Pregenerated sensors for GOLGA8B (Homo sapiens)

Ensembl gene IDs: ENSG00000215252

Ensembl transcript IDs: ENST00000569100.5, ENST00000569811.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CACGCTAAGTCAAAGAAGCCAGTTGGAAAAAGACAAATGATTGTATaGTTTCACTCACATGTGGCACCTGGAGTCGTCAAATTCAGAGAC	+
Preference number: 5 (lower is better) Translates to: HAKSKKPVGKRQMIV*FHSHVAPGVVKFRD Trigger: GTCTCTGAATTTGACGACTCCAGGTGCCACATGTGAGTGAAATCATACAATCATTTGTCTTTTTCCAACTGGCTTCTTTGACTTAGCGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000569811.1
CDS CCA 90 bp	TGGAAAAAGACAAATGATTGTATGATTTCACTCACATGTGGCACCTaGAGTCGTCAAATTCAGAGACAGAAAGTAGAATGGTGGCTGCCA	+
Preference number: 5 (lower is better) Translates to: WKKTNDCMISLTCGT*SRQIQRQKVEWWLP Trigger: TGGCAGCCACCATTCTACTTTCTGTCTCTGAATTTGACGACTCCAGGTGCCACATGTGAGTGAAATCATACAATCATTTGTCTTTTTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000569811.1
CDS TCA 90 bp	AGTTTCAGATTGCAAGATGAAGAAAGTTCTGGAGATGGATGGTGGTaGTGGTTGCACAACACTCTGAGTGTATTTAATGCCACAGAATCA	+
Preference number: 5 (lower is better) Translates to: SFRLQDEESSGDGWW*WLHNTLSVFNATES Trigger: TGATTCTGTGGCATTAAATACACTCAGAGTGTTGTGCAACCATCACCACCATCCATCTCCAGAACTTTCTTCATCTTGCAATCTGAAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569811.1
CDS TCA 90 bp	AAGAAAGTTCTGGAGATGGATGGTGGTGATGGTTGCACAACACTCTaGGTGTATTTAATGCCACAGAATCATACACGTAGAAGTATTTCA	+
Preference number: 5 (lower is better) Translates to: KKVLEMDGGDGCTTL*VYLMPQNHTRRSIS Trigger: TGAAATACTTCTACGTGTATGATTCTGTGGCATTAAATACACTCAGAGTGTTGTGCAACCATCACCACCATCCATCTCCAGAACTTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569811.1
CDS TCA 72 bp	AGGGAAGCAAGGACCTTCTTCGCATGGCGTCAGGAATaGGAGGGAAGAGCGGGGGAGACCGCTACTTATAAA	+
Preference number: 6 (lower is better) Translates to: REARTFFAWRQE*EGRAGETATYK Trigger: TTTATAAGTAGCGGTCTCCCCCGCTCTTCCCTCTCATTCCTGACGCCATGCGAAGAAGGTCCTTGCTTCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000569100.5
CDS TCA 72 bp	CTGGAGATGGATGGTGGTGATGGTTGCACAACACTCTaGGTGTATTTAATGCCACAGAATCATACACGTAGA	+
Preference number: 6 (lower is better) Translates to: LEMDGGDGCTTL*VYLMPQNHTRR Trigger: TCTACGTGTATGATTCTGTGGCATTAAATACACTCAGAGTGTTGTGCAACCATCACCACCATCCATCTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569811.1
CDS TCA 72 bp	TCAAAGAAGCCAGTTGGAAAAAGACAAATGATTGTATaGTTTCACTCACATGTGGCACCTGGAGTCGTCAAA	+
Preference number: 6 (lower is better) Translates to: SKKPVGKRQMIV*FHSHVAPGVVK Trigger: TTTGACGACTCCAGGTGCCACATGTGAGTGAAATCATACAATCATTTGTCTTTTTCCAACTGGCTTCTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000569811.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu