Pregenerated sensors for GOLGA8A (Homo sapiens)
Ensembl gene IDs: ENSG00000175265Ensembl transcript IDs: ENST00000359187.5, ENST00000432566.6, ENST00000473125.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCGGCATCCGGGGGCAGTaGCTCAGCCATCTGGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSGIRGQ*LSHLVF Trigger: AAAAACCAGATGGCTGAGCCACTGCCCCCGGATGCC...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR TCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCCTTCAGGGTAGCAGATaGGACTGCACATGGAGATGT | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSLQGSR*DCTWRC Trigger: ACATCTCCATGTGCAGTCTCATCTGCTACCCTGAAG...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCTGGCAAATAACGCTTTaGCCTGGAATTGGCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSWQITL*PGIGIS Trigger: AGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCA...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCGCTTTGGCCTGGAATTaGCATTTCTTTCTCTACTTT | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSALAWN*HFFLYF Trigger: AAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGC...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCAATAACGCTTTGGCCTaGAATTGGCATTTCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSNNALA*NWHFFL Trigger: GAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATT...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR CCA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCCATTCTAAGAAAACTTaGCAAATAACGCTTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: NLANNALAWNWHFFLYFSHSKKT*QITLWP Trigger: AGGCCAAAGCGTTATTTGCCAAGTTTTCTTAGAATG...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS-3UTR CAA 90 bp | AACTTGGCAAATAACGCTTTGGCCTGGAATTGGCATTTCTTTCTCTACTTTTCCCGCTTTGGCCTGGAATaGGCATTTCTTTCTCTACTT | + |
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Preference number: 5 (lower is better) Translates to: NLANNALAWNWHFFLYFSRFGLE*AFLSLL Trigger: AAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCG...GGAAAAGTAGAGAAAGAAATGCCAATTCCAGGCCAAAGCGTTATTTGCCAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432566.6 |
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| CDS TCA 90 bp | CTTCACAAATACAAGTCAAACAATACCACCTCTATCATACAGACGTaGAAACAGAGGCCCAAAGAGCTCAAGCAACTTGCCCTAAATCAT | + |
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Preference number: 5 (lower is better) Translates to: LHKYKSNNTTSIIQT*KQRPKELKQLALNH Trigger: ATGATTTAGGGCAAGTTGCTTGAGCTCTTTGGGCCTCTGTTTTCACGTCTGTATGATAGAGGTGGTATTGTTTGACTTGTATTTGTGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473125.5 |
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| CDS TCA 72 bp | TCCTCGCCGCGCCGCTGCCGGGTCTCTCCCGGGGGCTaGGCTCCCGCAGAGCTCGCGCCTAGCCGCACACCT | + |
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Preference number: 6 (lower is better) Translates to: SSPRRCRVSPGG*APAELAPSRTP Trigger: AGGTGTGCGGCTAGGCGCGAGCTCTGCGGGAGCTCAGCCCCCGGGAGAGACCCGGCAGCGGCGCGGCGAGGA 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000359187.5 |
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| CDS TCA 72 bp | AGGTCAGTAGTTCCAAGACTAGCCTGCCCAACATGGTaGAACCCCGTCTCTACTGGGAGGCAGAGGTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: RSVVPRLACPTW*NPVSTGRQRLQ Trigger: CTGCAACCTCTGCCTCCCAGTAGAGACGGGGTTTCACCATGTTGGGCAGGCTAGTCTTGGAACTACTGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473125.5 |
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| CDS TCA 72 bp | TACAAGTCAAACAATACCACCTCTATCATACAGACGTaGAAACAGAGGCCCAAAGAGCTCAAGCAACTTGCC | + |
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Preference number: 6 (lower is better) Translates to: YKSNNTTSIIQT*KQRPKELKQLA Trigger: GGCAAGTTGCTTGAGCTCTTTGGGCCTCTGTTTTCACGTCTGTATGATAGAGGTGGTATTGTTTGACTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473125.5 |
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