Pregenerated sensors for H1-3 (Homo sapiens)

Ensembl gene IDs: ENSG00000124575

Ensembl transcript IDs: ENST00000244534.7

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	GTAACCTTCGGCTTCCCCGACTTAGGCTTGGCCGCCTaGGGCTTAGGGGCTTTGGCCTTAGCTGGACTCTTG	+
Preference number: 6 (lower is better) Translates to: VTFGFPDLGLAA*GLGALALAGLL Trigger: CAAGAGTCCAGCTAAGGCCAAAGCCCCTAAGCCCAAGGCGGCCAAGCCTAAGTCGGGGAAGCCGAAGGTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000244534.7
CDS CAA 72 bp	TTGGTGATAAGCTCAGATACTGGGGGTCCGGATGCTTaGCGTTTCCCAGCAGTTGCGCCTGCCTTCTTCGCC	+
Preference number: 6 (lower is better) Translates to: LVISSDTGGPDA*RFPAVAPAFFA Trigger: GGCGAAGAAGGCAGGCGCAACTGCTGGGAAACGCAAAGCATCCGGACCCCCAGTATCTGAGCTTATCACCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000244534.7
CDS GCA 72 bp	TACTGGGGGTCCGGATGCTTTGCGTTTCCCAGCAGTTaGGCCTGCCTTCTTCGCCTTTTTCTTCACAGGTGT	+
Preference number: 6 (lower is better) Translates to: YWGSGCFAFPSS*ACLLRLFLHRC Trigger: ACACCTGTGAAGAAAAAGGCGAAGAAGGCAGGCGCAACTGCTGGGAAACGCAAAGCATCCGGACCCCCAGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000244534.7
CDS CAA 72 bp	ATACTGGGGGTCCGGATGCTTTGCGTTTCCCAGCAGTaGCGCCTGCCTTCTTCGCCTTTTTCTTCACAGGTG	+
Preference number: 6 (lower is better) Translates to: ILGVRMLCVSQQ*RLPSSPFSSQV Trigger: CACCTGTGAAGAAAAAGGCGAAGAAGGCAGGCGCAACTGCTGGGAAACGCAAAGCATCCGGACCCCCAGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000244534.7

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu