Pregenerated sensors for GTF3A (Homo sapiens)
Ensembl gene IDs: ENSG00000122034Ensembl transcript IDs: ENST00000381140.10, ENST00000419181.5, ENST00000435781.5, ENST00000438571.5, ENST00000466776.5, ENST00000470606.5, ENST00000493903.1
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATGGTCTGATCAATGACTGCTTAGTAAATCCCGAGCCCCTGCCATaGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTA | + |
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Preference number: 1 (lower is better) Translates to: NGLINDCLVNPEPLP*ISRSQNEGPTTSCL Trigger: TAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTCATTGATCAGACCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| 3UTR-3UTR CCA 90 bp | AAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTGGGCGGCTTTCCTCATaGAAGGAGAGGATATGGCTT | + |
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Preference number: 2 (lower is better) Translates to: KAVQFLAKGKYCNCREHLGRLSS*KERIWL Trigger: AAGCCATATCCTCTCCTTCCATGAGGAAAGCCGCCC...AAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTAAGAAAAGCATGCTCTaGGAGAAAGCTCGCTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: KAVQFLAKGKYCNCREHLKKSML*EKARSL Trigger: CAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTT...AAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTTTCCACACAGTTGGGTaGCTCTCCGTTTTGACACAA | + |
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Preference number: 2 (lower is better) Translates to: KAVQFLAKGKYCNCREHLFHTVG*LSVLTQ Trigger: TTGTGTCAAAACGGAGAGTCACCCAACTGTGTGGAA...AAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| 3UTR-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTAAGAAAAGCATGCTCTaGGAGAAAGCTCGCTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: NKEKHALRESSLLGLQSFKKSML*EKARSL Trigger: CAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| 3UTR CCA 72 bp | ATCAATGACTGCTTAGTAAATCCCGAGCCCCTGCCATaGATATCAAGGTCGCAGAACGAAGGTCCTACAACT | + |
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Preference number: 3 (lower is better) Translates to: INDCLVNPEPLP*ISRSQNEGPTT Trigger: AGTTGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTCATTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| 3UTR-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGAGAAAGCTCGCTCCTaGGTCTGCAGTCCTTTAAAC | + |
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Preference number: 3 (lower is better) Translates to: NKEKHALRESSLLGLQSFEKARS*VCSPLN Trigger: GTTTAAAGGACTGCAGACCAAGGAGCGAGCTTTCTC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| 3UTR-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTACTGTCGAGAGCATCTaGTCTTCCACACAGTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: NKEKHALRESSLLGLQSFTVESI*SSTQLG Trigger: ACCCAACTGTGTGGAAGACAAGATGCTCTCGACAGT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| 3UTR GCA 72 bp | AACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTaGAACTGTCGAGAGCATCTTGTCTTCCACACAGTT | + |
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Preference number: 3 (lower is better) Translates to: NKAVQFLAKGKY*NCREHLVFHTV Trigger: AACTGTGTGGAAGACAAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR CCA 90 bp | GTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGTCCTACATGGCCACGACTGCAGTaGCTACCCCGGGGCCACGCG | + |
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Preference number: 4 (lower is better) Translates to: VNPEPLPWISRSQNEGPTWPRLQ*LPRGHA Trigger: CGCGTGGCCCCGGGGTAGCCACTGCAGTCGTGGCCA...TGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | GATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCTGGCCCTGGCCACGACTaGAGTGGCTACCCCGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: DIKVAERRSYNFLSTSSAGPGHD*SGYPGA Trigger: GGCCCCGGGGTAGCCACTGCAGTCGTGGCCAGGGCC...AGCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR CCA 90 bp | ATCAATGACTGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGCGGGGCCTGCGGCCCTaGCCACGACTGCAGTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: INDCLVNPEPLPWISRSQRGLRP*PRLQWL Trigger: TAGCCACTGCAGTCGTGGCCAGGGCCGCAGGCCCCG...CTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTCATTGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCCCACGGCTCCCTGCTaGACCTTCGCGCGACGCCGG | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFPTAPC*TFARRR Trigger: CCGGCGTCGCGCGAAGGTTCAGCAGGGAGCCGTGGG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTACGTGCCGAGACACGTaGCGGGAACCGGCGCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFTCRDT*REPARP Trigger: CGGGCGCGCCGGTTCCCGGCACGTGTCTCGGCACGT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAACGTGCCGAGACACGTaGCGGGAACCGGCGCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRTCRDT*REPARP Trigger: CGGGCGCGCCGGTTCCCGGCACGTGTCTCGGCACGT...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | TGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGTCTCACCTCCCCCGTGTaGTTGCACAGGTGCGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: CLVNPEPLPWISRSQNEGLTSPV*LHRCAS Trigger: TGACGCGCACCTGTGCAAGCACACGGGGGAGGTGAG...ACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCGGCGGGGTCGGAGCTaGGCTCTCGCCGGCTGCAAT | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFRRGRS*ALAGCN Trigger: ATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR TCA 90 bp | GGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCCAGGGAAGGAGCAGATaGACCTCCTGGGAAGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: GYQGRRTKVLQLPVYFLSQGRSR*TSWEAR Trigger: CCGCGCTTCCCAGGAGGTTCATCTGCTCCTTCCCTG...GCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR TCA 90 bp | ATCAATGACTGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGCCTGGATGTCAAAGCTaGACGCGCTGCACAGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: INDCLVNPEPLPWISRSQPGCQS*TRCTAG Trigger: CCCCGCTGTGCAGCGCGTTCAGCTTTGACATCCAGG...CTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTCATTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCAGGGCCAGGCGCGCTaGCACGTGCCGAGACACGTG | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFQGQAR*HVPRHV Trigger: CACGTGTCTCGGCACGTGGCAGCGCGCCTGGCCCTG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | GGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCCCTCCCCCGTGTGCTTaGACAGGTGCGCGTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: GYQGRRTKVLQLPVYFLSPPPCA*TGARQA Trigger: AGCTTGACGCGCACCTGTGCAAGCACACGGGGGAGG...GCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR TCA 90 bp | GATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCTTCTCGCCGGCTGCAATaGACGCGTCGGCGATGGTCA | + |
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Preference number: 4 (lower is better) Translates to: DIKVAERRSYNFLSTSSASRRLQ*TRRRWS Trigger: TGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGA...AGCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTAGGCGCGCTGCCACGTaGCGAGACACGTGCCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFRRAAT*RDTCRE Trigger: TTCCCGGCACGTGTCTCGGCACGTGGCAGCGCGCCT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAAGGCGCGCTGCCACGTaGCGAGACACGTGCCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRRRAAT*RDTCRE Trigger: TTCCCGGCACGTGTCTCGGCACGTGGCAGCGCGCCT...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR TCA 90 bp | TTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTGTCTTCCACACATCTCGCCGGCTGCAATaGACGCGTCGGCGATGGTCA | + |
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Preference number: 4 (lower is better) Translates to: FLAKGKYCNCREHLVFHTSRRLQ*TRRRWS Trigger: TGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGA...TGTGTGGAAGACAAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR CCA 90 bp | GAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTAGGCTTTGCTGTAATTaGCGCTGCAGTCAGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: EPLPWISRSQNEGPTTSCRLCCN*RCSQGR Trigger: CCTTCCCTGACTGCAGCGCCAATTACAGCAAAGCCT...ACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR CCA 90 bp | GTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGTCCTACATCCTTCCCCAAGTCCTaGATGTCAAAGCTGAACGCG | + |
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Preference number: 4 (lower is better) Translates to: VNPEPLPWISRSQNEGPTSFPKS*MSKLNA Trigger: CGCGTTCAGCTTTGACATCCAGGACTTGGGGAAGGA...TGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR CCA 90 bp | ATCAATGACTGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGCCCGAGCCCCTGCCATaGATATCAAGGTCGCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: INDCLVNPEPLPWISRSQPEPLP*ISRSQN Trigger: GTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGG...CTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTCATTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTCTCGCCGGCTGCAATaGACGCGTCGGCGATGGTCA | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFSRRLQ*TRRRWS Trigger: TGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCAGGGAAGGAGCAGATaGACCTCCTGGGAAGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFQGRSR*TSWEAR Trigger: CCGCGCTTCCCAGGAGGTTCATCTGCTCCTTCCCTG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR TCA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGACAGGGAAGGAGCAGATaGACCTCCTGGGAAGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRQGRSR*TSWEAR Trigger: CCGCGCTTCCCAGGAGGTTCATCTGCTCCTTCCCTG...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | GATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCTGTGTGCTTGCACAGGTaGGCGTCAAGCTTCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: DIKVAERRSYNFLSTSSAVCLHR*ASSFQA Trigger: AGCCTGGAAGCTTGACGCGCACCTGTGCAAGCACAC...AGCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | TTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTGTCTTCCACACATCTCCCCCGTGTGCTTaGACAGGTGCGCGTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: FLAKGKYCNCREHLVFHTSPPCA*TGARQA Trigger: AGCTTGACGCGCACCTGTGCAAGCACACGGGGGAGA...TGTGTGGAAGACAAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGGTCTCTCCCCCGTGTaGTTGCACAGGTGCGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFGLSPV*LHRCAS Trigger: TGACGCGCACCTGTGCAAGCACACGGGGGAGAGACC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTCTCCCCCGTGTGCTTaGACAGGTGCGCGTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFSPPCA*TGARQA Trigger: AGCTTGACGCGCACCTGTGCAAGCACACGGGGGAGA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | GTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGTCCTACAGGTCTGATCAATGACTaGTTAGTAAATCCCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: VNPEPLPWISRSQNEGPTGLIND*LVNPEP Trigger: GGGCTCGGGATTTACTAAGCAGTCATTGATCAGACC...TGTAGGACCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | GATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCTTGCTGTAATTGGCGCTaGAGTCAGGGAAGGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: DIKVAERRSYNFLSTSSACCNWR*SQGRSR Trigger: TCTGCTCCTTCCCTGACTGCAGCGCCAATTACAGCA...AGCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | GGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCCAAGCTTCCAGGCTTTaGTGTAATTGGCGCTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: GYQGRRTKVLQLPVYFLSQASRL*CNWRCS Trigger: ACTGCAGCGCCAATTACAGCAAAGCCTGGAAGCTTG...GCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGTGTGCTTGCACAGGTaGGCGTCAAGCTTCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFVCLHR*ASSFQA Trigger: AGCCTGGAAGCTTGACGCGCACCTGTGCAAGCACAC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGTGTGCTTGCACAGGTaGGCGTCAAGCTTCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRVCLHR*ASSFQA Trigger: AGCCTGGAAGCTTGACGCGCACCTGTGCAAGCACAC...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR CCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTAGCCCTCGTGGGCCTTaGCATGTCGTTTCAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFSPRGP*HVVSAC Trigger: GCAAGCTGAAACGACATGCCAAGGCCCACGAGGGCT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
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| CDS-3UTR CCA 90 bp | TTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTGTCTTCCACACAAGGCTTTGCTGTAATTaGCGCTGCAGTCAGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: FLAKGKYCNCREHLVFHTRLCCN*RCSQGR Trigger: CCTTCCCTGACTGCAGCGCCAATTACAGCAAAGCCT...TGTGTGGAAGACAAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
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| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTGCTGTAATTGGCGCTaGAGTCAGGGAAGGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFCCNWR*SQGRSR Trigger: TCTGCTCCTTCCCTGACTGCAGCGCCAATTACAGCA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR CCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTAGGCTTTGCTGTAATTaGCGCTGCAGTCAGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFRLCCN*RCSQGR Trigger: CCTTCCCTGACTGCAGCGCCAATTACAGCAAAGCCT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR CCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGGGCGGCTTTCCTCATaGAAGGAGAGGATATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFGRLSS*KERIWL Trigger: AAGCCATATCCTCTCCTTCCATGAGGAAAGCCGCCC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
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| CDS-3UTR TCA 90 bp | GGATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCCTTCCTGGGTACACTTaGATAGAGGTTCATTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: GYQGRRTKVLQLPVYFLSLPGYT*IEVHWY Trigger: ATACCAATGAACCTCTATTCAAGTGTACCCAGGAAG...GCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCAAGCTTCCAGGCTTTaGTGTAATTGGCGCTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFQASRL*CNWRCS Trigger: ACTGCAGCGCCAATTACAGCAAAGCCTGGAAGCTTG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
||
| CDS-3UTR GCA 90 bp | TTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAGAGCATCTTGTCTTCCACACAGCCAAGGGTAAGTACTaGAACTGTCGAGAGCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: FLAKGKYCNCREHLVFHTAKGKY*NCREHL Trigger: AAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGC...TGTGTGGAAGACAAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGCTAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419181.5 |
||
| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTTTCAGCTTGCTGGGTaGTGCAAAGTGTTTCCCACA | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFFQLAG*CKVFPT Trigger: TGTGGGAAACACTTTGCATCACCCAGCAAGCTGAAA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTTCCACACAGTTGGGTaGCTCTCCGTTTTGACACAA | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFFHTVG*LSVLTQ Trigger: TTGTGTCAAAACGGAGAGTCACCCAACTGTGTGGAA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
||
| CDS-3UTR TCA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGAAAGAAAAGCATGCTCTaGGAGAAAGCTCGCTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRKKSML*EKARSL Trigger: CAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTT...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419181.5 |
||
| CDS-3UTR GCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGCCAAGGGTAAGTACTaGAACTGTCGAGAGCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFAKGKY*NCREHL Trigger: AAGATGCTCTCGACAGTTGCAGTACTTACCCTTGGC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
||
| CDS-3UTR CCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGTCGTTTCAGCTTGCTaGGTGATGCAAAGTGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFVVSAC*VMQSVS Trigger: GGAAACACTTTGCATCACCCAGCAAGCTGAAACGAC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS-3UTR TCA 90 bp | GATATCAAGGTCGCAGAACGAAGGTCCTACAACTTCCTGTCTACTTCCTCAGCTAAATGGTCTGATCAATaGCTGCTTAGTAAATCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: DIKVAERRSYNFLSTSSAKWSDQ*LLSKSR Trigger: TCGGGATTTACTAAGCAGTCATTGATCAGACCATTT...AGCTGAGGAAGTAGACAGGAAGTTGTAGGACCTTCGTTCTGCGACCTTGATATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS-3UTR CCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTTTCCCACATCCTTCCTaGGTACACTTGAATAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFFPHPS*VHLNRG Trigger: ACCTCTATTCAAGTGTACCCAGGAAGGATGTGGGAA...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS-3UTR TCA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCTTCCTGGGTACACTTaGATAGAGGTTCATTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: NKEKHALRESSLLGLQSFLPGYT*IEVHWY Trigger: ATACCAATGAACCTCTATTCAAGTGTACCCAGGAAG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS GCA 90 bp | GCCTCCAAGCCCAGGGCCAGGCGCGCTGCCACGTGCCGAGACACGTaGCGGGAACCGGCGCGCCCGGCCCACGGCTCCCTGCTGAACCTT | + |
|
Preference number: 5 (lower is better) Translates to: ASKPRARRAATCRDT*REPARPAHGSLLNL Trigger: AAGGTTCAGCAGGGAGCCGTGGGCCGGGCGCGCCGGTTCCCGGCACGTGTCTCGGCACGTGGCAGCGCGCCTGGCCCTGGGCTTGGAGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000435781.5 |
||
| CDS TCA 90 bp | GCGCGGGGCGCGGCGGGGTCGGAGCTGAGCTCTCGCCGGCTGCAATaGACGCGTCGGCGATGGTCAAGGACGACACCGACTCGGCGACCA | + |
|
Preference number: 5 (lower is better) Translates to: ARGAAGSELSSRRLQ*TRRRWSRTTPTRRP Trigger: TGGTCGCCGAGTCGGTGTCGTCCTTGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGCGCCCCGCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000381140.10 ENST00000419181.5 ENST00000435781.5 ENST00000438571.5 |
||
| CDS TCA 90 bp | GCAGATGAACCTCCTGGGAAGCGCGGGGCGCGGCGGGGTCGGAGCTaGGCTCTCGCCGGCTGCAATGAACGCGTCGGCGATGGTCAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: ADEPPGKRGARRGRS*ALAGCNERVGDGQG Trigger: TCCTTGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGCGCCCCGCGCTTCCCAGGAGGTTCATCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000381140.10 ENST00000419181.5 ENST00000435781.5 ENST00000438571.5 |
||
| CDS TCA 90 bp | CAAATGGTCTCTCCTGGGAAGCGCGGGGCGCGGCGGGGTCGGAGCTaGGCTCTCGCCGGCTGCAATGAACGCGTCGGCGATGGTCAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: QMVSPGKRGARRGRS*ALAGCNERVGDGQG Trigger: TCCTTGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGCGCCCCGCGCTTCCCAGGAGAGACCATTTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466776.5 |
||
| CDS TCA 90 bp | CTGTCTACTTCCTCAGCTCCTTCCCCAAGTCCTGGATGTCAAAGCTaGACGCGCTGCACAGCGGGGCCTGCGGCCCTGGCCACGACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LSTSSAPSPSPGCQS*TRCTAGPAALATTA Trigger: TGCAGTCGTGGCCAGGGCCGCAGGCCCCGCTGTGCAGCGCGTTCAGCTTTGACATCCAGGACTTGGGGAAGGAGCTGAGGAAGTAGACAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS GCA 90 bp | GGTGGCTATGTAAGACCGCAAGAGGGAGCTGGGCGGGGTGGAACATaGAGAGGGCAGAAGAGGATCCAACGAAAAGGGCAGACGAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GGYVRPQEGAGRGGT*RGQKRIQRKGQTRK Trigger: CTTCCTCGTCTGCCCTTTTCGTTGGATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 90 bp | TCATGCCGGTGGCTATGTAAGACCGCAAGAGGGAGCTGGGCGGGGTaGAACATGCAGAGGGCAGAAGAGGATCCAACGAAAAGGGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: SCRWLCKTARGSWAG*NMQRAEEDPTKRAD Trigger: GTCTGCCCTTTTCGTTGGATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCACCGGCATGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS-3UTR CAA 90 bp | CTGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAAGGACCTCCCCCGTGTGCTaGCACAGGTGCGCGTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: LLSKSRAPAMDIKVAERRTSPVC*HRCASS Trigger: GCTTGACGCGCACCTGTGCAAGCACACGGGGGAGGT...CCTTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS TCA 90 bp | CAAGGAAGAAGCGGTCGGCCTTCCAGTGCTGGAGAGGTTAAGGAATaGGGCCCCGGAGGACACCTGGAGAAGGTGGCCCATAAATTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: QGRSGRPSSAGEVKE*GPGGHLEKVAHKLE Trigger: CTCTAATTTATGGGCCACCTTCTCCAGGTGTCCTCCGGGGCCTCATTCCTTAACCTCTCCAGCACTGGAAGGCCGACCGCTTCTTCCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 90 bp | TGTTATGAGTCATGCCGGTGGCTATGTAAGACCGCAAGAGGGAGCTaGGCGGGGTGGAACATGCAGAGGGCAGAAGAGGATCCAACGAAA | + |
|
Preference number: 5 (lower is better) Translates to: CYESCRWLCKTARGS*AGWNMQRAEEDPTK Trigger: TTTCGTTGGATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCACCGGCATGACTCATAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCTCTCCCCCGTGTGCTaGCACAGGTGCGCGTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: NKEKHALRESSLLGLQSFLSPVC*HRCASS Trigger: GCTTGACGCGCACCTGTGCAAGCACACGGGGGAGAG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000381140.10 ENST00000419181.5 |
||
| CDS-3UTR CAA 90 bp | CCTTTAAACAAAGCAGTGCAGTTCTTAGCCAAGGGTAAGTACTGCAACTGTCGACTCTCCCCCGTGTGCTaGCACAGGTGCGCGTCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: PLNKAVQFLAKGKYCNCRLSPVC*HRCASS Trigger: GCTTGACGCGCACCTGTGCAAGCACACGGGGGAGAG...TCGACAGTTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419181.5 |
||
| CDS GCA 90 bp | GGGTCACAGGCTCCCTTTGTGTTCTCTCTACCTAGCACAAATGTCTaGATGGCTAGATCCTTCCTTCTTACACGGCTCACACAGAGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GSQAPFVFSLPSTNV*MARSFLLTRLTQRG Trigger: GCCTCTCTGTGTGAGCCGTGTAAGAAGGAAGGATCTAGCCATGCAGACATTTGTGCTAGGTAGAGAGAACACAAAGGGAGCCTGTGACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS TCA 90 bp | GCAGATTCCTTGACCTCCATGACCCTCGTTTTCCTCACTTGTGTGTaGCATGGGCTGCCACGTCATATCATGGTATCTGACATTCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: ADSLTSMTLVFLTCV*HGLPRHIMVSDILL Trigger: CAGGAGAATGTCAGATACCATGATATGACGTGGCAGCCCATGTCACACACAAGTGAGGAAAACGAGGGTCATGGAGGTCAAGGAATCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS TCA 90 bp | GTATGGACTGCAGCCCAGTGGTTTAAGAAATTAAGGGCTTTAAGCTaGGGCAGTGTGAAGCCTAGCTCTGCCAAAAACTGGGAAGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: VWTAAQWFKKLRALS*GSVKPSSAKNWEAG Trigger: CCCAGCTTCCCAGTTTTTGGCAGAGCTAGGCTTCACACTGCCTCAGCTTAAAGCCCTTAATTTCTTAAACCACTGGGCTGCAGTCCATAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 90 bp | CACAGGCTCCCTTTGTGTTCTCTCTACCTAGCACAAATGTCTGCATaGCTAGATCCTTCCTTCTTACACGGCTCACACAGAGAGGCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: HRLPLCSLYLAQMSA*LDPSFLHGSHREAF Trigger: AAAGGCCTCTCTGTGTGAGCCGTGTAAGAAGGAAGGATCTAGCCATGCAGACATTTGTGCTAGGTAGAGAGAACACAAAGGGAGCCTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS-3UTR CAA 90 bp | GACTGCTTAGTAAATCCCGAGCCCCTGCCATGGATATCAAGGTCGCAGAACGAACCTTCCTGGGTACACTaGAATAGAGGTTCATTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: DCLVNPEPLPWISRSQNEPSWVH*NRGSLV Trigger: TACCAATGAACCTCTATTCAAGTGTACCCAGGAAGG...TTCGTTCTGCGACCTTGATATCCATGGCAGGGGCTCGGGATTTACTAAGCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTGCATGTCGTTTCAGCTaGCTGGGTGATGCAAAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: NKEKHALRESSLLGLQSFACRFS*LGDAKC Trigger: ACACTTTGCATCACCCAGCAAGCTGAAACGACATGC...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTCCTTCCTGGGTACACTaGAATAGAGGTTCATTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: NKEKHALRESSLLGLQSFPSWVH*NRGSLV Trigger: TACCAATGAACCTCTATTCAAGTGTACCCAGGAAGG...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS-3UTR CAA 90 bp | AATAAAGAAAAGCATGCTCTGAGAGAAAGCTCGCTCCTTGGTCTGCAGTCCTTTAAAGGAACATCCTTTTaGACATACATAGCCCTCGTG | + |
|
Preference number: 5 (lower is better) Translates to: NKEKHALRESSLLGLQSFKGTSF*TYIALV Trigger: CACGAGGGCTATGTATGTCAAAAAGGATGTTCCTTT...AAAGGACTGCAGACCAAGGAGCGAGCTTTCTCTCAGAGCATGCTTTTCTTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000381140.10 |
||
| CDS TCA 90 bp | ACATTTGTCAAATTAATCTGCATGAGAGATCTGGGACAACAAAGATaGCTCCAAGTTTTTCAACCTGTATTAAGGAAACTGGTAGCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: TFVKLICMRDLGQQR*LQVFQPVLRKLVAP Trigger: TGGCGCTACCAGTTTCCTTAATACAGGTTGAAAAACTTGGAGTCATCTTTGTTGTCCCAGATCTCTCATGCAGATTAATTTGACAAATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS TCA 72 bp | CCTCCTGGGAAGCGCGGGGCGCGGCGGGGTCGGAGCTaGGCTCTCGCCGGCTGCAATGAACGCGTCGGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: PPGKRGARRGRS*ALAGCNERVGD Trigger: ATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGCGCCCCGCGCTTCCCAGGAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000381140.10 ENST00000419181.5 ENST00000435781.5 ENST00000438571.5 |
||
| CDS TCA 72 bp | TCTCCTGGGAAGCGCGGGGCGCGGCGGGGTCGGAGCTaGGCTCTCGCCGGCTGCAATGAACGCGTCGGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: SPGKRGARRGRS*ALAGCNERVGD Trigger: ATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGCGCCCCGCGCTTCCCAGGAGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466776.5 |
||
| CDS GCA 72 bp | TGGATGTCAAAGCTGAACGCGCTGCACAGCGGGGCCTaGGGCCCTGGCCACGACTGCAGTGGCTACCCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: WMSKLNALHSGA*GPGHDCSGYPG Trigger: CCCGGGGTAGCCACTGCAGTCGTGGCCAGGGCCGCAGGCCCCGCTGTGCAGCGCGTTCAGCTTTGACATCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS TCA 72 bp | GCGGCGGGGTCGGAGCTGAGCTCTCGCCGGCTGCAATaGACGCGTCGGCGATGGTCAAGGACGACACCGACT | + |
|
Preference number: 6 (lower is better) Translates to: AAGSELSSRRLQ*TRRRWSRTTPT Trigger: AGTCGGTGTCGTCCTTGACCATCGCCGACGCGTTCATTGCAGCCGGCGAGAGCTCAGCTCCGACCCCGCCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000381140.10 ENST00000419181.5 ENST00000435781.5 ENST00000438571.5 |
||
| CDS TCA 72 bp | TCCTCAGCTCCTTCCCCAAGTCCTGGATGTCAAAGCTaGACGCGCTGCACAGCGGGGCCTGCGGCCCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SSAPSPSPGCQS*TRCTAGPAALA Trigger: GGCCAGGGCCGCAGGCCCCGCTGTGCAGCGCGTTCAGCTTTGACATCCAGGACTTGGGGAAGGAGCTGAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438571.5 |
||
| CDS GCA 72 bp | GTAAGACCGCAAGAGGGAGCTGGGCGGGGTGGAACATaGAGAGGGCAGAAGAGGATCCAACGAAAAGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: VRPQEGAGRGGT*RGQKRIQRKGQ Trigger: CTGCCCTTTTCGTTGGATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 72 bp | TCATGCCGGTGGCTATGTAAGACCGCAAGAGGGAGCTaGGCGGGGTGGAACATGCAGAGGGCAGAAGAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: SCRWLCKTARGS*AGWNMQRAEED Trigger: ATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCACCGGCATGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 72 bp | TGGCTATGTAAGACCGCAAGAGGGAGCTGGGCGGGGTaGAACATGCAGAGGGCAGAAGAGGATCCAACGAAA | + |
|
Preference number: 6 (lower is better) Translates to: WLCKTARGSWAG*NMQRAEEDPTK Trigger: TTTCGTTGGATCCTCTTCTGCCCTCTGCATGTTCCACCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CCA 72 bp | GGGGCAAAGCATAAAGGATGTTATGAGTCATGCCGGTaGCTATGTAAGACCGCAAGAGGGAGCTGGGCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: GAKHKGCYESCR*LCKTARGSWAG Trigger: CCCCGCCCAGCTCCCTCTTGCGGTCTTACATAGCCACCGGCATGACTCATAACATCCTTTATGCTTTGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CAA 72 bp | AACAAATGGTCTCACCAGGGGCGGAGCCACAGAACCTaGCACAGCGGCAGGCGTGGAGTAGGCTCAATAAAC | + |
|
Preference number: 6 (lower is better) Translates to: NKWSHQGRSHRT*HSGRRGVGSIN Trigger: GTTTATTGAGCCTACTCCACGCCTGCCGCTGTGCAAGGTTCTGTGGCTCCGCCCCTGGTGAGACCATTTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS CAA 90 bp | ATAGTCACAAACAAATGGTCTCACCAGGGGCGGAGCCACAGAACCTaGCACAGCGGCAGGCGTGGAGTAGGCTCAATAAACATTTGTCAA | + |
|
Preference number: 6 (lower is better) Translates to: IVTNKWSHQGRSHRT*HSGRRGVGSINICQ Trigger: TTGACAAATGTTTATTGAGCCTACTCCACGCCTGCCGCTGTGCAAGGTTCTGTGGCTCCGCCCCTGGTGAGACCATTTGTTTGTGACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS TCA 72 bp | GTGCCTCTTGTGATGAGCCTTCGTAAGCTTGAGGGATaGAGCAGGACTTCCTTTCCCAGGCTCAATCTTAGC | + |
|
Preference number: 6 (lower is better) Translates to: VPLVMSLRKLEG*SRTSFPRLNLS Trigger: GCTAAGATTGAGCCTGGGAAAGGAAGTCCTGCTTCATCCCTCAAGCTTACGAAGGCTCATCACAAGAGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493903.1 |
||
| CDS CAA 72 bp | AGATTCCTTGACCTCCATGACCCTCGTTTTCCTCACTaGTGTGTGACATGGGCTGCCACGTCATATCATGGT | + |
|
Preference number: 6 (lower is better) Translates to: RFLDLHDPRFPH*CVTWAATSYHG Trigger: ACCATGATATGACGTGGCAGCCCATGTCACACACAAGTGAGGAAAACGAGGGTCATGGAGGTCAAGGAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS TCA 72 bp | GCAGCCCAGTGGTTTAAGAAATTAAGGGCTTTAAGCTaGGGCAGTGTGAAGCCTAGCTCTGCCAAAAACTGG | + |
|
Preference number: 6 (lower is better) Translates to: AAQWFKKLRALS*GSVKPSSAKNW Trigger: CCAGTTTTTGGCAGAGCTAGGCTTCACACTGCCTCAGCTTAAAGCCCTTAATTTCTTAAACCACTGGGCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470606.5 |
||
| CDS GCA 72 bp | GCTCCCTTTGTGTTCTCTCTACCTAGCACAAATGTCTaGATGGCTAGATCCTTCCTTCTTACACGGCTCACA | + |
|
Preference number: 6 (lower is better) Translates to: APFVFSLPSTNV*MARSFLLTRLT Trigger: TGTGAGCCGTGTAAGAAGGAAGGATCTAGCCATGCAGACATTTGTGCTAGGTAGAGAGAACACAAAGGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000470606.5 |
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| CDS CCA 72 bp | TCACTTGTGTGTGACATGGGCTGCCACGTCATATCATaGTATCTGACATTCTCCTGCCCTCAAAATAAAATC | + |
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Preference number: 6 (lower is better) Translates to: SLVCDMGCHVIS*YLTFSCPQNKI Trigger: GATTTTATTTTGAGGGCAGGAGAATGTCAGATACCATGATATGACGTGGCAGCCCATGTCACACACAAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000470606.5 |
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| CDS CAA 72 bp | ACAACAAGCCATTCTGGTTCCCCTTATCTTGGCATCTaGGCTTTGAATGATCTAAATCCTCTGCAAAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: TTSHSGSPYLGI*ALNDLNPLQSL Trigger: AAGGCTTTGCAGAGGATTTAGATCATTCAAAGCCAAGATGCCAAGATAAGGGGAACCAGAATGGCTTGTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493903.1 |
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| CDS TCA 72 bp | AAATTAATCTGCATGAGAGATCTGGGACAACAAAGATaGCTCCAAGTTTTTCAACCTGTATTAAGGAAACTG | + |
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Preference number: 6 (lower is better) Translates to: KLICMRDLGQQR*LQVFQPVLRKL Trigger: CAGTTTCCTTAATACAGGTTGAAAAACTTGGAGTCATCTTTGTTGTCCCAGATCTCTCATGCAGATTAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000470606.5 |
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