Pregenerated sensors for GPC5-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000236240

Ensembl transcript IDs: ENST00000416664.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCCAACACATTTGTAGAATGTCTCCTTTGCATGAGGCACTATCGTaGTCAATGTTGTCTGTCCTTCTAAAGAGAGTAGCCTTTTATCAT	+
Preference number: 5 (lower is better) Translates to: SQHICRMSPLHEALS*SMLSVLLKRVAFYH Trigger: ATGATAAAAGGCTACTCTCTTTAGAAGGACAGACAACATTGACCACGATAGTGCCTCATGCAAAGGAGACATTCTACAAATGTGTTGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS GCA 90 bp	AGAAATTTCGCTGTCTTGAAATCAGTTATTTCTGTCTTCCTTGGATaGCGTATCACCATACTGTTAACTTTGATCTCTGAAGGGAGAATT	+
Preference number: 5 (lower is better) Translates to: RNFAVLKSVISVFLG*RITILLTLISEGRI Trigger: AATTCTCCCTTCAGAGATCAAAGTTAACAGTATGGTGATACGGCATCCAAGGAAGACAGAAATAACTGATTTCAAGACAGCGAAATTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS GCA 72 bp	CTTTCCATTCCCAACACATTTGTAGAATGTCTCCTTTaGATGAGGCACTATCGTGGTCAATGTTGTCTGTCC	+
Preference number: 6 (lower is better) Translates to: LSIPNTFVECLL*MRHYRGQCCLS Trigger: GGACAGACAACATTGACCACGATAGTGCCTCATGCAAAGGAGACATTCTACAAATGTGTTGGGAATGGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS CCA 72 bp	ATTTGTAGAATGTCTCCTTTGCATGAGGCACTATCGTaGTCAATGTTGTCTGTCCTTCTAAAGAGAGTAGCC	+
Preference number: 6 (lower is better) Translates to: ICRMSPLHEALS*SMLSVLLKRVA Trigger: GGCTACTCTCTTTAGAAGGACAGACAACATTGACCACGATAGTGCCTCATGCAAAGGAGACATTCTACAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS CAA 72 bp	ATGTCTCCTTTGCATGAGGCACTATCGTGGTCAATGTaGTCTGTCCTTCTAAAGAGAGTAGCCTTTTATCAT	+
Preference number: 6 (lower is better) Translates to: MSPLHEALSWSM*SVLLKRVAFYH Trigger: ATGATAAAAGGCTACTCTCTTTAGAAGGACAGACAACATTGACCACGATAGTGCCTCATGCAAAGGAGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS GCA 72 bp	GCTGTCTTGAAATCAGTTATTTCTGTCTTCCTTGGATaGCGTATCACCATACTGTTAACTTTGATCTCTGAA	+
Preference number: 6 (lower is better) Translates to: AVLKSVISVFLG*RITILLTLISE Trigger: TTCAGAGATCAAAGTTAACAGTATGGTGATACGGCATCCAAGGAAGACAGAAATAACTGATTTCAAGACAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS CAA 90 bp	GTTATTTCTGTCTTCCTTGGATGCCGTATCACCATACTGTTAACTTaGATCTCTGAAGGGAGAATTCCAAATGCCATTTTTCTCTTTCAT	+
Preference number: 6 (lower is better) Translates to: VISVFLGCRITILLT*ISEGRIPNAIFLFH Trigger: ATGAAAGAGAAAAATGGCATTTGGAATTCTCCCTTCAGAGATCAAAGTTAACAGTATGGTGATACGGCATCCAAGGAAGACAGAAATAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000416664.1
CDS CAA 90 bp	ATTTGTAGAATGTCTCCTTTGCATGAGGCACTATCGTGGTCAATGTaGTCTGTCCTTCTAAAGAGAGTAGCCTTTTATCATTTTTATTAT	+
Preference number: 6 (lower is better) Translates to: ICRMSPLHEALSWSM*SVLLKRVAFYHFYY Trigger: ATAATAAAAATGATAAAAGGCTACTCTCTTTAGAAGGACAGACAACATTGACCACGATAGTGCCTCATGCAAAGGAGACATTCTACAAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000416664.1

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