Pregenerated sensors for GTF2H2 (Homo sapiens)
Ensembl gene IDs: ENSG00000145736, ENSG00000276910Ensembl transcript IDs: ENST00000274400.9, ENST00000518275.1, ENST00000521602.2, ENST00000521858.5, ENST00000615242.1, ENST00000619345.4, ENST00000621171.1, ENST00000626950.1, ENST00000626970.1, ENST00000628423.2, ENST00000628942.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCACAAATTTCGGCCGGGCACGGTGGCGGAGGTGGGTGGATGACCTaGGGTCAGGAGTTGGAGATCAGACTGATCAACAAGGTGAAACCC | + |
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Preference number: 1 (lower is better) Translates to: SQISAGHGGGGGWMT*GQELEIRLINKVKP Trigger: GGGTTTCACCTTGTTGATCAGTCTGATCTCCAACTCCTGACCTCAGGTCATCCACCCACCTCCGCCACCGTGCCCGGCCGAAATTTGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628423.2 |
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| 3UTR TCA 72 bp | TCGGCCGGGCACGGTGGCGGAGGTGGGTGGATGACCTaGGGTCAGGAGTTGGAGATCAGCCTGATCAACAAG | + |
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Preference number: 3 (lower is better) Translates to: SAGHGGGGGWMT*GQELEISLINK Trigger: CTTGTTGATCAGGCTGATCTCCAACTCCTGACCTCAGGTCATCCACCCACCTCCGCCACCGTGCCCGGCCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000274400.9 |
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| 3UTR TCA 72 bp | GTGCTGGCAGGCTGTTGTTTCTGTTTAATATCCTTCTaGGTAAGCGGGTACCAAGTATGGCCATGGCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: VLAGCCFCLISF*VSGYQVWPWQS Trigger: AGACTGCCATGGCCATACTTGGTACCCGCTTACTCAGAAGGATATTAAACAGAAACAACAGCCTGCCAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000274400.9 ENST00000628423.2 |
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| 3UTR CAA 72 bp | ATCCCTTGTGGATACCTGGAAGCTGTGTTTATGGAATaGTTAAGAGATATTGGTTCCTTGATGCCTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: IPCGYLEAVFME*LRDIGSLMPVE Trigger: CTCCACAGGCATCAAGGAACCAATATCTCTTAACAATTCCATAAACACAGCTTCCAGGTATCCACAAGGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000274400.9 ENST00000628423.2 |
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| CDS GCA 90 bp | AATCACTTGAACCTGGCAGGTAGACACTGGAGCGAGCCAAGGTTGTaGCACTGCACTCCAGCCAAGCTATGTGAAACTGGCAAGGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: NHLNLAGRHWSEPRL*HCTPAKLCETGKGD Trigger: ATCACCCTTGCCAGTTTCACATAGCTTGGCTGGAGTGCAGTGGCACAACCTTGGCTCGCTCCAGTGTCTACCTGCCAGGTTCAAGTGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518275.1 ENST00000615242.1 ENST00000626950.1 |
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| CDS GCA 72 bp | GCAGGTAGACACTGGAGCGAGCCAAGGTTGTGCCACTaGACTCCAGCCAAGCTATGTGAAACTGGCAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: AGRHWSEPRLCH*TPAKLCETGKG Trigger: ACCCTTGCCAGTTTCACATAGCTTGGCTGGAGTGCAGTGGCACAACCTTGGCTCGCTCCAGTGTCTACCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518275.1 ENST00000615242.1 ENST00000626950.1 |
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| CDS GCA 72 bp | AACCTGGCAGGTAGACACTGGAGCGAGCCAAGGTTGTaGCACTGCACTCCAGCCAAGCTATGTGAAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: NLAGRHWSEPRL*HCTPAKLCETG Trigger: GCCAGTTTCACATAGCTTGGCTGGAGTGCAGTGGCACAACCTTGGCTCGCTCCAGTGTCTACCTGCCAGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000518275.1 ENST00000615242.1 ENST00000626950.1 |
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| CDS TCA 72 bp | AACTCAGGCCAATCAGAGTTCTCCCTAGACGTGTGCTaGAGCTATAGGCTACGGGTACAATGTAGACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: NSGQSEFSLDVC*SYRLRVQCRLG Trigger: TCCCAGTCTACATTGTACCCGTAGCCTATAGCTTCAGCACACGTCTAGGGAGAACTCTGATTGGCCTGAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000521858.5 ENST00000619345.4 ENST00000628942.2 |
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| CDS CCA 72 bp | CCTTGTTTTTCAGGTATGGGATTCAGGCTCAGAGGTTaGTCACTTTCTCAAGCGGGTCACAAACTCGAACCC | + |
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Preference number: 6 (lower is better) Translates to: PCFSGMGFRLRG*SLSQAGHKLEP Trigger: GGGTTCGAGTTTGTGACCCGCTTGAGAAAGTGACCAACCTCTGAGCCTGAATCCCATACCTGAAAAACAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000518275.1 ENST00000521602.2 ENST00000615242.1 ENST00000621171.1 ENST00000626950.1 ENST00000626970.1 |
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| CDS CCA 72 bp | CTGGCAAGGGTGATTACTGTCCTTGTTTTTCAGGTATaGGATTCAGGCTCAGAGGTTGGTCACTTTCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: LARVITVLVFQV*DSGSEVGHFLK Trigger: CTTGAGAAAGTGACCAACCTCTGAGCCTGAATCCCATACCTGAAAAACAAGGACAGTAATCACCCTTGCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000518275.1 ENST00000521602.2 ENST00000615242.1 ENST00000621171.1 ENST00000626950.1 ENST00000626970.1 |
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