNL*LLGLSDSPAAA Trigger: GGCTGCCGCAGGAGAATCACTTAAACCCAGCAAGCAAAGGTTGCAGTGAAAAGACATGGCGCTTTTGCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR GCA 72 bp | GGACCCAAAGACTACTCTTCCTACCCTTTCCAGTGTTaGCCAGGCTGGAATTGCACTAGCGTATTCACATGT | + |
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Preference number: 3 (lower is better) Translates to: GPKDYSSYPFQC*PGWNCTSVFTC Trigger: ACATGTGAATACGCTAGTGCAATTCCAGCCTGGGCAACACTGGAAAGGGTAGGAAGAGTAGTCTTTGGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| 3UTR CCA 72 bp | GACTACTCTTCCTACCCTTTCCAGTGTTGCCCAGGCTaGAATTGCACTAGCGTATTCACATGTTCCTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: DYSSYPFQCCPG*NCTSVFTCSCS Trigger: ACTGCAGGAACATGTGAATACGCTAGTGCAATTCCAGCCTGGGCAACACTGGAAAGGGTAGGAAGAGTAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | CTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTGTATTTTTAGTAATGGGATTAGAGGCGTaGGCCACCGCGCACGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: LWDDTRLPHARLIFVFLVMGLEA*ATAHGG Trigger: TCCGCCGTGCGCGGTGGCTCACGCCTCTAATCCCAT...TACTAAAAATACAAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR GCA 90 bp | TTGCTGGGTTTAAGTGATTCTCCTGCGGCAGCCTCCCGAGTCTCTGGGATGACATCGCCCAGGATGGAGTaGAGTGGCGCGATCTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: LLGLSDSPAAASRVSGMTSPRME*SGAISD Trigger: ATCAGAGATCGCGCCACTGCACTCCATCCTGGGCGA...TGTCATCCCAGAGACTCGGGAGGCTGCCGCAGGAGAATCACTTAAACCCAGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | CAGGCAAATCTGTTAACTCCTGAGCTGAAGAAAGCCTCATGCATCGACCTCCCAATGGTCTCGACCTCCTaGCCTCGTGATCCGCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: QANLLTPELKKASCIDLPMVSTS*PRDPPV Trigger: GACGGGCGGATCACGAGGTCAGGAGGTCGAGACCAT...TGGGAGGTCGATGCATGAGGCTTTCTTCAGCTCAGGAGTTAACAGATTTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | AGCCTCCCGAGTCTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTAAATCTGTTAACTCCTaGGCTGAAGAAAGCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: SLPSLWDDTRLPHARLIFKSVNS*AEESLM Trigger: CATGAGGCTTTCTTCAGCTCAGGAGTTAACAGATTT...AAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAGACTCGGGAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | TGCCAATGCCCATGGTATTCCCTCCACAACAAACTCCACAAGAGTGCTCAGAAACCTCCCGGGTTCAAGTaGCTCTCCAGCCTCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CQCPWYSLHNKLHKSAQKPPGFK*LSSLSF Trigger: GAAGCTGAGGCTGGAGAGTCACTTGAACCCGGGAGG...TTTCTGAGCACTCTTGTGGAGTTTGTTGTGGAGGGAATACCATGGGCATTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | TGCCAATGCCCATGGTATTCCCTCCACAACAAACTCCACAAGAGTGCTCAGAAACAGTGGCGCGATCTCTaGTCACTGCAACCTCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: CQCPWYSLHNKLHKSAQKQWRDL*SLQPPP Trigger: AGGCGGAGGTTGCAGTGATCAGAGATCGCGCCACTG...TTTCTGAGCACTCTTGTGGAGTTTGTTGTGGAGGGAATACCATGGGCATTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR CCA 90 bp | CTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTGTATTTTTAGTACAGTGTTGCCCAGGCTaGAATTGCACTAGCGTATTC | + |
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Preference number: 4 (lower is better) Translates to: LWDDTRLPHARLIFVFLVQCCPG*NCTSVF Trigger: GAATACGCTAGTGCAATTCCAGCCTGGGCAACACTG...TACTAAAAATACAAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR GCA 90 bp | CTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTGTATTTTTAGTAGCCATGTCTTTTCACTaGAACCTTTGCTTGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LWDDTRLPHARLIFVFLVAMSFH*NLCLLG Trigger: ACCCAGCAAGCAAAGGTTGCAGTGAAAAGACATGGC...TACTAAAAATACAAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR GCA 90 bp | CTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTGTATTTTTAGTATCGCCCAGGCTAGAATaGAAAAGCGCCATGTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LWDDTRLPHARLIFVFLVSPRLE*KSAMSF Trigger: AAAAGACATGGCGCTTTTGCATTCTAGCCTGGGCGA...TACTAAAAATACAAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR CCA 90 bp | CAGGCAAATCTGTTAACTCCTGAGCTGAAGAAAGCCTCATGCATCGACCTCCCAGGCCTCCCAAAGTGCTaGGATTACAAAATCGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: QANLLTPELKKASCIDLPGLPKC*DYKIGK Trigger: TTTTCCGATTTTGTAATCCCAGCACTTTGGGAGGCC...TGGGAGGTCGATGCATGAGGCTTTCTTCAGCTCAGGAGTTAACAGATTTGCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR CCA 90 bp | CAGGCAAATCTGTTAACTCCTGAGCTGAAGAAAGCCTCATGCATCGACCTCCCACATTGCCAATGCCCATaGTATTCCCTCCACAACAAA | + |
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Preference number: 4 (lower is better) Translates to: QANLLTPELKKASCIDLPHCQCP*YSLHNK Trigger: TTTGTTGTGGAGGGAATACCATGGGCATTGGCAATG...TGGGAGGTCGATGCATGAGGCTTTCTTCAGCTCAGGAGTTAACAGATTTGCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR GCA 90 bp | TTCCAGTGTTGCCCAGGCTGGAATTGCACTAGCGTATTCACATGTTCCTGCAGTAGGATTACAGGATCTTaGCAACACAGAACAGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: FQCCPGWNCTSVFTCSCSRITGS*QHRTGV Trigger: TACTCCTGTTCTGTGTTGGCAAGATCCTGTAATCCT...ACTGCAGGAACATGTGAATACGCTAGTGCAATTCCAGCCTGGGCAACACTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR GCA 90 bp | ATTCCCTCCACAACAAACTCCACAAGAGTGCTCAGAAAAGTCAAACTTGTTATCACTTTACATTGCCAATaGCCATGGTATTCCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: IPSTTNSTRVLRKVKLVITLHCQ*PWYSLH Trigger: GTGGAGGGAATACCATGGGCATTGGCAATGTAAAGT...GATAACAAGTTTGACTTTTCTGAGCACTCTTGTGGAGTTTGTTGTGGAGGGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR TCA 90 bp | ATTCCCTCCACAACAAACTCCACAAGAGTGCTCAGAAAAGTCAAACTTGTTATCAAACTTGTTATCAGGTaGTCTTTAGGGACCCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: IPSTTNSTRVLRKVKLVIKLVIR*SLGTQR Trigger: TCTTTGGGTCCCTAAAGATCACCTGATAACAAGTTT...GATAACAAGTTTGACTTTTCTGAGCACTCTTGTGGAGTTTGTTGTGGAGGGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR CAA 90 bp | AGCCTCCCGAGTCTCTGGGATGACACGCGACTGCCCCACGCCCGGCTAATATTTCTACCCTTTCCAGTGTaGCCCAGGCTGGAATTGCAC | + |
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Preference number: 5 (lower is better) Translates to: SLPSLWDDTRLPHARLIFLPFPV*PRLELH Trigger: GTGCAATTCCAGCCTGGGCAACACTGGAAAGGGTAG...AAATATTAGCCGGGCGTGGGGCAGTCGCGTGTCATCCCAGAGACTCGGGAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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| CDS-3UTR CAA 90 bp | TTGCTGGGTTTAAGTGATTCTCCTGCGGCAGCCTCCCGAGTCTCTGGGATGACACACTGCAACCTTTGCTaGCTGGGTTTAAGTGATTCT | + |
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Preference number: 5 (lower is better) Translates to: LLGLSDSPAAASRVSGMTHCNLC*LGLSDS Trigger: AGAATCACTTAAACCCAGCAAGCAAAGGTTGCAGTG...TGTCATCCCAGAGACTCGGGAGGCTGCCGCAGGAGAATCACTTAAACCCAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541790.3 |
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