Pregenerated sensors for GRIFIN (Homo sapiens)
Ensembl gene IDs: ENSG00000275572Ensembl transcript IDs: ENST00000611693.1, ENST00000614228.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCACCCAGACCTTGCCCTGGCCCACTGACCTGTAAGCGTCCACCGTaGACCCGCTGCCCACTGGCCCCCTGTTCCCCCACGGGCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: PPRPCPGPLTCKRPP*TRCPLAPCSPTGLP Trigger: GGGAAGGCCCGTGGGGGAACAGGGGGCCAGTGGGCAGCGGGTTCACGGTGGACGCTTACAGGTCAGTGGGCCAGGGCAAGGTCTGGGTGG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000611693.1 |
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| CDS CCA 90 bp | GCTCCACCTGGGCCAGGCAGTGGTCACTCAGCACGCGCACCCTGGTaGTGGCGCCCAGCGGCCTCTGACGGCATGGGAACTGTAGCACCT | + |
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Preference number: 5 (lower is better) Translates to: APPGPGSGHSARAPW*WRPAASDGMGTVAP Trigger: AGGTGCTACAGTTCCCATGCCGTCAGAGGCCGCTGGGCGCCACCACCAGGGTGCGCGTGCTGAGTGACCACTGCCTGGCCCAGGTGGAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614228.1 |
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| CDS CCA 90 bp | CCACCTGGGCCAGGCAGTGGTCACTCAGCACGCGCACCCTGGTGGTaGCGCCCAGCGGCCTCTGACGGCATGGGAACTGTAGCACCTTGT | + |
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Preference number: 5 (lower is better) Translates to: PPGPGSGHSARAPWW*RPAASDGMGTVAPC Trigger: ACAAGGTGCTACAGTTCCCATGCCGTCAGAGGCCGCTGGGCGCCACCACCAGGGTGCGCGTGCTGAGTGACCACTGCCTGGCCCAGGTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614228.1 |
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| CDS CCA 90 bp | AGCGGGAAGATGCTAGACACCTGCTCCGGGCCCCAGCGGCCGTACTaGAAGGCATTGCCCACCACAGTGGCGCTGGAGAACCGGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SGKMLDTCSGPQRPY*KALPTTVALENRGL Trigger: CAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATGCCTTCCAGTACGGCCGCTGGGGCCCGGAGCAGGTGTCTAGCATCTTCCCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CCA 90 bp | AAGAAGTTAGTCTCGAACCTGTCCTCTCCAGAGTCAGCATGTCCCTaGACCAGCAGCTTCCAGCCGGGGGCCAGGCCGCCCGCACAGAAG | + |
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Preference number: 5 (lower is better) Translates to: KKLVSNLSSPESACP*TSSFQPGARPPAQK Trigger: CTTCTGTGCGGGCGGCCTGGCCCCCGGCTGGAAGCTGCTGGTCCAGGGACATGCTGACTCTGGAGAGGACAGGTTCGAGACTAACTTCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CCA 90 bp | AAGGCATTGCCCACCACAGTGGCGCTGGAGAACCGGGGCTTGATGTaGAAGGCAATGTCCCCCGTCTCCAACAAGAAGTTAGTCTCGAAC | + |
|
Preference number: 5 (lower is better) Translates to: KALPTTVALENRGLM*KAMSPVSNKKLVSN Trigger: GTTCGAGACTAACTTCTTGTTGGAGACGGGGGACATTGCCTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATGCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS TCA 72 bp | AGCACGCGCACCCTGGTGGTGGCGCCCAGCGGCCTCTaGCGGCATGGGAACTGTAGCACCTTGTGCTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: STRTLVVAPSGL*RHGNCSTLCSG Trigger: CCCGGAGCACAAGGTGCTACAGTTCCCATGCCGTCAGAGGCCGCTGGGCGCCACCACCAGGGTGCGCGTGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614228.1 |
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| CDS CCA 72 bp | CCAGGCAGTGGTCACTCAGCACGCGCACCCTGGTGGTaGCGCCCAGCGGCCTCTGACGGCATGGGAACTGTA | + |
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Preference number: 6 (lower is better) Translates to: PGSGHSARAPWW*RPAASDGMGTV Trigger: TACAGTTCCCATGCCGTCAGAGGCCGCTGGGCGCCACCACCAGGGTGCGCGTGCTGAGTGACCACTGCCTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000614228.1 |
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| CDS CCA 72 bp | ATGCTAGACACCTGCTCCGGGCCCCAGCGGCCGTACTaGAAGGCATTGCCCACCACAGTGGCGCTGGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: MLDTCSGPQRPY*KALPTTVALEN Trigger: GTTCTCCAGCGCCACTGTGGTGGGCAATGCCTTCCAGTACGGCCGCTGGGGCCCGGAGCAGGTGTCTAGCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CAA 90 bp | ATGCTAGACACCTGCTCCGGGCCCCAGCGGCCGTACTGGAAGGCATaGCCCACCACAGTGGCGCTGGAGAACCGGGGCTTGATGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: MLDTCSGPQRPYWKA*PTTVALENRGLMWK Trigger: CTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATGCCTTCCAGTACGGCCGCTGGGGCCCGGAGCAGGTGTCTAGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CCA 72 bp | CCAGCCCAAAGTCCCCTCCTTTCTCCCAAGATGGGGTaGCTGGTAGCCAGGGTGGTGGGTACCTACTGCACA | + |
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Preference number: 6 (lower is better) Translates to: PAQSPLLSPKMG*LVARVVGTYCT Trigger: TGTGCAGTAGGTACCCACCACCCTGGCTACCAGCCACCCCATCTTGGGAGAAAGGAGGGGACTTTGGGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611693.1 |
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| CDS CAA 72 bp | GCATTGCCCACCACAGTGGCGCTGGAGAACCGGGGCTaGATGTGGAAGGCAATGTCCCCCGTCTCCAACAAG | + |
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Preference number: 6 (lower is better) Translates to: ALPTTVALENRG*MWKAMSPVSNK Trigger: CTTGTTGGAGACGGGGGACATTGCCTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS TCA 72 bp | CATTGCCCACCACAGTGGCGCTGGAGAACCGGGGCTTaGTGTGGAAGGCAATGTCCCCCGTCTCCAACAAGA | + |
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Preference number: 6 (lower is better) Translates to: HCPPQWRWRTGA*CGRQCPPSPTR Trigger: TCTTGTTGGAGACGGGGGACATTGCCTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CCA 72 bp | CCCACCACAGTGGCGCTGGAGAACCGGGGCTTGATGTaGAAGGCAATGTCCCCCGTCTCCAACAAGAAGTTA | + |
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Preference number: 6 (lower is better) Translates to: PTTVALENRGLM*KAMSPVSNKKL Trigger: TAACTTCTTGTTGGAGACGGGGGACATTGCCTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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| CDS CAA 90 bp | TACTGGAAGGCATTGCCCACCACAGTGGCGCTGGAGAACCGGGGCTaGATGTGGAAGGCAATGTCCCCCGTCTCCAACAAGAAGTTAGTC | + |
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Preference number: 6 (lower is better) Translates to: YWKALPTTVALENRG*MWKAMSPVSNKKLV Trigger: GACTAACTTCTTGTTGGAGACGGGGGACATTGCCTTCCACATCAAGCCCCGGTTCTCCAGCGCCACTGTGGTGGGCAATGCCTTCCAGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611693.1 ENST00000614228.1 |
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