RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLRA2 (Homo sapiens)

Ensembl gene IDs: ENSG00000101958

Ensembl transcript IDs: ENST00000218075.9, ENST00000355020.8, ENST00000415367.1, ENST00000443437.6

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CAGCATTTTCCTGAAAAAGTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGTTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGG +
Preference number: 2 (lower is better)
Translates to: QHFPEKVWSSTHYRLVTMLQAQH*GKKVPG
Trigger: CCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAA...CATAGTGACTAGCCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAAATGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR TCA 90 bp CAGCATTTTCCTGAAAAAGTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGCAGCCCTTAAGAACTTaGCCCCGCATATCATGTCTG +
Preference number: 2 (lower is better)
Translates to: QHFPEKVWSSTHYRLVTMQPLRT*PRISCL
Trigger: CAGACATGATATGCGGGGTCAAGTTCTTAAGGGCTG...CATAGTGACTAGCCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAAATGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR TCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAATTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGG +
Preference number: 2 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQLQAQH*GKKVPG
Trigger: CCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAA...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR GCA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGGGAAGGGAATTATTATaGTCCCGTGATTCTGCAACC +
Preference number: 2 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVGRELL*SRDSAT
Trigger: GGTTGCAGAATCACGGGAGCATAATAATTCCCTTCC...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR TCA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATATGGTTAAGCATTTTTaGAGTTTGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNMVKHF*SLCVCV
Trigger: CACACACACACACAAACTTCAAAAATGCTTAACCAT...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR TCA 72 bp ACACCTACAATGAGAGCAGAAATGGAAAGTTCAAGCTaGCCTGAGCTACACTGTTCAGGACACACCATCTCC +
Preference number: 3 (lower is better)
Translates to: TPTMRAEMESSS*PELHCSGHTIS
Trigger: GGAGATGGTGTGTCCTGAACAGTGTAGCTCAGGTCAGCTTGAACTTTCCATTTCTGCTCTCATTGTAGGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR TCA 72 bp CTGTTCAGGACACACCATCTCCATAAATACTGTAGCTaGGTAGCTGCAATGACTAGTCACAGTTGGGCGATT +
Preference number: 3 (lower is better)
Translates to: LFRTHHLHKYCS*VAAMTSHSWAI
Trigger: AATCGCCCAACTGTGACTAGTCATTGCAGCTACTCAGCTACAGTATTTATGGAGATGGTGTGTCCTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR CAA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAACAGCCCTTAAGAACTaGACCCCGCATATCATGTCT +
Preference number: 3 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQTALKN*TPHIMS
Trigger: AGACATGATATGCGGGGTCAAGTTCTTAAGGGCTGT...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR CAA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTGCAACCCCTTAATTTaGTGCAGTTTTCTTCATCAC +
Preference number: 3 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSICNPLI*CSFLHH
Trigger: GTGATGAAGAAAACTGCACAAAATTAAGGGGTTGCA...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
3UTR-3UTR CAA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTGAAATCATGGGTCAGTaGACATTAGGACTAGTAGTT +
Preference number: 3 (lower is better)
Translates to: HVALVPKRQRVMKITVQFEIMGQ*TLGLVV
Trigger: AACTACTAGTCCTAATGTCAACTGACCCATGATTTC...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCATCGTTAAGACTGTGGTaGTGCCCAGTGCGACCCTGG +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRASLRLW*CPVRPW
Trigger: CCAGGGTCGCACTGGGCATCACCACAGTCTTAACGA...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGTCGTTAAGACTGTGGTaGTGCCCAGTGCGACCCTGG +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRSLRLW*CPVRPW
Trigger: CCAGGGTCGCACTGGGCATCACCACAGTCTTAACGA...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATGCGCGCTGGAGTGGGTaGGGGGAAGAGGGAAAAATT +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHARWSG*GEEGKI
Trigger: AATTTTTCCCTCTTCCCCCCACCCACTCCAGCGCGC...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAGTCCAGGGAGTCATCTaGGTACTCACTGTACGCCAG +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAVQGVI*VLTVRQ
Trigger: CTGGCGTACAGTGAGTACCCAGATGACTCCCTGGAC...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATTTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHLQAQH*GKKVPG
Trigger: CCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAA...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATCCAGACCTGGAGTCATaGTCTTTGCAGAAAGCCGTC +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHPDLES*SLQKAV
Trigger: GACGGCTTTCTGCAAAGACCATGACTCCAGGTCTGG...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGTACATAGGAGACCTTTaGCAGAGATGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRYIGDL*QRCPGA
Trigger: GGCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTA...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGATCTTTTGGCGGTTGTaGGAGTGGGTTGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRIFWRL*EWVGRC
Trigger: ACACCTGCCAACCCACTCCCACAACCGCCAAAAGAT...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGCAGCCCTTAAGAACTTaGCCCCGCATATCATGTCTG +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRQPLRT*PRISCL
Trigger: CAGACATGATATGCGGGGTCAAGTTCTTAAGGGCTG...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTTTCGAAGGCAAAGAGTaGCTGGCCGTTCAGCGAGGG +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGFEGKE*LAVQRG
Trigger: CCCTCGCTGAACGGCCAGTCACTCTTTGCCTTCGAA...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR GCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATAGGAACTCCTTGTGTTaGCTGGAGACGAAGTTCACC +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHRNSLC*LETKFT
Trigger: GGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCT...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAAGGAACTCCTTGTGTTaGCTGGAGACGAAGTTCACC +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRARNSLC*LETKFT
Trigger: GGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCT...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGTCAGTGGTGACATCGTaGAAGTTGGCACCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRSVVTS*KLAPFS
Trigger: TGAGAAGGGTGCCAACTTCCACGATGTCACCACTGA...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATTCAGTGGTGACATCGTaGAAGTTGGCACCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHSVVTS*KLAPFS
Trigger: TGAGAAGGGTGCCAACTTCCACGATGTCACCACTGA...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAATGGCGGTTGTGGGAGTaGGTTGGCAGGTGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQWRLWE*VGRCGL
Trigger: AAGGCCACACCTGCCAACCCACTCCCACAACCGCCA...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGTGGCGGTTGTGGGAGTaGGTTGGCAGGTGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: KTISLCIYKHNTEARRSQWRLWE*VGRCGL
Trigger: AAGGCCACACCTGCCAACCCACTCCCACAACCGCCA...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAAGCATCTCCATCTTTTaGCGGTTGTGGGAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRASISIF*RLWEWV
Trigger: AACCCACTCCCACAACCGCCAAAAGATGGAGATGCT...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGGCAGGTGTGGCCTTaGCAGCTGTTCCATCTTTCA +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVWQVWP*QLFHLS
Trigger: TGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCA...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVLQAQH*GKKVPG
Trigger: CCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAA...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTGGTCAAACCGAGGCTTaGGACCATCAGTTAACCCAG +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCGQTEA*DHQLTQ
Trigger: CTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACC...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTACTCCTTGTGTTGCCTaGAGACGAAGTTCACCGCTG +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCTPCVA*RRSSPL
Trigger: CAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGT...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCACTCCTTGTGTTGCCTaGAGACGAAGTTCACCGCTG +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVTPCVA*RRSSPL
Trigger: CAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGACTCCTTGTGTTGCCTaGAGACGAAGTTCACCGCTG +
Preference number: 4 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLTPCVA*RRSSPL
Trigger: CAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGT...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTACTGTACGCCAGCCGTaGATCATTCCACTGTTGTCT +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCTVRQP*IIPLLS
Trigger: AGACAACAGTGGAATGATTCACGGCTGGCGTACAGT...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTTGGCAGGTGTGGCCTTaGCAGCTGTTCCATCTTTCA +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGWQVWP*QLFHLS
Trigger: TGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCA...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSILQAQH*GKKVPG
Trigger: CCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAA...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATCGTGTCAATCCTTTTTaGCCGGTCCACAAACTTCTT +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHRVNPF*PVHKLL
Trigger: AAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACG...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGGAAGGGAATTATTATaGTCCCGTGATTCTGCAACC +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRGRELL*SRDSAT
Trigger: GGTTGCAGAATCACGGGAGCATAATAATTCCCTTCC...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCATGGAGTCATGGTCTTTaGAGAAAGCCGTCATTCTCA +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAWSHGL*RKPSFS
Trigger: TGAGAATGACGGCTTTCTGCAAAGACCATGACTCCA...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAAGTTCTTCAAGTCCATaGGACAGGATAAGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRASSSSP*DRIRSR
Trigger: CCTTGACCTTATCCTGTCCCATGGACTTGAAGAACT...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATTGCATTGTACAGGTCTaGACATCCATCGGAAAGTTC +
Preference number: 4 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHCIVQV*TSIGKF
Trigger: GAACTTTCCGATGGATGTCCAGACCTGTACAATGCA...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGGAGGCAGCATTTTCCTaGAAAAGTTTGGTCCTCGAC +
Preference number: 4 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLEAAFS*KSLVLD
Trigger: GTCGAGGACCAAACTTTTTCAGGAAAATGCTGCCTC...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCTCAGCGAGGGGATACTaGAGGGGGTACGATGACAGC +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSSARGY*RGYDDS
Trigger: GCTGTCATCGTACCCCCTTCAGTATCCCCTCGCTGA...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR GCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAAATCCTTCAGCAACTTaGACTGGACCATCACTTAAC +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRANPSAT*TGPSLN
Trigger: GTTAAGTGATGGTCCAGTGCAAGTTGCTGAAGGATT...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAAAGAGGGGACGTGCCTaGTGTTCGAAGGCAAAGAGT +
Preference number: 4 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQKRGRA*CSKAKS
Trigger: ACTCTTTGCCTTCGAACAGCAGGCACGTCCCCTCTT...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCAAAAAGTGCCAGTCCTaGGCATCATGGTCAGGTCAA +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVKKCQS*ASWSGQ
Trigger: TTGACCTGACCATGATGCCCAGGACTGGCACTTTTT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTAAATGGAGTCTAGCATaGATGGGTCCAAGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGKWSLA*MGPSPG
Trigger: CCCTGGACTTGGACCCATCCATGCTAGACTCCATTT...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGGAGCCTGAACTCTaGGTGGTCATCGTTAAGACT +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGLEPEL*VVIVKT
Trigger: AGTCTTAACGATGACCACCCAGAGTTCAGGCTCCAG...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp AGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGCTGGAGCCTGAACTCTaGGTGGTCATCGTTAAGACT +
Preference number: 4 (lower is better)
Translates to: RQFHCVFTSTTLRQEGPRLEPEL*VVIVKT
Trigger: AGTCTTAACGATGACCACCCAGAGTTCAGGCTCCAG...CCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTGGCGGTTGTGGGAGTaGGTTGGCAGGTGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRWRLWE*VGRCGL
Trigger: AAGGCCACACCTGCCAACCCACTCCCACAACCGCCA...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCATTTGGCGTTCCAGATaGAACTTGACCTCAATGCAG +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVIWRSR*NLTSMQ
Trigger: CTGCATTGAGGTCAAGTTTCATCTGGAACGCCAAAT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTATGGAAAGTTCAAGCTaGCCTGAGCTACACTGTTCA +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCMESSS*PELHCS
Trigger: TGAACAGTGTAGCTCAGGTCAGCTTGAACTTTCCAT...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCATTGCTGAGATCCTGTaGTGGAATGAGGGCTATAGA +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVIAEIL*WNEGYR
Trigger: TCTATAGCCCTCATTCCAGCACAGGATCTCAGCAAT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR GCA 90 bp AGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGACCCTGGCAGGGGCTaGATCCATATTTATCCAAAA +
Preference number: 4 (lower is better)
Translates to: RQFHCVFTSTTLRQEGPRDPGRG*IHIYPK
Trigger: TTTTGGATAAATATGGATGCAGCCCCTGCCAGGGTC...CCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTGCTGAGATCCTGTGCTaGAATGAGGGCTATAGAATG +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGAEILC*NEGYRM
Trigger: CATTCTATAGCCCTCATTCCAGCACAGGATCTCAGC...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp CAGCATTTTCCTGAAAAAGTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGAAATGGAGTCTAGCATaGATGGGTCCAAGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: QHFPEKVWSSTHYRLVTMKWSLA*MGPSPG
Trigger: CCCTGGACTTGGACCCATCCATGCTAGACTCCATTT...CATAGTGACTAGCCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAAATGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGCATTGTACAGGTCTaGACATCCATCGGAAAGTTC +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVCIVQV*TSIGKF
Trigger: GAACTTTCCGATGGATGTCCAGACCTGTACAATGCA...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAAGCATCTCCATCTTTTaGCGGTTGTGGGAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVCIANFSVPSISIF*RLWEWV
Trigger: AACCCACTCCCACAACCGCCAAAAGATGGAGATGCT...TGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTACTGTACGCCAGCCGTaGATCATTCCACTGTTGTCT +
Preference number: 4 (lower is better)
Translates to: HVALVPKRQRVMKITVQFTVRQP*IIPLLS
Trigger: AGACAACAGTGGAATGATTCACGGCTGGCGTACAGT...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGATCGTTAAGACTGTGGTaGTGCCCAGTGCGACCCTGG +
Preference number: 4 (lower is better)
Translates to: SDIKTISLCIYKHNTEARSLRLW*CPVRPW
Trigger: CCAGGGTCGCACTGGGCATCACCACAGTCTTAACGA...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGTGGCAGGTGTGGCCTTaGCAGCTGTTCCATCTTTCA +
Preference number: 4 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVWQVWP*QLFHLS
Trigger: TGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCA...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAGAGGCAGCATTTTCCTaGAAAAGTTTGGTCCTCGAC +
Preference number: 4 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQEAAFS*KSLVLD
Trigger: GTCGAGGACCAAACTTTTTCAGGAAAATGCTGCCTC...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTATGGAAAGTTCAAGCTaGCCTGAGCTACACTGTTCA +
Preference number: 4 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSIMESSS*PELHCS
Trigger: TGAACAGTGTAGCTCAGGTCAGCTTGAACTTTCCAT...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCTGAAGGGGGTACGATaGCAGCAAGAGGAGAAGAGA +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSLKGVR*QQEEKR
Trigger: TCTCTTCTCCTCTTGCTGTCATCGTACCCCCTTCAG...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR TCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATTTATCTTGGTTCTaGAGTGGTTTGTCTCTAAGA +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAHLSWF*SGLSLR
Trigger: TCTTAGAGACAAACCACTTCAGAACCAAGATAAATG...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR GCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCAATCCTTCAGCAACTTaGACTGGACCATCACTTAAC +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVNPSAT*TGPSLN
Trigger: GTTAAGTGATGGTCCAGTGCAAGTTGCTGAAGGATT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTAGGAACTCCTTGTGTTaGCTGGAGACGAAGTTCACC +
Preference number: 4 (lower is better)
Translates to: HVALVPKRQRVMKITVQFRNSLC*LETKFT
Trigger: GGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCT...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTGGAAGGGAATTATTATaGTCCCGTGATTCTGCAACC +
Preference number: 4 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSIGRELL*SRDSAT
Trigger: GGTTGCAGAATCACGGGAGCATAATAATTCCCTTCC...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTCAGTCCTGGGCATCATaGTCAGGTCAAACCGAGGCT +
Preference number: 4 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFQSWAS*SGQTEA
Trigger: AGCCTCGGTTTGACCTGACCATGATGCCCAGGACTG...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGCCAGACCTGGAGTCATaGTCTTTGCAGAAAGCCGTC +
Preference number: 4 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVPDLES*SLQKAV
Trigger: GACGGCTTTCTGCAAAGACCATGACTCCAGGTCTGG...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGGTCCAGGGAGTCATCTaGGTACTCACTGTACGCCAG +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRVQGVI*VLTVRQ
Trigger: CTGGCGTACAGTGAGTACCCAGATGACTCCCTGGAC...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAAGTCCAGGGAGTCATCTaGGTACTCACTGTACGCCAG +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQVQGVI*VLTVRQ
Trigger: CTGGCGTACAGTGAGTACCCAGATGACTCCCTGGAC...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTAGTTCTTCAAGTCCATaGGACAGGATAAGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSISSSSP*DRIRSR
Trigger: CCTTGACCTTATCCTGTCCCATGGACTTGAAGAACT...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCATCTTTTGGCGGTTGTaGGAGTGGGTTGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSIFWRL*EWVGRC
Trigger: ACACCTGCCAACCCACTCCCACAACCGCCAAAAGAT...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCATGACTAGTCACAGTTaGGCGATTAAAGTCACGTGT +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVMTSHS*AIKVTC
Trigger: ACACGTGACTTTAATCGCCCAACTGTGACTAGTCAT...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAATTTGGCGTTCCAGATaGAACTTGACCTCAATGCAG +
Preference number: 4 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQIWRSR*NLTSMQ
Trigger: CTGCATTGAGGTCAAGTTTCATCTGGAACGCCAAAT...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTAAGTTCAAGCTGACCTaGGCTACACTGTTCAGGACA +
Preference number: 4 (lower is better)
Translates to: HVALVPKRQRVMKITVQFKFKLT*ATLFRT
Trigger: TGTCCTGAACAGTGTAGCTCAGGTCAGCTTGAACTT...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTTTCCTGTTTCTGTGTTaGTTGTGGAAAATATCCCGA +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCFLFLC*LWKISR
Trigger: TCGGGATATTTTCCACAAGCAACACAGAAACAGGAA...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGCTCCAAGCTCTGAAGTaGGCATGTTTCCTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: KTISLCIYKHNTEARRSQLQALK*ACFLFQ
Trigger: CTGAAAAAGGAAACATGCGCACTTCAGAGCTTGGAG...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAAGGTCAAACCGAGGCTTaGGACCATCAGTTAACCCAG +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQGQTEA*DHQLTQ
Trigger: CTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACC...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTAAAAAGTGCCAGTCCTaGGCATCATGGTCAGGTCAA +
Preference number: 4 (lower is better)
Translates to: HVALVPKRQRVMKITVQFKKCQS*ASWSGQ
Trigger: TTGACCTGACCATGATGCCCAGGACTGGCACTTTTT...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGTTTCTGTGTTGCTTGTaGAAAATATCCCGAAATGAT +
Preference number: 4 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRFLCCL*KISRND
Trigger: ATCATTTCGGGATATTTTCCACAAGCAACACAGAAA...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGTCAGTGGTGACATCGTaGAAGTTGGCACCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVSVVTS*KLAPFS
Trigger: TGAGAAGGGTGCCAACTTCCACGATGTCACCACTGA...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAATACATAGGAGACCTTTaGCAGAGATGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQYIGDL*QRCPGA
Trigger: GGCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTA...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTACATAGGAGACCTTTaGCAGAGATGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRYIGDL*QRCPGA
Trigger: GGCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTA...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGATCTTTTGGCGGTTGTaGGAGTGGGTTGGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRIFWRL*EWVGRC
Trigger: ACACCTGCCAACCCACTCCCACAACCGCCAAAAGAT...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAATTAAGCATCTCCATCTTTTaGCGGTTGTGGGAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCIANFSVPELSISIF*RLWEWV
Trigger: AACCCACTCCCACAACCGCCAAAAGATGGAGATGCT...TAATTCTGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAGTCACTATGGTCAGATaGTTAAGCATTTTTGAAGTT +
Preference number: 4 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAVTMVR*LSIFEV
Trigger: AACTTCAAAAATGCTTAACCATCTGACCATAGTGAC...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTAAGGCAAAGAGTGACTaGCCGTTCAGCGAGGGGATA +
Preference number: 4 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFKAKSD*PFSEGI
Trigger: TATCCCCTCGCTGAACGGCCAGTCACTCTTTGCCTT...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTCCAGATTCAAAATTTaGCAGGAACCTAGTTTCCCA +
Preference number: 4 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVSRFKI*QEPSFP
Trigger: TGGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGA...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR TCA 90 bp AGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGAAAATATCCCGAAATaGTTCCAGAAAGATGCTAGG +
Preference number: 4 (lower is better)
Translates to: RQFHCVFTSTTLRQEGPRENIPK*FQKDAR
Trigger: CCTAGCATCTTTCTGGAATCATTTCGGGATATTTTC...CCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGATGGTTAAGCATTTTTaGAGTTTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLMVKHF*SLCVCV
Trigger: CACACACACACACAAACTTCAAAAATGCTTAACCAT...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTGTAGTTTCTGCTATTaGCCCAAAGCTGTTGATAAA +
Preference number: 4 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLCSFCY*PKAVDK
Trigger: TTTATCAACAGCTTTGGGTCAATAGCAGAAACTACA...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000355020.8
CDS-3UTR TCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGGACAGCTCCAAGCTCTaGAGTGCGCATGTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRDSSKL*SAHVSF
Trigger: AAAGGAAACATGCGCACTTCAGAGCTTGGAGCTGTC...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR GCA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATCCAAAACTCTCCAGCTaGATTGTACAGGTCTGGACA +
Preference number: 4 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNPKLSS*IVQVWT
Trigger: TGTCCAGACCTGTACAATGCAGCTGGAGAGTTTTGG...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGATTCAAGAGGGGACGTaGCTGCTGTTCGAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRIQEGT*LLFEGK
Trigger: TTTGCCTTCGAACAGCAGGCACGTCCCCTCTTGAAT...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp TTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTTCCAGATTCAAAATTTaGCAGGAACCTAGTTTCCTT +
Preference number: 4 (lower is better)
Translates to: FHCVFTSTTLRQEGPRVCSRFKI*QEPSFL
Trigger: AAGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGA...ACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CCA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGACCAGACCTGGAGTCATaGTCTTTGCAGAAAGCCGTC +
Preference number: 4 (lower is better)
Translates to: SDIKTISLCIYKHNTEARPDLES*SLQKAV
Trigger: GACGGCTTTCTGCAAAGACCATGACTCCAGGTCTGG...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGCTGGAGCCTGAACTCTaGGTGGTCATCGTTAAGACT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRLEPEL*VVIVKT
Trigger: AGTCTTAACGATGACCACCCAGAGTTCAGGCTCCAG...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR TCA 90 bp CAGCATTTTCCTGAAAAAGTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGAAAATATCCCGAAATaGTTCCAGAAAGATGCTAGG +
Preference number: 4 (lower is better)
Translates to: QHFPEKVWSSTHYRLVTMENIPK*FQKDAR
Trigger: CCTAGCATCTTTCTGGAATCATTTCGGGATATTTTC...CATAGTGACTAGCCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAAATGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTATGGTTAAGCATTTTTaGAGTTTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGMVKHF*SLCVCV
Trigger: CACACACACACACAAACTTCAAAAATGCTTAACCAT...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCACATAAATACTGTAGCTaGGTAGCTGCAATGACTAGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVCIANFSVPHKYCS*VAAMTS
Trigger: ACTAGTCATTGCAGCTACTCAGCTACAGTATTTATG...TGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACACACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTAAGTTCAAGCTGACCTaGGCTACACTGTTCAGGACA +
Preference number: 4 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFKFKLT*ATLFRT
Trigger: TGTCCTGAACAGTGTAGCTCAGGTCAGCTTGAACTT...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp CAGCATTTTCCTGAAAAAGTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGTTCCTGTTTCTGTGTTaGTTGTGGAAAATATCCCGA +
Preference number: 4 (lower is better)
Translates to: QHFPEKVWSSTHYRLVTMFLFLC*LWKISR
Trigger: TCGGGATATTTTCCACAAGCAACACAGAAACAGGAA...CATAGTGACTAGCCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAAATGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAAAAATGTTCACTAGCTaGCGGTTCATTCCTGTTTCT +
Preference number: 4 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQKMFTS*RFIPVS
Trigger: AGAAACAGGAATGAACCGGCAGCTAGTGAACATTTT...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGCCAAAACTCTCCAGCTaGATTGTACAGGTCTGGACA +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRPKLSS*IVQVWT
Trigger: TGTCCAGACCTGTACAATGCAGCTGGAGAGTTTTGG...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAAGACCCTGGCAGGGGCTaGATCCATATTTATCCAAAA +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQDPGRG*IHIYPK
Trigger: TTTTGGATAAATATGGATGCAGCCCCTGCCAGGGTC...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGGACCCTGGCAGGGGCTaGATCCATATTTATCCAAAA +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRDPGRG*IHIYPK
Trigger: TTTTGGATAAATATGGATGCAGCCCCTGCCAGGGTC...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCGTGTCAATCCTTTTTaGCCGGTCCACAAACTTCTT +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSRVNPF*PVHKLL
Trigger: AAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACG...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR GCA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATCGTGTCAATCCTTTTTaGCCGGTCCACAAACTTCTT +
Preference number: 4 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNRVNPF*PVHKLL
Trigger: AAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACG...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAATTAAGTTCTTCAAGTCCATaGGACAGGATAAGGTCAAGG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCIANFSVPELSSSSP*DRIRSR
Trigger: CCTTGACCTTATCCTGTCCCATGGACTTGAAGAACT...TAATTCTGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCATCTTTCAAAATAAACTaGGGCAGGGTCAATCCTTCA +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVCIANFSVPSFKIN*GRVNPS
Trigger: TGAAGGATTGACCCTGCCCCAGTTTATTTTGAAAGA...TGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACACACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCATTTCCTGAAAAAGTTTaGTCCTCGACTCACTATAGG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVCIANFSVPFPEKV*SSTHYR
Trigger: CCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAA...TGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACACACACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAAATTTGGCGTTCCAGATaGAACTTGACCTCAATGCAG +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQIWRSR*NLTSMQ
Trigger: CTGCATTGAGGTCAAGTTTCATCTGGAACGCCAAAT...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTTTTCTGTGTTGCTTGTaGAAAATATCCCGAAATGAT +
Preference number: 4 (lower is better)
Translates to: TISLCIYKHNTEARRSQGFLCCL*KISRND
Trigger: ATCATTTCGGGATATTTTCCACAAGCAACACAGAAA...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTGCATTGTACAGGTCTaGACATCCATCGGAAAGTTC +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRCIVQV*TSIGKF
Trigger: GAACTTTCCGATGGATGTCCAGACCTGTACAATGCA...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp AGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCACTATGGTCAGATaGTTAAGCATTTTTGAAGTT +
Preference number: 4 (lower is better)
Translates to: RQFHCVFTSTTLRQEGPRVTMVR*LSIFEV
Trigger: AACTTCAAAAATGCTTAACCATCTGACCATAGTGAC...CCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATGAAAATATCCCGAAATaGTTCCAGAAAGATGCTAGG +
Preference number: 4 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNENIPK*FQKDAR
Trigger: CCTAGCATCTTTCTGGAATCATTTCGGGATATTTTC...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAATTAATTATTATGCTCCCGTaGTTCTGCAACCCCTTAATT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCIANFSVPELIIMLP*FCNPLI
Trigger: AATTAAGGGGTTGCAGAATCACGGGAGCATAATAAT...TAATTCTGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGCATAAATACTGTAGCTaGGTAGCTGCAATGACTAGT +
Preference number: 4 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVHKYCS*VAAMTS
Trigger: ACTAGTCATTGCAGCTACTCAGCTACAGTATTTATG...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCCATGGTCGTTTCTGTaGCTGATCCAAAACTTTAAA +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSPWSFL*LIQNFK
Trigger: TTTAAAGTTTTGGATCAGTCACAGAAACGACCATGG...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CCA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCTCTTTCAAAATAAACTaGGGCAGGGTCAATCCTTCA +
Preference number: 4 (lower is better)
Translates to: IKTISLCIYKHNTEARRSSFKIN*GRVNPS
Trigger: TGAAGGATTGACCCTGCCCCAGTTTATTTTGAAAGA...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGATGACTAGTCACAGTTaGGCGATTAAAGTCACGTGT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRMTSHS*AIKVTC
Trigger: ACACGTGACTTTAATCGCCCAACTGTGACTAGTCAT...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR TCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGATTATTATGCTCCCGTaGTTCTGCAACCCCTTAATT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRIIMLP*FCNPLI
Trigger: AATTAAGGGGTTGCAGAATCACGGGAGCATAATAAT...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTTTCCTGTTTCTGTGTTaGTTGTGGAAAATATCCCGA +
Preference number: 4 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFFLFLC*LWKISR
Trigger: TCGGGATATTTTCCACAAGCAACACAGAAACAGGAA...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR GCA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAATCCTTCAGCAACTTaGACTGGACCATCACTTAAC +
Preference number: 4 (lower is better)
Translates to: SDIKTISLCIYKHNTEARNPSAT*TGPSLN
Trigger: GTTAAGTGATGGTCCAGTGCAAGTTGCTGAAGGATT...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAATTATCCAGATTCAAAATTTaGCAGGAACCTAGTTTCCTT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCIANFSVPELSRFKI*QEPSFL
Trigger: AAGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGA...TAATTCTGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTTTTCCTGAAAAAGTTTaGTCCTCGACTCACTATAGG +
Preference number: 4 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFFPEKV*SSTHYR
Trigger: CCTATAGTGAGTCGAGGACCAAACTTTTTCAGGAAA...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
38% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CCA 90 bp AGAACAATGCTAAAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAAGCAAGTAACGTTTACTaGAGGACCTTTAAAATTTGG +
Preference number: 4 (lower is better)
Translates to: RTMLKIMEGNYYAPVILQASNVY*RTFKIW
Trigger: CCAAATTTTAAAGGTCCTCCAGTAAACGTTACTTGC...TTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTTTAGCATTGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CCA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTTTCTGTGTTGCTTGTaGAAAATATCCCGAAATGAT +
Preference number: 4 (lower is better)
Translates to: DIKTISLCIYKHNTEARRFLCCL*KISRND
Trigger: ATCATTTCGGGATATTTTCCACAAGCAACACAGAAA...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CCA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAAAGCCGTCCTGAAGTaGTTTGTCTCTAAGAAAAAT +
Preference number: 4 (lower is better)
Translates to: SDIKTISLCIYKHNTEARKAVLK*FVSKKN
Trigger: ATTTTTCTTAGAGACAAACCACTTCAGGACGGCTTT...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS TCA 90 bp AAGAGTGACTGGCCGTTCAGCGAGGGGATACTGAAGGGGGTACGATaGCAGCAAGAGGAGAAGAGAGGTCGGGAGACGGAGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: KSDWPFSEGILKGVR*QQEEKRGRETERVR
Trigger: CCTCACCCTCTCCGTCTCCCGACCTCTCTTCTCCTCTTGCTGTCATCGTACCCCCTTCAGTATCCCCTCGCTGAACGGCCAGTCACTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS TCA 90 bp GCTGTTCGAAGGCAAAGAGTGACTGGCCGTTCAGCGAGGGGATACTaGAGGGGGTACGATGACAGCAAGAGGAGAAGAGAGGTCGGGAGA +
Preference number: 5 (lower is better)
Translates to: AVRRQRVTGRSARGY*RGYDDSKRRREVGR
Trigger: TCTCCCGACCTCTCTTCTCCTCTTGCTGTCATCGTACCCCCTTCAGTATCCCCTCGCTGAACGGCCAGTCACTCTTTGCCTTCGAACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS TCA 90 bp CTCCATCTTTTGGCGGTTGTGGGAGTGGGTTGGCAGGTGTGGCCTTaGCAGCTGTTCCATCTTTCACTTGGAGGCAGTGACCCATCCCAT +
Preference number: 5 (lower is better)
Translates to: LHLLAVVGVGWQVWP*QLFHLSLGGSDPSH
Trigger: ATGGGATGGGTCACTGCCTCCAAGTGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS GCA 90 bp TTCTGCCTCTTCTGTCTTCTTCGGAGGCGCAGGAACTCCTTGTGTTaGCTGGAGACGAAGTTCACCGCTGCGTATTCCAGTAAGGCAGCA +
Preference number: 5 (lower is better)
Translates to: FCLFCLLRRRRNSLC*LETKFTAAYSSKAA
Trigger: TGCTGCCTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGCAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 90 bp GCCTCTTCTGTCTTCTTCGGAGGCGCAGGAACTCCTTGTGTTGCCTaGAGACGAAGTTCACCGCTGCGTATTCCAGTAAGGCAGCAAACA +
Preference number: 5 (lower is better)
Translates to: ASSVFFGGAGTPCVA*RRSSPLRIPVRQQT
Trigger: TGTTTGCTGCCTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 90 bp TTTTGCCCGGTCCACAAACTTCTTCTTGATAGCATCTCCATCTTTTaGCGGTTGTGGGAGTGGGTTGGCAGGTGTGGCCTTGACAGCTGT +
Preference number: 5 (lower is better)
Translates to: FCPVHKLLLDSISIF*RLWEWVGRCGLDSC
Trigger: ACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAAGGTCAAACCGAGGCTaGGGACCATCAGTTAACCCA +
Preference number: 5 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRARSNRG*GPSVNP
Trigger: TGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCT...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CAA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATCTGGAGTCATGGTCTTaGCAGAAAGCCGTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHLESWS*QKAVLK
Trigger: CTTCAGGACGGCTTTCTGCAAAGACCATGACTCCAG...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CAA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGTTACATAGGAGACCTTaGGCAGAGATGCCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRLHRRP*AEMPWS
Trigger: GCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTAA...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 90 bp AAAAAGTGCCAGTCCTGGGCATCATGGTCAGGTCAAACCGAGGCTTaGGACCATCAGTTAACCCAGAAAGACAAAGCCTCAGAACTGATG +
Preference number: 5 (lower is better)
Translates to: KKCQSWASWSGQTEA*DHQLTQKDKASELM
Trigger: CATCAGTTCTGAGGCTTTGTCTTTCTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCTGACCATGATGCCCAGGACTGGCACTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS CCA 90 bp GTCCACAAACTTCTTCTTGATAGCATCTCCATCTTTTGGCGGTTGTaGGAGTGGGTTGGCAGGTGTGGCCTTGACAGCTGTTCCATCTTT +
Preference number: 5 (lower is better)
Translates to: VHKLLLDSISIFWRL*EWVGRCGLDSCSIF
Trigger: AAAGATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTAGGCGCAGGAACTCCTaGTGTTGCCTGGAGACGAAG +
Preference number: 5 (lower is better)
Translates to: TISLCIYKHNTEARRSQGRRRNS*CCLETK
Trigger: CTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCT...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGGTGACATCGTGGAAGTaGGCACCCTTCTCATTGGCA +
Preference number: 5 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLVTSWK*APFSLA
Trigger: TGCCAATGAGAAGGGTGCCAACTTCCACGATGTCAC...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATACAGCCCTTAAGAACTaGACCCCGCATATCATGTCT +
Preference number: 5 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHTALKN*TPHIMS
Trigger: AGACATGATATGCGGGGTCAAGTTCTTAAGGGCTGT...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGACAGCCCTTAAGAACTaGACCCCGCATATCATGTCT +
Preference number: 5 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCRTALKN*TPHIMS
Trigger: AGACATGATATGCGGGGTCAAGTTCTTAAGGGCTGT...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS GCA 90 bp GAAGGCCAATGGGAAGGCAGCTCGAGATATCGTGTCAATCCTTTTTaGCCGGTCCACAAACTTCTTCTTGATAGCATCTCCATCTTTTGG +
Preference number: 5 (lower is better)
Translates to: EGQWEGSSRYRVNPF*PVHKLLLDSISIFW
Trigger: CCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGATATCTCGAGCTGCCTTCCCATTGGCCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp CACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGAAATCCGTAGCAATTaGTTGTCAGTGGTGACATCG +
Preference number: 5 (lower is better)
Translates to: HCVFTSTTLRQEGPRVCREIRSN*LSVVTS
Trigger: CGATGTCACCACTGACAACAAATTGCTACGGATTTC...CCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTTTACATAGGAGACCTTaGGCAGAGATGCCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: TISLCIYKHNTEARRSQGLHRRP*AEMPWS
Trigger: GCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTAA...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp GTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATGTCCTTCCCATTAACTaGTCCAAGAAATCTGAAGGA +
Preference number: 5 (lower is better)
Translates to: VFTSTTLRQEGPRVCRAHVLPIN*SKKSEG
Trigger: TCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGAC...ATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGTGACATCGTGGAAGTaGGCACCCTTCTCATTGGCA +
Preference number: 5 (lower is better)
Translates to: KTISLCIYKHNTEARRSQVTSWK*APFSLA
Trigger: TGCCAATGAGAAGGGTGCCAACTTCCACGATGTCAC...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGTTACATAGGAGACCTTaGGCAGAGATGCCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: KTISLCIYKHNTEARRSQLHRRP*AEMPWS
Trigger: GCTCCAGGGCATCTCTGCCAAAGGTCTCCTATGTAA...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGAGGCGCAGGAACTCCTaGTGTTGCCTGGAGACGAAG +
Preference number: 5 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVRRRNS*CCLETK
Trigger: CTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCT...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCAGGCGCAGGAACTCCTaGTGTTGCCTGGAGACGAAG +
Preference number: 5 (lower is better)
Translates to: IKTISLCIYKHNTEARRSRRRNS*CCLETK
Trigger: CTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCT...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCTCCATCTTTTGGCGGTaGTGGGAGTGGGTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: IKTISLCIYKHNTEARRSSIFWR*WEWVGR
Trigger: CCTGCCAACCCACTCCCACAACCGCCAAAAGATGGA...GGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTCGTGTCAATCCTTTTaGCCCGGTCCACAAACTTCT +
Preference number: 5 (lower is better)
Translates to: ISLCIYKHNTEARRSQGLSCQSF*PGPQTS
Trigger: AGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGA...CAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp GATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCATCTTTTGGCGGTaGTGGGAGTGGGTTGGCAGG +
Preference number: 5 (lower is better)
Translates to: DIKTISLCIYKHNTEARRSIFWR*WEWVGR
Trigger: CCTGCCAACCCACTCCCACAACCGCCAAAAGATGGA...CCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp GTTTGGTCCTCGACTCACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTGGGCACATCTATTTCTaGTGGACATCTTCATGCCGA +
Preference number: 5 (lower is better)
Translates to: VWSSTHYRLVTMVRWLSIGHIYF*WTSSCR
Trigger: TCGGCATGAAGATGTCCACAAGAAATAGATGTGCCC...AATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTGAGTCGAGGACCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTGGGCACATCTATTTCTaGTGGACATCTTCATGCCGA +
Preference number: 5 (lower is better)
Translates to: TISLCIYKHNTEARRSQGGHIYF*WTSSCR
Trigger: TCGGCATGAAGATGTCCACAAGAAATAGATGTGCCC...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCAGAAATCATGGGTCAGTaGACATTAGGACTAGTAGTT +
Preference number: 5 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAEIMGQ*TLGLVV
Trigger: AACTACTAGTCCTAATGTCAACTGACCCATGATTTC...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS CCA 90 bp AGAAATCTGAAGGAGATAGGGTCTGTGAAGGTTGTTTTCCAGACCTaGAGTCATGGTCTTTGCAGAAAGCCGTCATTCTCATATGCAGAT +
Preference number: 5 (lower is better)
Translates to: RNLKEIGSVKVVFQT*SHGLCRKPSFSYAD
Trigger: ATCTGCATATGAGAATGACGGCTTTCTGCAAAGACCATGACTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCTTCAGATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415367.1
ENST00000443437.6
CDS-3UTR CAA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTGGGAAGAGGGAAAAATaGCTGAGATCCTGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: HVALVPKRQRVMKITVQFGKREK*LRSCAG
Trigger: TCCAGCACAGGATCTCAGCAATTTTTCCCTCTTCCC...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CAA 90 bp TGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGTAGGGCACAAATAATATCCCATTaGGCGTTCCAGATGAAACTT +
Preference number: 5 (lower is better)
Translates to: CVFTSTTLRQEGPRVCRAQIISH*AFQMKL
Trigger: AAGTTTCATCTGGAACGCCAAATGGGATATTATTTG...TGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGTCGTGTCAATCCTTTTaGCCCGGTCCACAAACTTCT +
Preference number: 5 (lower is better)
Translates to: KTISLCIYKHNTEARRSQSCQSF*PGPQTS
Trigger: AGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGA...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCCTGTTTCTGTGTTGCTaGTGGAAAATATCCCGAAAT +
Preference number: 5 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVLFLCC*WKISRN
Trigger: ATTTCGGGATATTTTCCACAAGCAACACAGAAACAG...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AAGATTATGGAAGGGAATTATTATGCTCCCGTGATTCTGCAACCCCTTAATTTTCTGGAGTCATGGTCTTaGCAGAAAGCCGTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: KIMEGNYYAPVILQPLNFLESWS*QKAVLK
Trigger: CTTCAGGACGGCTTTCTGCAAAGACCATGACTCCAG...AAAATTAAGGGGTTGCAGAATCACGGGAGCATAATAATTCCCTTCCATAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000218075.9
CDS-3UTR CAA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAAGAAATCCGTAGCAATTaGTTGTCAGTGGTGACATCG +
Preference number: 5 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQEIRSN*LSVVTS
Trigger: CGATGTCACCACTGACAACAAATTGCTACGGATTTC...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp CAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTCTGCAACCCCTTAATTTaGTGCAGTTTTCTTCATCAC +
Preference number: 5 (lower is better)
Translates to: QFHCVFTSTTLRQEGPRVCNPLI*CSFLHH
Trigger: GTGATGAAGAAAACTGCACAAAATTAAGGGGTTGCA...GACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCAAACCGAGGCTaGGGACCATCAGTTAACCCA +
Preference number: 5 (lower is better)
Translates to: SDIKTISLCIYKHNTEARRSNRG*GPSVNP
Trigger: TGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCT...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS-3UTR CAA 90 bp AAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGTCCTTCCCATTAACTaGTCCAAGAAATCTGAAGGA +
Preference number: 5 (lower is better)
Translates to: KTISLCIYKHNTEARRSQVLPIN*SKKSEG
Trigger: TCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGAC...CTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp CACGTAGCTCTGGTACCAAAAAGGCAACGGGTTATGAAAATCACAGTACAATTTGAAATCCGTAGCAATTaGTTGTCAGTGGTGACATCG +
Preference number: 5 (lower is better)
Translates to: HVALVPKRQRVMKITVQFEIRSN*LSVVTS
Trigger: CGATGTCACCACTGACAACAAATTGCTACGGATTTC...AAATTGTACTGTGATTTTCATAACCCGTTGCCTTTTTGGTACCAGAGCTACGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS TCA 90 bp CGGTTCATTCCTGTTTCTGTGTTGCTTGTGGAAAATATCCCGAAATaGTTCCAGAAAGATGCTAGGACAAAGTGTCTGTTTATTGTCCAG +
Preference number: 5 (lower is better)
Translates to: RFIPVSVLLVENIPK*FQKDARTKCLFIVQ
Trigger: CTGGACAATAAACAGACACTTTGTCCTAGCATCTTTCTGGAATCATTTCGGGATATTTTCCACAAGCAACACAGAAACAGGAATGAACCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 90 bp AAATGTTCACTAGCTGCCGGTTCATTCCTGTTTCTGTGTTGCTTGTaGAAAATATCCCGAAATGATTCCAGAAAGATGCTAGGACAAAGT +
Preference number: 5 (lower is better)
Translates to: KCSLAAGSFLFLCCL*KISRNDSRKMLGQS
Trigger: ACTTTGTCCTAGCATCTTTCTGGAATCATTTCGGGATATTTTCCACAAGCAACACAGAAACAGGAATGAACCGGCAGCTAGTGAACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp ACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGGTTCCACAAACTTCTTCTaGATAGCATCTCCATCTTTT +
Preference number: 5 (lower is better)
Translates to: TISLCIYKHNTEARRSQGSTNFF*IASPSF
Trigger: AAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGA...ACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAAGGTCCCAGGTCCACAAACTTCTTCTaGATAGCATCTCCATCTTTT +
Preference number: 5 (lower is better)
Translates to: RQFHCVFTSTTLRQEGPRSTNFF*IASPSF
Trigger: AAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGA...CCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAAATCATGGGTCAGTaGACATTAGGACTAGTAGTT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCVCIANFSVPEIMGQ*TLGLVV
Trigger: AACTACTAGTCCTAATGTCAACTGACCCATGATTTC...TGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACACACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGACTGGAGTCATGGTCTTaGCAGAAAGCCGTCATTCTC +
Preference number: 5 (lower is better)
Translates to: SDIKTISLCIYKHNTEARLESWS*QKAVIL
Trigger: GAGAATGACGGCTTTCTGCAAAGACCATGACTCCAG...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CAA 90 bp GCTGCAATGACTAGTCACAGTTGGGCGATTAAAGTCACGTGTAAATATAGCCAACAAATAATATCCCATTaGGCGTTCCAGATGAAACTT +
Preference number: 5 (lower is better)
Translates to: AAMTSHSWAIKVTCKYSQQIISH*AFQMKL
Trigger: AAGTTTCATCTGGAACGCCAAATGGGATATTATTTG...TTGGCTATATTTACACGTGACTTTAATCGCCCAACTGTGACTAGTCATTGCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGATCGTGTCAATCCTTTTaGCCCGGTCCACAAACTTCT +
Preference number: 5 (lower is better)
Translates to: SDIKTISLCIYKHNTEARSCQSF*PGPQTS
Trigger: AGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGA...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAGGGCACATCTATTTCTaGTGGACATCTTCATGCCGA +
Preference number: 5 (lower is better)
Translates to: SDIKTISLCIYKHNTEARGHIYF*WTSSCR
Trigger: TCGGCATGAAGATGTCCACAAGAAATAGATGTGCCC...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp CACTATAGGCTAGTCACTATGGTCAGATGGTTAAGCATTTTTGAAGTTTGTGTGCTGTTTCTGTGTTGCTaGTGGAAAATATCCCGAAAT +
Preference number: 5 (lower is better)
Translates to: HYRLVTMVRWLSIFEVCVLFLCC*WKISRN
Trigger: ATTTCGGGATATTTTCCACAAGCAACACAGAAACAG...CACACAAACTTCAAAAATGCTTAACCATCTGACCATAGTGACTAGCCTATAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATTGCAACCCCTTAATTTaGTGCAGTTTTCTTCATCAC +
Preference number: 5 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNCNPLI*CSFLHH
Trigger: GTGATGAAGAAAACTGCACAAAATTAAGGGGTTGCA...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCTAACTTTTCAGTACCAGAATTATGTGTTCCATTTATCTaGGTTCTGAAGTGGTTTGTC +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCIANFSVPELCVPFI*VLKWFV
Trigger: GACAAACCACTTCAGAACCAAGATAAATGGAACACA...TAATTCTGGTACTGAAAAGTTAGCTATACACACACACACACACACACACACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS-3UTR CAA 90 bp AGTGATATAAAGACAATTTCACTGTGTATTTACAAGCACAACACTGAGGCAAGAGTCCTTCCCATTAACTaGTCCAAGAAATCTGAAGGA +
Preference number: 5 (lower is better)
Translates to: SDIKTISLCIYKHNTEARVLPIN*SKKSEG
Trigger: TCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGAC...TCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTTATATCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS-3UTR CAA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATCAAATAATATCCCATTaGGCGTTCCAGATGAAACTT +
Preference number: 5 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNQIISH*AFQMKL
Trigger: AAGTTTCATCTGGAACGCCAAATGGGATATTATTTG...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS-3UTR CAA 90 bp GACAGTAGAAATCATGGGTCAGTTGACATTAGGACTAGTAGTTACACCTACAATTCCACAAACTTCTTCTaGATAGCATCTCCATCTTTT +
Preference number: 5 (lower is better)
Translates to: DSRNHGSVDIRTSSYTYNSTNFF*IASPSF
Trigger: AAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGA...ATTGTAGGTGTAACTACTAGTCCTAATGTCAACTGACCCATGATTTCTACTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000443437.6
CDS TCA 72 bp TGGCCGTTCAGCGAGGGGATACTGAAGGGGGTACGATaGCAGCAAGAGGAGAAGAGAGGTCGGGAGACGGAG +
Preference number: 6 (lower is better)
Translates to: WPFSEGILKGVR*QQEEKRGRETE
Trigger: CTCCGTCTCCCGACCTCTCTTCTCCTCTTGCTGTCATCGTACCCCCTTCAGTATCCCCTCGCTGAACGGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS TCA 72 bp AGGCAAAGAGTGACTGGCCGTTCAGCGAGGGGATACTaGAGGGGGTACGATGACAGCAAGAGGAGAAGAGAG +
Preference number: 6 (lower is better)
Translates to: RQRVTGRSARGY*RGYDDSKRRRE
Trigger: CTCTCTTCTCCTCTTGCTGTCATCGTACCCCCTTCAGTATCCCCTCGCTGAACGGCCAGTCACTCTTTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS CCA 72 bp GTCTTCTTCGGAGGCGCAGGAACTCCTTGTGTTGCCTaGAGACGAAGTTCACCGCTGCGTATTCCAGTAAGG +
Preference number: 6 (lower is better)
Translates to: VFFGGAGTPCVA*RRSSPLRIPVR
Trigger: CCTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp TGCCTCTTCTGTCTTCTTCGGAGGCGCAGGAACTCCTaGTGTTGCCTGGAGACGAAGTTCACCGCTGCGTAT +
Preference number: 6 (lower is better)
Translates to: CLFCLLRRRRNS*CCLETKFTAAY
Trigger: ATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS GCA 72 bp TTCTGTCTTCTTCGGAGGCGCAGGAACTCCTTGTGTTaGCTGGAGACGAAGTTCACCGCTGCGTATTCCAGT +
Preference number: 6 (lower is better)
Translates to: FCLLRRRRNSLC*LETKFTAAYSS
Trigger: ACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp CCAGTCCTGGGCATCATGGTCAGGTCAAACCGAGGCTaGGGACCATCAGTTAACCCAGAAAGACAAAGCCTC +
Preference number: 6 (lower is better)
Translates to: PVLGIMVRSNRG*GPSVNPERQSL
Trigger: GAGGCTTTGTCTTTCTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCTGACCATGATGCCCAGGACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS CAA 90 bp CCGGTCCACAAACTTCTTCTTGATAGCATCTCCATCTTTTGGCGGTaGTGGGAGTGGGTTGGCAGGTGTGGCCTTGACAGCTGTTCCATC +
Preference number: 6 (lower is better)
Translates to: PVHKLLLDSISIFWR*WEWVGRCGLDSCSI
Trigger: GATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 72 bp CAGTCCTGGGCATCATGGTCAGGTCAAACCGAGGCTTaGGACCATCAGTTAACCCAGAAAGACAAAGCCTCA +
Preference number: 6 (lower is better)
Translates to: QSWASWSGQTEA*DHQLTQKDKAS
Trigger: TGAGGCTTTGTCTTTCTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCTGACCATGATGCCCAGGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS CCA 72 bp CTTCTTCTTGATAGCATCTCCATCTTTTGGCGGTTGTaGGAGTGGGTTGGCAGGTGTGGCCTTGACAGCTGT +
Preference number: 6 (lower is better)
Translates to: LLLDSISIFWRL*EWVGRCGLDSC
Trigger: ACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 90 bp TCCTTATTCTGCCTCTTCTGTCTTCTTCGGAGGCGCAGGAACTCCTaGTGTTGCCTGGAGACGAAGTTCACCGCTGCGTATTCCAGTAAG +
Preference number: 6 (lower is better)
Translates to: SLFCLFCLLRRRRNS*CCLETKFTAAYSSK
Trigger: CTTACTGGAATACGCAGCGGTGAACTTCGTCTCCAGGCAACACAAGGAGTTCCTGCGCCTCCGAAGAAGACAGAAGAGGCAGAATAAGGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 90 bp TTCTTCTTGATAGCATCTCCATCTTTTGGCGGTTGTGGGAGTGGGTaGGCAGGTGTGGCCTTGACAGCTGTTCCATCTTTCACTTGGAGG +
Preference number: 6 (lower is better)
Translates to: FFLIASPSFGGCGSG*AGVALTAVPSFTWR
Trigger: CCTCCAAGTGAAAGATGGAACAGCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp AAACTTCTTCTTGATAGCATCTCCATCTTTTGGCGGTaGTGGGAGTGGGTTGGCAGGTGTGGCCTTGACAGC +
Preference number: 6 (lower is better)
Translates to: KLLLDSISIFWR*WEWVGRCGLDS
Trigger: GCTGTCAAGGCCACACCTGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 90 bp GAAAAAGTGCCAGTCCTGGGCATCATGGTCAGGTCAAACCGAGGCTaGGGACCATCAGTTAACCCAGAAAGACAAAGCCTCAGAACTGAT +
Preference number: 6 (lower is better)
Translates to: EKVPVLGIMVRSNRG*GPSVNPERQSLRTD
Trigger: ATCAGTTCTGAGGCTTTGTCTTTCTGGGTTAACTGATGGTCCCAAGCCTCGGTTTGACCTGACCATGATGCCCAGGACTGGCACTTTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8
CDS CAA 90 bp CGAGATATCGTGTCAATCCTTTTTGCCCGGTCCACAAACTTCTTCTaGATAGCATCTCCATCTTTTGGCGGTTGTGGGAGTGGGTTGGCA +
Preference number: 6 (lower is better)
Translates to: RDIVSILFARSTNFF*IASPSFGGCGSGLA
Trigger: TGCCAACCCACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGATATCTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS GCA 72 bp TGGGAAGGCAGCTCGAGATATCGTGTCAATCCTTTTTaGCCGGTCCACAAACTTCTTCTTGATAGCATCTCC +
Preference number: 6 (lower is better)
Translates to: WEGSSRYRVNPF*PVHKLLLDSIS
Trigger: GGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACACGATATCTCGAGCTGCCTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp GTGTCAATCCTTTTTGCCCGGTCCACAAACTTCTTCTaGATAGCATCTCCATCTTTTGGCGGTTGTGGGAGT +
Preference number: 6 (lower is better)
Translates to: VSILFARSTNFF*IASPSFGGCGS
Trigger: ACTCCCACAACCGCCAAAAGATGGAGATGCTATCAAGAAGAAGTTTGTGGACCGGGCAAAAAGGATTGACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS TCA 72 bp AAAGACAATTTCACTGTGTATTTACAAGCACAACACTaGGGCAAGAAGGTCCCAGGGTCTGTAGGGCACATC +
Preference number: 6 (lower is better)
Translates to: KDNFTVYLQAQH*GKKVPGSVGHI
Trigger: GATGTGCCCTACAGACCCTGGGACCTTCTTGCCTCAGTGTTGTGCTTGTAAATACACAGTGAAATTGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 72 bp AAGGTCCCAGGGTCTGTAGGGCACATCTATTTCTTGTaGACATCTTCATGCCGAATGATCTTGTATGTGATC +
Preference number: 6 (lower is better)
Translates to: KVPGSVGHIYFL*TSSCRMILYVI
Trigger: GATCACATACAAGATCATTCGGCATGAAGATGTCCACAAGAAATAGATGTGCCCTACAGACCCTGGGACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp AAGAAGGTCCCAGGGTCTGTAGGGCACATCTATTTCTaGTGGACATCTTCATGCCGAATGATCTTGTATGTG +
Preference number: 6 (lower is better)
Translates to: KKVPGSVGHIYF*WTSSCRMILYV
Trigger: CACATACAAGATCATTCGGCATGAAGATGTCCACAAGAAATAGATGTGCCCTACAGACCCTGGGACCTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS GCA 72 bp TGTTCACTAGCTGCCGGTTCATTCCTGTTTCTGTGTTaGTTGTGGAAAATATCCCGAAATGATTCCAGAAAG +
Preference number: 6 (lower is better)
Translates to: CSLAAGSFLFLC*LWKISRNDSRK
Trigger: CTTTCTGGAATCATTTCGGGATATTTTCCACAAGCAACACAGAAACAGGAATGAACCGGCAGCTAGTGAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 72 bp TCACTAGCTGCCGGTTCATTCCTGTTTCTGTGTTGCTaGTGGAAAATATCCCGAAATGATTCCAGAAAGATG +
Preference number: 6 (lower is better)
Translates to: SLAAGSFLFLCC*WKISRNDSRKM
Trigger: CATCTTTCTGGAATCATTTCGGGATATTTTCCACAAGCAACACAGAAACAGGAATGAACCGGCAGCTAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 90 bp TCCCGAAATGATTCCAGAAAGATGCTAGGACAAAGTGTCTGTTTATaGTCCAGATTCAAAATTTGGCAGGAACCTAGTTTCCCAGCCTAT +
Preference number: 6 (lower is better)
Translates to: SRNDSRKMLGQSVCL*SRFKIWQEPSFPAY
Trigger: ATAGGCTGGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGACAATAAACAGACACTTTGTCCTAGCATCTTTCTGGAATCATTTCGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS TCA 72 bp CCTGTTTCTGTGTTGCTTGTGGAAAATATCCCGAAATaGTTCCAGAAAGATGCTAGGACAAAGTGTCTGTTT +
Preference number: 6 (lower is better)
Translates to: PVSVLLVENIPK*FQKDARTKCLF
Trigger: AAACAGACACTTTGTCCTAGCATCTTTCTGGAATCATTTCGGGATATTTTCCACAAGCAACACAGAAACAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CCA 72 bp GGACAAAGTGTCTGTTTATTGTCCAGATTCAAAATTTaGCAGGAACCTAGTTTCCCAGCCTATAAATTTCAG +
Preference number: 6 (lower is better)
Translates to: GQSVCLLSRFKI*QEPSFPAYKFQ
Trigger: CTGAAATTTATAGGCTGGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGACAATAAACAGACACTTTGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000443437.6
CDS CAA 72 bp GATTCCAGAAAGATGCTAGGACAAAGTGTCTGTTTATaGTCCAGATTCAAAATTTGGCAGGAACCTAGTTTC +
Preference number: 6 (lower is better)
Translates to: DSRKMLGQSVCL*SRFKIWQEPSF
Trigger: GAAACTAGGTTCCTGCCAAATTTTGAATCTGGACAATAAACAGACACTTTGTCCTAGCATCTTTCTGGAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000218075.9
ENST00000355020.8
ENST00000443437.6
CDS CAA 90 bp TCCCGAAATGATTCCAGAAAGATGCTAGGACAAAGTGTCTGTTTATaGTCCAGATTCAAAATTTGGCAGGAACCTAGTTTCCTTGAAAAT +
Preference number: 6 (lower is better)
Translates to: SRNDSRKMLGQSVCL*SRFKIWQEPSFLEN
Trigger: ATTTTCAAGGAAACTAGGTTCCTGCCAAATTTTGAATCTGGACAATAAACAGACACTTTGTCCTAGCATCTTTCTGGAATCATTTCGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000218075.9
ENST00000355020.8