Pregenerated sensors for H2BC4 (Homo sapiens)
Ensembl gene IDs: ENSG00000180596Ensembl transcript IDs: ENST00000314332.5, ENST00000396984.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCTATATTCTAATACCCCTCCGCCGCCAAATAAAATTTGGCGTCTGGCCACAGCTTTTAGTGGGTATCTaGGTGGCTCTTAAAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: SYILIPLRRQIKFGVWPQLLVGI*VALKRA Trigger: GGCTCTTTTAAGAGCCACCCAGATACCCACTAAAAG...CTGTGGCCAGACGCCAAATTTTATTTGGCGGCGGAGGGGTATTAGAATATAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000396984.1 |
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| CDS-3UTR CCA 90 bp | CCGCCGCCAAATAAAATTTGGCGTCTGGCCACAGCTCTTTTAGTGGGTATCTGGCTTTTAGTGGGTATCTaGGTGGCTCTTAAAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: PPPNKIWRLATALLVGIWLLVGI*VALKRA Trigger: GGCTCTTTTAAGAGCCACCCAGATACCCACTAAAAG...CCAGATACCCACTAAAAGAGCTGTGGCCAGACGCCAAATTTTATTTGGCGGCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000396984.1 |
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| CDS-3UTR CCA 90 bp | ATCACTCATTTTCATTGGTTTATTTGCAAGATGAAACAGTGTCCAGCAGTGACGGCTGTTGTCTCCCCTTaGAATGTTTACTTGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: ITHFHWFICKMKQCPAVTAVVSP*NVYLEL Trigger: CAGCTCCAAGTAAACATTCCAAGGGGAGACAACAGC...CGTCACTGCTGGACACTGTTTCATCTTGCAAATAAACCAATGAAAATGAGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000314332.5 |
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| CDS-3UTR CAA 90 bp | TATATTCTAATACCCCTCCGCCGCCAAATAAAATTTGGCGTCTGGCCACAGCTCTCTAAGCTGCAACACTaGTCCCCACCCCTCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: YILIPLRRQIKFGVWPQLSKLQH*SPPLSS Trigger: ACTGGAGAGGGGTGGGGACAAGTGTTGCAGCTTAGA...GAGCTGTGGCCAGACGCCAAATTTTATTTGGCGGCGGAGGGGTATTAGAATATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000396984.1 |
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| CDS-3UTR CAA 90 bp | AAAGAGCTAATTTTTCTCAGCCAGGTGTTCATTTGTCCTTCTTTGATTGTTCAAAGCTGTTGTCTCCCCTaGGAATGTTTACTTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: KELIFLSQVFICPSLIVQSCCLP*ECLLGA Trigger: AGCTCCAAGTAAACATTCCAAGGGGAGACAACAGCT...TTGAACAATCAAAGAAGGACAAATGAACACCTGGCTGAGAAAAATTAGCTCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000314332.5 |
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| CDS-3UTR CAA 90 bp | AAAGAGCTAATTTTTCTCAGCCAGGTGTTCATTTGTCCTTCTTTGATTGTTCAACAGCCAGGTGTTCATTaGTCCTTCTTTGATTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: KELIFLSQVFICPSLIVQQPGVH*SFFDCS Trigger: TGAACAATCAAAGAAGGACAAATGAACACCTGGCTG...TTGAACAATCAAAGAAGGACAAATGAACACCTGGCTGAGAAAAATTAGCTCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000314332.5 |
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