Pregenerated sensors for GNG8 (Homo sapiens)

Ensembl gene IDs: ENSG00000167414

Ensembl transcript IDs: ENST00000300873.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGGGGTTCTCCGCGGCGGGTACTGGCGTCACCAGCGGGTCATCTTTaGCATGCGTCTCGCAGAAAGCCAGGAGTTCCGCTGCTGCCTGCG	+
Preference number: 5 (lower is better) Translates to: RGSPRRVLASPAGHL*HASRRKPGVPLLPA Trigger: CGCAGGCAGCAGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGGAGAACCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS GCA 90 bp	TTCTCCGCGGCGGGTACTGGCGTCACCAGCGGGTCATCTTTGGCATaGGTCTCGCAGAAAGCCAGGAGTTCCGCTGCTGCCTGCGACACC	+
Preference number: 5 (lower is better) Translates to: FSAAGTGVTSGSSLA*VSQKARSSAAACDT Trigger: GGTGTCGCAGGCAGCAGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGGAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS CCA 90 bp	ACAAAAGAGGCGCTTGTCGCGGAAGGGGTTCTCCGCGGCGGGTACTaGCGTCACCAGCGGGTCATCTTTGGCATGCGTCTCGCAGAAAGC	+
Preference number: 5 (lower is better) Translates to: TKEALVAEGVLRGGY*RHQRVIFGMRLAES Trigger: GCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGGAGAACCCCTTCCGCGACAAGCGCCTCTTTTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS CCA 72 bp	GCGCTTGTCGCGGAAGGGGTTCTCCGCGGCGGGTACTaGCGTCACCAGCGGGTCATCTTTGGCATGCGTCTC	+
Preference number: 6 (lower is better) Translates to: ALVAEGVLRGGY*RHQRVIFGMRL Trigger: GAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGGAGAACCCCTTCCGCGACAAGCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS CCA 72 bp	CCGCGGCGGGTACTGGCGTCACCAGCGGGTCATCTTTaGCATGCGTCTCGCAGAAAGCCAGGAGTTCCGCTG	+
Preference number: 6 (lower is better) Translates to: PRRVLASPAGHL*HASRRKPGVPL Trigger: CAGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS GCA 72 bp	GCGGGTACTGGCGTCACCAGCGGGTCATCTTTGGCATaGGTCTCGCAGAAAGCCAGGAGTTCCGCTGCTGCC	+
Preference number: 6 (lower is better) Translates to: AGTGVTSGSSLA*VSQKARSSAAA Trigger: GGCAGCAGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS CAA 72 bp	TCCGCGGCGGGTACTGGCGTCACCAGCGGGTCATCTTaGGCATGCGTCTCGCAGAAAGCCAGGAGTTCCGCT	+
Preference number: 6 (lower is better) Translates to: SAAGTGVTSGSS*ACVSQKARSSA Trigger: AGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAAGATGACCCGCTGGTGACGCCAGTACCCGCCGCGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS GCA 72 bp	TTTGGCATGCGTCTCGCAGAAAGCCAGGAGTTCCGCTaGTGCCTGCGACACCTTCATGCGGTCGATGTTCAC	+
Preference number: 6 (lower is better) Translates to: FGMRLAESQEFR*CLRHLHAVDVH Trigger: GTGAACATCGACCGCATGAAGGTGTCGCAGGCAGCAGCGGAACTCCTGGCTTTCTGCGAGACGCATGCCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS GCA 72 bp	CGATGTTCACCTCCAGCTTCAGCTGTTCCACCGTCTTaGGGGCCTCGGCAATCTTGGCCATGTTGTTGGACA	+
Preference number: 6 (lower is better) Translates to: RCSPPASAVPPS*GPRQSWPCCWT Trigger: TGTCCAACAACATGGCCAAGATTGCCGAGGCCCGCAAGACGGTGGAACAGCTGAAGCTGGAGGTGAACATCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000300873.4
CDS CAA 72 bp	TCGATGTTCACCTCCAGCTTCAGCTGTTCCACCGTCTaGCGGGCCTCGGCAATCTTGGCCATGTTGTTGGAC	+
Preference number: 6 (lower is better) Translates to: SMFTSSFSCSTV*RASAILAMLLD Trigger: GTCCAACAACATGGCCAAGATTGCCGAGGCCCGCAAGACGGTGGAACAGCTGAAGCTGGAGGTGAACATCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000300873.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu