Pregenerated sensors for GKN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000169605Ensembl transcript IDs: ENST00000377938.4, ENST00000478888.1, ENST00000673932.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTCTTCACGAAAGCAGTGGACAGAGGAGTAGGCAAGCATGGACCTaGATGAGAAGCCTTCTCATATTTGTACTTAACCAGGTTGACTCA | + |
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Preference number: 5 (lower is better) Translates to: CLHESSGQRSRQAWT*MRSLLIFVLNQVDS Trigger: TGAGTCAACCTGGTTAAGTACAAATATGAGAAGGCTTCTCATTCAGGTCCATGCTTGCCTACTCCTCTGTCCACTGCTTTCGTGAAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000673932.3 |
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| CDS GCA 90 bp | GAAGCAGTAATGTTGTATAAGTCTTTCAGCATTATTGAGGGTATCTaGAGGCAAGGCAAAAGGATGTTCATATTTGTTGTATATACCCAC | + |
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Preference number: 5 (lower is better) Translates to: EAVMLYKSFSIIEGI*RQGKRMFIFVVYTH Trigger: GTGGGTATATACAACAAATATGAACATCCTTTTGCCTTGCCTGCAGATACCCTCAATAATGCTGAAAGACTTATACAACATTACTGCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000478888.1 |
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| CDS TCA 72 bp | GAACTTGCTCAGGTCATCGACTTTGTTTGGGTTGACTaGGTACATCAGGCCCTTGGGAGGTGGTCCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ELAQVIDFVWVD*VHQALGRWSSW Trigger: CCAGGAGGACCACCTCCCAAGGGCCTGATGTACTCAGTCAACCCAAACAAAGTCGATGACCTGAGCAAGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS TCA 72 bp | TTCCGAACTTGCTCAGGTCATCGACTTTGTTTGGGTTaGCTGAGTACATCAGGCCCTTGGGAGGTGGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FRTCSGHRLCLG*LSTSGPWEVVL Trigger: GAGGACCACCTCCCAAGGGCCTGATGTACTCAGTCAACCCAAACAAAGTCGATGACCTGAGCAAGTTCGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS CAA 72 bp | TTTCCGAACTTGCTCAGGTCATCGACTTTGTTTGGGTaGACTGAGTACATCAGGCCCTTGGGAGGTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: FPNLLRSSTLFG*TEYIRPLGGGP Trigger: AGGACCACCTCCCAAGGGCCTGATGTACTCAGTCAACCCAAACAAAGTCGATGACCTGAGCAAGTTCGGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS GCA 72 bp | TGGTCCCTTACCCTGAAGCTTCTTTTCCTTGACCAGTaGATCAAGGGATTGAATGGAGGGCATGACTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: WSLTLKLLFLDQ*IKGLNGGHDFL Trigger: AAGGAAGTCATGCCCTCCATTCAATCCCTTGATGCACTGGTCAAGGAAAAGAAGCTTCAGGGTAAGGGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS CAA 90 bp | GAGTCCCATCCGTTGTTATTGTCAACATTGGCCACATTGTGTTCATaGTTGACACTCACTGACTGCTGCCCACTTCCAGCATTGTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: ESHPLLLSTLATLCS*LTLTDCCPLPALLL Trigger: CAACAACAATGCTGGAAGTGGGCAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGACAATAACAACGGATGGGACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000377938.4 ENST00000478888.1 ENST00000673932.3 |
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| CDS CAA 72 bp | CCGTTGTTATTGTCAACATTGGCCACATTGTGTTCATaGTTGACACTCACTGACTGCTGCCCACTTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PLLLSTLATLCS*LTLTDCCPLPA Trigger: TGCTGGAAGTGGGCAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGACAATAACAACGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000377938.4 ENST00000478888.1 ENST00000673932.3 |
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| CDS CAA 90 bp | TCCCATCCGTTGTTATTGTCAACATTGGCCACATTGTGTTCATTGTaGACACTCACTGACTGCTGCCCACTTCCAGCATTGTTGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SHPLLLSTLATLCSL*TLTDCCPLPALLLS Trigger: TGACAACAACAATGCTGGAAGTGGGCAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGACAATAACAACGGATGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000377938.4 ENST00000478888.1 ENST00000673932.3 |
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| CDS CAA 90 bp | TCCCTTACCCTGAAGCTTCTTTTCCTTGACCAGTGCATCAAGGGATaGAATGGAGGGCATGACTTCCTTGTTCATTTTGTGCACAATGCA | + |
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Preference number: 6 (lower is better) Translates to: SLTLKLLFLDQCIKG*NGGHDFLVHFVHNA Trigger: TGCATTGTGCACAAAATGAACAAGGAAGTCATGCCCTCCATTCAATCCCTTGATGCACTGGTCAAGGAAAAGAAGCTTCAGGGTAAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS TCA 72 bp | GAAAGCAGTGGACAGAGGAGTAGGCAAGCATGGACCTaGATGAGAAGCCTTCTCATATTTGTACTTAACCAG | + |
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Preference number: 6 (lower is better) Translates to: ESSGQRSRQAWT*MRSLLIFVLNQ Trigger: CTGGTTAAGTACAAATATGAGAAGGCTTCTCATTCAGGTCCATGCTTGCCTACTCCTCTGTCCACTGCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000673932.3 |
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| CDS CCA 72 bp | GTCTGGTTGCAGCAAAGCCATTTCCATAATCCCAGATaGAATTCCAGGAGTCCCATCCGTTGTTATTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: VWLQQSHFHNPR*NSRSPIRCYCQ Trigger: TTGACAATAACAACGGATGGGACTCCTGGAATTCCATCTGGGATTATGGAAATGGCTTTGCTGCAACCAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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| CDS CAA 72 bp | GAATTCCAGGAGTCCCATCCGTTGTTATTGTCAACATaGGCCACATTGTGTTCATTGTTGACACTCACTGAC | + |
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Preference number: 6 (lower is better) Translates to: EFQESHPLLLST*ATLCSLLTLTD Trigger: GTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTTGACAATAACAACGGATGGGACTCCTGGAATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000377938.4 ENST00000478888.1 ENST00000673932.3 |
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| CDS CAA 72 bp | TCCCAGATGGAATTCCAGGAGTCCCATCCGTTGTTATaGTCAACATTGGCCACATTGTGTTCATTGTTGACA | + |
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Preference number: 6 (lower is better) Translates to: SQMEFQESHPLL*STLATLCSLLT Trigger: TGTCAACAATGAACACAATGTGGCCAATGTTGACAATAACAACGGATGGGACTCCTGGAATTCCATCTGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000377938.4 ENST00000478888.1 ENST00000673932.3 |
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| CDS CCA 72 bp | TTGCACGTTGACTACCTACATTTCCATAATCCCAGATaGAATTCCAGGAGTCCCATCCGTTGTTATTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: LHVDYLHFHNPR*NSRSPIRCYCQ Trigger: TTGACAATAACAACGGATGGGACTCCTGGAATTCCATCTGGGATTATGGAAATGTAGGTAGTCAACGTGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000478888.1 |
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| CDS CAA 90 bp | GGGCATGACTTCCTTGTTCATTTTGTGCACAATGCATGTCTTCTTTaGAAAGAGTCTGGTTGCAGCAAAGCCATTTCCATAATCCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: GHDFLVHFVHNACLL*KESGCSKAISIIPD Trigger: ATCTGGGATTATGGAAATGGCTTTGCTGCAACCAGACTCTTTCAAAAGAAGACATGCATTGTGCACAAAATGAACAAGGAAGTCATGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000377938.4 ENST00000673932.3 |
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