RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H1-6 (Homo sapiens)

Ensembl gene IDs: ENSG00000187475

Ensembl transcript IDs: ENST00000338379.6

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CTCGGTGATCAACTTGGACACAGAGAGGTTCGGCACTTTGCGACTTaGACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTTCTTGGTTGG +
Preference number: 5 (lower is better)
Translates to: LGDQLGHREVRHFAT*TYQASRLPPSLLGW
Trigger: CCAACCAAGAAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CCA 90 bp ACTTGCACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTTCTTGGTTaGAAGTTTCTCCATAGCGGCTACACCAGCACTGGCAGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: TCTYQASRLPPSLLG*KFLHSGYTSTGRSC
Trigger: GCAGCTTCTGCCAGTGCTGGTGTAGCCGCTATGGAGAAACTTCCAACCAAGAAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS TCA 90 bp CCAAAGACATACCTACTCGTTCCTGTGACACTGAAAGGGCCTCGGTaGTCAACTTGGACACAGAGAGGTTCGGCACTTTGCGACTTGCAC +
Preference number: 5 (lower is better)
Translates to: PKTYLLVPVTLKGPR*STWTQRGSALCDLH
Trigger: GTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAGGCCCTTTCAGTGTCACAGGAACGAGTAGGTATGTCTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS GCA 90 bp TGGGTCAATTTTGACTTCGAAGCCCTTGCCTTCACTGGGCTCTTCTaGTGTTGCTTACCCTTGGCTCCTTTAGCCTTTCTCCCGCTCCTA +
Preference number: 5 (lower is better)
Translates to: WVNFDFEALAFTGLF*CCLPLAPLAFLPLL
Trigger: TAGGAGCGGGAGAAAGGCTAAAGGAGCCAAGGGTAAGCAACAGCAGAAGAGCCCAGTGAAGGCAAGGGCTTCGAAGTCAAAATTGACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS GCA 90 bp GGTTGGAAGTTTCTCCATAGCGGCTACACCAGCACTGGCAGAAGCTaGAGGCACGGTTTCAGACATAACAACAGAGAAACGCAAGATGTA +
Preference number: 5 (lower is better)
Translates to: GWKFLHSGYTSTGRS*RHGFRHNNRETQDV
Trigger: TACATCTTGCGTTTCTCTGTTGTTATGTCTGAAACCGTGCCTGCAGCTTCTGCCAGTGCTGGTGTAGCCGCTATGGAGAAACTTCCAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS GCA 90 bp AATTTTGACTTCGAAGCCCTTGCCTTCACTGGGCTCTTCTGCTGTTaGTTACCCTTGGCTCCTTTAGCCTTTCTCCCGCTCCTAACAGTT +
Preference number: 5 (lower is better)
Translates to: NFDFEALAFTGLFCC*LPLAPLAFLPLLTV
Trigger: AACTGTTAGGAGCGGGAGAAAGGCTAAAGGAGCCAAGGGTAAGCAACAGCAGAAGAGCCCAGTGAAGGCAAGGGCTTCGAAGTCAAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp GAAAGGGCCTCGGTGATCAACTTGGACACAGAGAGGTTCGGCACTTaGCGACTTGCACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTTC +
Preference number: 6 (lower is better)
Translates to: ERASVINLDTERFGT*RLALIKPAGFLPRF
Trigger: GAAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAGGCCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS GCA 72 bp CAACTTGGACACAGAGAGGTTCGGCACTTTGCGACTTaGACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTT +
Preference number: 6 (lower is better)
Translates to: QLGHREVRHFAT*TYQASRLPPSL
Trigger: AAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp GCACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTTCTaGGTTGGAAGTTTCTCCATAGCGGCTACACCAGCA +
Preference number: 6 (lower is better)
Translates to: ALIKPAGFLPRF*VGSFSIAATPA
Trigger: TGCTGGTGTAGCCGCTATGGAGAAACTTCCAACCAAGAAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp TCAACTTGGACACAGAGAGGTTCGGCACTTTGCGACTaGCACTTATCAAGCCAGCCGGCTTCCTCCCTCGCT +
Preference number: 6 (lower is better)
Translates to: STWTQRGSALCD*HLSSQPASSLA
Trigger: AGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp TTGCGACTTGCACTTATCAAGCCAGCCGGCTTCCTCCCTCGCTTCTaGGTTGGAAGTTTCTCCATAGCGGCTACACCAGCACTGGCAGAA +
Preference number: 6 (lower is better)
Translates to: LRLALIKPAGFLPRF*VGSFSIAATPALAE
Trigger: TTCTGCCAGTGCTGGTGTAGCCGCTATGGAGAAACTTCCAACCAAGAAGCGAGGGAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp TCGGTGATCAACTTGGACACAGAGAGGTTCGGCACTTaGCGACTTGCACTTATCAAGCCAGCCGGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: SVINLDTERFGT*RLALIKPAGFL
Trigger: GAGGAAGCCGGCTGGCTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp CGTTCCTGTGACACTGAAAGGGCCTCGGTGATCAACTaGGACACAGAGAGGTTCGGCACTTTGCGACTTGCA +
Preference number: 6 (lower is better)
Translates to: RSCDTERASVIN*DTERFGTLRLA
Trigger: TGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAGGCCCTTTCAGTGTCACAGGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS TCA 72 bp TACCTACTCGTTCCTGTGACACTGAAAGGGCCTCGGTaGTCAACTTGGACACAGAGAGGTTCGGCACTTTGC +
Preference number: 6 (lower is better)
Translates to: YLLVPVTLKGPR*STWTQRGSALC
Trigger: GCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAGGCCCTTTCAGTGTCACAGGAACGAGTAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp CTTGCCTTCACTGGGCTCTTCTGCTGTTGCTTACCCTaGGCTCCTTTAGCCTTTCTCCCGCTCCTAACAGTT +
Preference number: 6 (lower is better)
Translates to: LAFTGLFCCCLP*APLAFLPLLTV
Trigger: AACTGTTAGGAGCGGGAGAAAGGCTAAAGGAGCCAAGGGTAAGCAACAGCAGAAGAGCCCAGTGAAGGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp TTCGAAGCCCTTGCCTTCACTGGGCTCTTCTGCTGTTGCTTACCCTaGGCTCCTTTAGCCTTTCTCCCGCTCCTAACAGTTTTAGGAGTT +
Preference number: 6 (lower is better)
Translates to: FEALAFTGLFCCCLP*APLAFLPLLTVLGV
Trigger: AACTCCTAAAACTGTTAGGAGCGGGAGAAAGGCTAAAGGAGCCAAGGGTAAGCAACAGCAGAAGAGCCCAGTGAAGGCAAGGGCTTCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS GCA 72 bp TTTCTCCATAGCGGCTACACCAGCACTGGCAGAAGCTaGAGGCACGGTTTCAGACATAACAACAGAGAAACG +
Preference number: 6 (lower is better)
Translates to: FLHSGYTSTGRS*RHGFRHNNRET
Trigger: CGTTTCTCTGTTGTTATGTCTGAAACCGTGCCTGCAGCTTCTGCCAGTGCTGGTGTAGCCGCTATGGAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp ATACCTACTCGTTCCTGTGACACTGAAAGGGCCTCGGTGATCAACTaGGACACAGAGAGGTTCGGCACTTTGCGACTTGCACTTATCAAG +
Preference number: 6 (lower is better)
Translates to: IPTRSCDTERASVIN*DTERFGTLRLALIK
Trigger: CTTGATAAGTGCAAGTCGCAAAGTGCCGAACCTCTCTGTGTCCAAGTTGATCACCGAGGCCCTTTCAGTGTCACAGGAACGAGTAGGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 72 bp CTTCATGATGTTGGGTCAATTTTGACTTCGAAGCCCTaGCCTTCACTGGGCTCTTCTGCTGTTGCTTACCCT +
Preference number: 6 (lower is better)
Translates to: LHDVGSILTSKP*PSLGSSAVAYP
Trigger: AGGGTAAGCAACAGCAGAAGAGCCCAGTGAAGGCAAGGGCTTCGAAGTCAAAATTGACCCAACATCATGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp CTCGGCTTCTTGGCTCTCTTATTGGTTTTAGCAGTCTTTGGTGACTaGGAGTCCCTGGATAAAACCAGCTTCTTGGTCTTGGCAGAAACT +
Preference number: 6 (lower is better)
Translates to: LGFLALLLVLAVFGD*ESLDKTSFLVLAET
Trigger: AGTTTCTGCCAAGACCAAGAAGCTGGTTTTATCCAGGGACTCCAAGTCACCAAAGACTGCTAAAACCAATAAGAGAGCCAAGAAGCCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp GTCTTTGGTGACTTGGAGTCCCTGGATAAAACCAGCTTCTTGGTCTaGGCAGAAACTGACTTTTTAGCCTTGCTTCTGGTAGATTTAGGA +
Preference number: 6 (lower is better)
Translates to: VFGDLESLDKTSFLV*AETDFLALLLVDLG
Trigger: TCCTAAATCTACCAGAAGCAAGGCTAAAAAGTCAGTTTCTGCCAAGACCAAGAAGCTGGTTTTATCCAGGGACTCCAAGTCACCAAAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338379.6
CDS CAA 90 bp TTAGCAGTCTTTGGTGACTTGGAGTCCCTGGATAAAACCAGCTTCTaGGTCTTGGCAGAAACTGACTTTTTAGCCTTGCTTCTGGTAGAT +
Preference number: 6 (lower is better)
Translates to: LAVFGDLESLDKTSF*VLAETDFLALLLVD
Trigger: ATCTACCAGAAGCAAGGCTAAAAAGTCAGTTTCTGCCAAGACCAAGAAGCTGGTTTTATCCAGGGACTCCAAGTCACCAAAGACTGCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000338379.6