RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for H1-5 (Homo sapiens)

Ensembl gene IDs: ENSG00000184357

Ensembl transcript IDs: ENST00000331442.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTTCTTAGTTGCCTTCTTCTTAGCCGGGGATTTCTCCACCGGCGCTaGGGTGGCTGTCTCGGCAGGAGCGGTTTCCGACATGGTGGCAAG +
Preference number: 5 (lower is better)
Translates to: LLSCLLLSRGFLHRR*GGCLGRSGFRHGGK
Trigger: CTTGCCACCATGTCGGAAACCGCTCCTGCCGAGACAGCCACCCCAGCGCCGGTGGAGAAATCCCCGGCTAAGAAGAAGGCAACTAAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp TTGGTGATCAGCTCTGAGACTGGGGGCCCCGTCGCTTaGCGCTTAGCAGCGCCGGCGCCGGCAGCCTTCTTA +
Preference number: 6 (lower is better)
Translates to: LVISSETGGPVA*RLAAPAPAAFL
Trigger: TAAGAAGGCTGCCGGCGCCGGCGCTGCTAAGCGCAAAGCGACGGGGCCCCCAGTCTCAGAGCTGATCACCAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CCA 72 bp TGCCTTCTTCTTAGCCGGGGATTTCTCCACCGGCGCTaGGGTGGCTGTCTCGGCAGGAGCGGTTTCCGACAT +
Preference number: 6 (lower is better)
Translates to: CLLLSRGFLHRR*GGCLGRSGFRH
Trigger: ATGTCGGAAACCGCTCCTGCCGAGACAGCCACCCCAGCGCCGGTGGAGAAATCCCCGGCTAAGAAGAAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 90 bp GGCTTGGCAGGACTCTTGGTTGCCTTTTTCGGTTTGGCAGCGGCCTaGGCCTTCTTAGGGCTCTTCGCCACCTTTTTGACGCCAGCCGCC +
Preference number: 6 (lower is better)
Translates to: GLAGLLVAFFGLAAA*AFLGLFATFLTPAA
Trigger: GGCGGCTGGCGTCAAAAAGGTGGCGAAGAGCCCTAAGAAGGCCAAGGCCGCTGCCAAACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp GCCTTCGGCTTAACTGCCTTGGGCTTGGCAGGACTCTaGGTTGCCTTTTTCGGTTTGGCAGCGGCCTTGGCC +
Preference number: 6 (lower is better)
Translates to: AFGLTALGLAGL*VAFFGLAAALA
Trigger: GGCCAAGGCCGCTGCCAAACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 90 bp TTAGCGGCTTTGGGCTTTGCCGCCTTCGGCTTAACTGCCTTGGGCTaGGCAGGACTCTTGGTTGCCTTTTTCGGTTTGGCAGCGGCCTTG +
Preference number: 6 (lower is better)
Translates to: LAALGFAAFGLTALG*AGLLVAFFGLAAAL
Trigger: CAAGGCCGCTGCCAAACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS GCA 72 bp GGCAGCCGCCTTCTTGGCCTTTGCAGCTTTAGGTTTTaGTGCTTTGGGCTTAGCGGCTTTGGGCTTTGCCGC +
Preference number: 6 (lower is better)
Translates to: GSRLLGLCSFRF*CFGLSGFGLCR
Trigger: GCGGCAAAGCCCAAAGCCGCTAAGCCCAAAGCAGCAAAACCTAAAGCTGCAAAGGCCAAGAAGGCGGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp GCGGCTTTGGGCTTTGCCGCCTTCGGCTTAACTGCCTaGGGCTTGGCAGGACTCTTGGTTGCCTTTTTCGGT +
Preference number: 6 (lower is better)
Translates to: AALGFAAFGLTA*GLAGLLVAFFG
Trigger: ACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 90 bp TTGGCAGCCGCCTTCTTGGCCTTTGCAGCTTTAGGTTTTGCTGCTTaGGGCTTAGCGGCTTTGGGCTTTGCCGCCTTCGGCTTAACTGCC +
Preference number: 6 (lower is better)
Translates to: LAAAFLAFAALGFAA*GLAALGFAAFGLTA
Trigger: GGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAAGCCCAAAGCAGCAAAACCTAAAGCTGCAAAGGCCAAGAAGGCGGCTGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS GCA 72 bp CGGCTTAACTGCCTTGGGCTTGGCAGGACTCTTGGTTaGCTTTTTCGGTTTGGCAGCGGCCTTGGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: RLNCLGLGRTLG*LFRFGSGLGLL
Trigger: AAGAAGGCCAAGGCCGCTGCCAAACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp GCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTaGGGCTTTGCCGCCTTCGGCTTAACTGCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: AALGFAALGLAA*GFAAFGLTALG
Trigger: GCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAAGCCCAAAGCAGCAAAACCTAAAGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 90 bp TTGGCCTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTaGGGCTTTGCCGCCTTCGGCTTAACTGCCTTGGGCTTGGCAGGA +
Preference number: 6 (lower is better)
Translates to: LAFAALGFAALGLAA*GFAAFGLTALGLAG
Trigger: TCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAAGCCCAAAGCAGCAAAACCTAAAGCTGCAAAGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS GCA 72 bp CTTAGCGGCTTTGGGCTTTGCCGCCTTCGGCTTAACTaGCTTGGGCTTGGCAGGACTCTTGGTTGCCTTTTT +
Preference number: 6 (lower is better)
Translates to: LSGFGLCRLRLN*LGLGRTLGCLF
Trigger: AAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAAAGCCGCTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp GGACTCTTGGTTGCCTTTTTCGGTTTGGCAGCGGCCTaGGCCTTCTTAGGGCTCTTCGCCACCTTTTTGACG +
Preference number: 6 (lower is better)
Translates to: GLLVAFFGLAAA*AFLGLFATFLT
Trigger: CGTCAAAAAGGTGGCGAAGAGCCCTAAGAAGGCCAAGGCCGCTGCCAAACCGAAAAAGGCAACCAAGAGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000331442.5
CDS CAA 72 bp TTGGGCTTTGCCGCCTTCGGCTTAACTGCCTTGGGCTaGGCAGGACTCTTGGTTGCCTTTTTCGGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: LGFAAFGLTALG*AGLLVAFFGLA
Trigger: TGCCAAACCGAAAAAGGCAACCAAGAGTCCTGCCAAGCCCAAGGCAGTTAAGCCGAAGGCGGCAAAGCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000331442.5