Pregenerated sensors for H2BC7 (Homo sapiens)
Ensembl gene IDs: ENSG00000277224Ensembl transcript IDs: ENST00000356530.5
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCTAGCCTTCTAACCAGCACTTGGGGTAAAACAAACATGCTACGGTTAAGTATATTACAACTCTATAGCTaGAAAAGTGGGTGGCTCTTA | + |
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Preference number: 2 (lower is better) Translates to: ASLLTSTWGKTNMLRLSILQLYS*KSGWLL Trigger: TAAGAGCCACCCACTTTTTCAGCTATAGAGTTGTAA...TATACTTAACCGTAGCATGTTTGTTTTACCCCAAGTGCTGGTTAGAAGGCTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| 3UTR-3UTR CAA 90 bp | TGCTTATCAGCACAATGGGCTAGCCTTCTAACCAGCACTTGGGGTAAAACAAACAAAGAGCCTTTGGGATaGGGTATGAAGACGTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: CLSAQWASLLTSTWGKTNKEPLG*GMKTLE Trigger: TTCTAACGTCTTCATACCCAATCCCAAAGGCTCTTT...GTTTGTTTTACCCCAAGTGCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| 3UTR-3UTR CAA 90 bp | GCTAGCCTTCTAACCAGCACTTGGGGTAAAACAAACATGCTACGGTTAAGTATAATAAAACCAAACCTGTaGGTGGTAAACACGGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ASLLTSTWGKTNMLRLSIIKPNL*VVNTEN Trigger: ATTTTCCGTGTTTACCACCAACAGGTTTGGTTTTAT...TATACTTAACCGTAGCATGTTTGTTTTACCCCAAGTGCTGGTTAGAAGGCTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CCA 90 bp | ACACAGCAGCAACCCCCTCAAATGAGGATAAAACCAAACCTGTTGGTGGTAAACTGCTTATCAGCACAATaGGCTAGCCTTCTAACCAGC | + |
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Preference number: 4 (lower is better) Translates to: TQQQPPQMRIKPNLLVVNCLSAQ*ASLLTS Trigger: GCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCA...GTTTACCACCAACAGGTTTGGTTTTATCCTCATTTGAGGGGGTTGCTGCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CCA 90 bp | CTGTGGTCTAGACCTACACAGCAGCAACCCCCTCAAATGAGGATAAAACCAAACCTCATTACTCCCAAATaGTATTTTGCCAGTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LWSRPTQQQPPQMRIKPNLITPK*YFASGQ Trigger: TTGGCCACTGGCAAAATACCATTTGGGAGTAATGAG...GTTTGGTTTTATCCTCATTTGAGGGGGTTGCTGCTGTGTAGGTCTAGACCACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR TCA 90 bp | AGAAAAATGTGCTTATCAGCACAATGGGCTAGCCTTCTAACCAGCACTTGGGGTCTTATGAAACCAATTTaGCAAGGGACACATCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: RKMCLSAQWASLLTSTWGLMKPI*QGTHHS Trigger: GCTGTGATGTGTCCCTTGTCAAATTGGTTTCATAAG...ACCCCAAGTGCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCACATTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CCA 90 bp | GCTAGCCTTCTAACCAGCACTTGGGGTAAAACAAACATGCTACGGTTAAGTATACAGTCAAAAGAACTGTaGTCTAGACCTACACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ASLLTSTWGKTNMLRLSIQSKEL*SRPTQQ Trigger: CTGCTGTGTAGGTCTAGACCACAGTTCTTTTGACTG...TATACTTAACCGTAGCATGTTTGTTTTACCCCAAGTGCTGGTTAGAAGGCTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CCA 90 bp | TTTTCCTTCAACCAGTCAAAAGAACTGTGGTCTAGACCTACACAGCAGCAACCCCTTCTAACCAGCACTTaGGGTAAAACAAACATGCTA | + |
|
Preference number: 4 (lower is better) Translates to: FSFNQSKELWSRPTQQQPLLTST*GKTNML Trigger: TAGCATGTTTGTTTTACCCCAAGTGCTGGTTAGAAG...GGGTTGCTGCTGTGTAGGTCTAGACCACAGTTCTTTTGACTGGTTGAAGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR TCA 90 bp | GCTGCGATGACTAAACCGGAATTAAGGAAGACATTCCTTTCCCTCACACTATGTTTACAACTCTATAGCTaGAAAAGTGGGTGGCTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: AAMTKPELRKTFLSLTLCLQLYS*KSGWLL Trigger: TAAGAGCCACCCACTTTTTCAGCTATAGAGTTGTAA...ACATAGTGTGAGGGAAAGGAATGTCTTCCTTAATTCCGGTTTAGTCATCGCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR TCA 90 bp | AGAAAAATGTGCTTATCAGCACAATGGGCTAGCCTTCTAACCAGCACTTGGGGTAACCAAGAACAATGTTaGTTATTAGTGCTGCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: RKMCLSAQWASLLTSTWGNQEQC*LLVLHP Trigger: TGGATGCAGCACTAATAATCAACATTGTTCTTGGTT...ACCCCAAGTGCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCACATTTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CAA 90 bp | TTTTCCTTCAACCAGTCAAAAGAACTGTGGTCTAGACCTACACAGCAGCAACCCAAAGAGCCTTTGGGATaGGGTATGAAGACGTTAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FSFNQSKELWSRPTQQQPKEPLG*GMKTLE Trigger: TTCTAACGTCTTCATACCCAATCCCAAAGGCTCTTT...GGGTTGCTGCTGTGTAGGTCTAGACCACAGTTCTTTTGACTGGTTGAAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CAA 90 bp | AGAAAAATGTGCTTATCAGCACAATGGGCTAGCCTTCTAACCAGCACTTGGGGTCTCCCAAATGGTATTTaGCCAGTGGCCAAATTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: RKMCLSAQWASLLTSTWGLPNGI*PVAKFS Trigger: AGAAAATTTGGCCACTGGCAAAATACCATTTGGGAG...ACCCCAAGTGCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCACATTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CAA 90 bp | AGAAAAATGTGCTTATCAGCACAATGGGCTAGCCTTCTAACCAGCACTTGGGGTATAAAACCAAACCTGTaGGTGGTAAACACGGAAAAT | + |
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Preference number: 5 (lower is better) Translates to: RKMCLSAQWASLLTSTWGIKPNL*VVNTEN Trigger: ATTTTCCGTGTTTACCACCAACAGGTTTGGTTTTAT...ACCCCAAGTGCTGGTTAGAAGGCTAGCCCATTGTGCTGATAAGCACATTTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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| CDS-3UTR CAA 90 bp | GCTAGCCTTCTAACCAGCACTTGGGGTAAAACAAACATGCTACGGTTAAGTATATCTTATGAAACCAATTaGACAAGGGACACATCACAG | + |
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Preference number: 5 (lower is better) Translates to: ASLLTSTWGKTNMLRLSISYETN*TRDTSQ Trigger: CTGTGATGTGTCCCTTGTCAAATTGGTTTCATAAGA...TATACTTAACCGTAGCATGTTTGTTTTACCCCAAGTGCTGGTTAGAAGGCTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000356530.5 |
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